Wall clock time and date at job start Mon Mar 30 2020 02:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.46952 * 111.00037 * 46.20094 * 11 10 9 13 13 C 1.53055 * 109.36328 * 183.18414 * 12 11 10 14 14 N 1.46951 * 109.36619 * 301.60477 * 13 12 11 15 15 C 1.46952 * 110.88500 * 59.31802 * 14 13 12 16 16 H 1.09002 * 109.50514 * 60.65697 * 15 14 13 17 17 C 1.50699 * 109.49307 * 180.71326 * 15 14 13 18 18 N 1.34776 * 120.00091 * 199.89158 * 17 15 14 19 19 O 1.21284 * 119.99607 * 19.88848 * 17 15 14 20 20 C 1.46961 * 110.99713 * 170.00543 * 11 10 9 21 21 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 23 23 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 24 24 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 25 25 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 26 26 H 1.08995 * 109.48975 * 303.15425 * 12 11 10 27 27 H 1.09003 * 109.48907 * 63.22628 * 12 11 10 28 28 H 1.08995 * 109.49078 * 181.62802 * 13 12 11 29 29 H 1.09003 * 109.50141 * 61.57900 * 13 12 11 30 30 H 1.00904 * 110.99811 * 295.44891 * 14 13 12 31 31 H 0.96999 * 120.00120 * 359.97438 * 18 17 15 32 32 H 0.96995 * 119.99779 * 179.97438 * 18 17 15 33 33 H 1.09004 * 109.48365 * 296.77411 * 20 11 10 34 34 H 1.08994 * 109.49103 * 56.82086 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 0.4256 -4.9153 -0.9917 13 6 -0.3627 -6.2244 -0.9059 14 7 0.5442 -7.3559 -1.1440 15 6 1.6295 -7.3748 -0.1534 16 1 1.2080 -7.4806 0.8462 17 6 2.5488 -8.5349 -0.4368 18 7 3.3631 -9.0013 0.5305 19 8 2.5557 -9.0487 -1.5354 20 6 2.4179 -6.0658 -0.2393 21 1 -0.4851 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8904 23 1 0.6248 -2.5571 0.8896 24 1 2.8721 -3.6042 -0.8905 25 1 2.8721 -3.6043 0.8895 26 1 -0.2392 -4.0763 -0.7867 27 1 0.8474 -4.8098 -1.9913 28 1 -1.1503 -6.2247 -1.6593 29 1 -0.8074 -6.3171 0.0850 30 1 0.9122 -7.3328 -2.0833 31 1 3.3578 -8.5901 1.4090 32 1 3.9545 -9.7482 0.3482 33 1 2.8623 -5.9733 -1.2303 34 1 3.2056 -6.0653 0.5140 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238562890.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:17 Heat of formation + Delta-G solvation = -37.233816 kcal Electronic energy + Delta-G solvation = -15957.371654 eV Core-core repulsion = 13310.647525 eV Total energy + Delta-G solvation = -2646.724130 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.12570 -38.21100 -34.70382 -33.83274 -32.74780 -30.98969 -29.42338 -25.91765 -24.52556 -23.19613 -21.67408 -20.21938 -19.73990 -17.69247 -16.87394 -16.54272 -15.31893 -15.20000 -14.70985 -14.52180 -14.40845 -14.23807 -13.72424 -13.16691 -12.93445 -12.19264 -12.05702 -11.59583 -11.45069 -11.09540 -10.98259 -10.78365 -10.59038 -10.07582 -9.98157 -9.82785 -9.46548 -9.16483 -8.42809 -8.35897 -7.86778 -6.06557 -4.09227 2.51881 3.27194 3.29438 3.34959 3.38641 4.16894 4.40558 4.47049 4.88571 4.98820 5.11304 5.29739 5.40244 5.46864 5.52135 5.74431 5.78927 6.15949 6.20263 6.34393 6.36383 6.60998 6.80680 6.89281 7.19349 7.29366 7.40004 7.45830 7.65003 7.75982 7.95793 8.14571 8.34944 8.97224 9.55109 11.04846 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.051969 B = 0.005328 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.649895 B = 5254.186330 C = 5609.299788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.022 3.978 10 C 0.062 3.938 11 N -0.532 5.532 12 C 0.010 3.990 13 C 0.060 3.940 14 N -0.671 5.671 15 C 0.073 3.927 16 H 0.111 0.889 17 C 0.528 3.472 18 N -0.855 5.855 19 O -0.538 6.538 20 C 0.029 3.971 21 H 0.261 0.739 22 H 0.020 0.980 23 H 0.026 0.974 24 H 0.020 0.980 25 H 0.064 0.936 26 H 0.102 0.898 27 H 0.029 0.971 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.348 0.652 31 H 0.403 0.597 32 H 0.400 0.600 33 H 0.034 0.966 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.584 -14.183 1.779 14.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.065 4.065 11 N -0.257 5.257 12 C -0.119 4.119 13 C -0.069 4.069 14 N -0.302 5.302 15 C -0.041 4.041 16 H 0.129 0.871 17 C 0.312 3.688 18 N -0.419 5.419 19 O -0.413 6.413 20 C -0.102 4.102 21 H 0.070 0.930 22 H 0.039 0.961 23 H 0.044 0.956 24 H 0.038 0.962 25 H 0.083 0.917 26 H 0.120 0.880 27 H 0.047 0.953 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.167 0.833 31 H 0.232 0.768 32 H 0.231 0.769 33 H 0.052 0.948 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.683 -14.788 1.805 15.137 hybrid contribution 1.713 1.785 -0.670 2.563 sum 4.396 -13.003 1.135 13.772 Atomic orbital electron populations 1.69963 1.06033 1.26619 1.50582 1.24984 0.94844 0.99242 0.95162 0.86528 0.80074 0.83707 0.77642 1.19771 1.20994 1.20907 1.21196 0.93036 0.90940 1.51011 0.92714 1.19237 0.94057 0.90420 0.97847 1.22371 0.97113 0.87849 0.99121 1.62269 1.11451 1.03378 1.48611 1.22971 0.95309 1.00267 0.93392 1.22189 0.94734 0.86898 1.03103 1.60622 1.18160 1.44747 1.06632 1.21556 0.91661 0.91545 0.99376 0.87134 1.20533 0.79972 0.84077 0.84206 1.43841 1.43958 1.38390 1.15719 1.90720 1.67669 1.59590 1.23356 1.22644 0.95640 0.91455 1.00473 0.92957 0.96146 0.95588 0.96169 0.91718 0.87966 0.95263 0.89915 0.89908 0.83328 0.76834 0.76907 0.94829 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.54 4.24 -27.88 -0.12 0.42 16 10 C 0.06 1.27 5.22 -3.82 -0.02 1.25 16 11 N -0.53 -9.22 4.86 -234.46 -1.14 -10.36 16 12 C 0.01 0.17 4.92 -3.77 -0.02 0.15 16 13 C 0.06 0.83 6.72 -3.77 -0.03 0.81 16 14 N -0.67 -9.33 6.36 -107.82 -0.69 -10.02 16 15 C 0.07 0.93 2.99 -68.81 -0.21 0.72 16 16 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 17 C 0.53 6.62 7.35 -10.99 -0.08 6.54 16 18 N -0.86 -6.89 8.87 31.22 0.28 -6.62 16 19 O -0.54 -8.83 16.98 5.55 0.09 -8.74 16 20 C 0.03 0.41 4.84 -3.76 -0.02 0.39 16 21 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 22 H 0.02 0.54 6.26 -51.93 -0.33 0.21 16 23 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.02 0.42 8.08 -51.93 -0.42 0.00 16 25 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 26 H 0.10 1.94 5.99 -51.93 -0.31 1.63 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.35 5.07 8.26 -39.29 -0.32 4.74 16 31 H 0.40 2.21 8.83 -40.82 -0.36 1.84 16 32 H 0.40 2.71 8.93 -40.82 -0.36 2.35 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 279.60 15.07 4.21 4.21 Total: -1.00 -32.07 279.60 -7.45 -39.52 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.03 Total: 4.26 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -0.90 Total: -3.00 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.81 Total: -52.59 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.07 -7.45 -39.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238562890.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.289 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds