Wall clock time and date at job start Mon Mar 30 2020 02:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.46952 * 111.00037 * 46.20094 * 11 10 9 13 13 C 1.53055 * 109.36328 * 183.18414 * 12 11 10 14 14 N 1.46951 * 109.36619 * 301.60477 * 13 12 11 15 15 C 1.46952 * 110.88500 * 59.31802 * 14 13 12 16 16 H 1.09002 * 109.50514 * 60.65697 * 15 14 13 17 17 C 1.50699 * 109.49307 * 180.71326 * 15 14 13 18 18 N 1.34776 * 120.00091 * 199.89158 * 17 15 14 19 19 O 1.21284 * 119.99607 * 19.88848 * 17 15 14 20 20 C 1.46961 * 110.99713 * 170.00543 * 11 10 9 21 21 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 23 23 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 24 24 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 25 25 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 26 26 H 1.08995 * 109.48975 * 303.15425 * 12 11 10 27 27 H 1.09003 * 109.48907 * 63.22628 * 12 11 10 28 28 H 1.08995 * 109.49078 * 181.62802 * 13 12 11 29 29 H 1.09003 * 109.50141 * 61.57900 * 13 12 11 30 30 H 1.00904 * 110.99811 * 295.44891 * 14 13 12 31 31 H 0.96999 * 120.00120 * 359.97438 * 18 17 15 32 32 H 0.96995 * 119.99779 * 179.97438 * 18 17 15 33 33 H 1.09004 * 109.48365 * 296.77411 * 20 11 10 34 34 H 1.08994 * 109.49103 * 56.82086 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 0.4256 -4.9153 -0.9917 13 6 -0.3627 -6.2244 -0.9059 14 7 0.5442 -7.3559 -1.1440 15 6 1.6295 -7.3748 -0.1534 16 1 1.2080 -7.4806 0.8462 17 6 2.5488 -8.5349 -0.4368 18 7 3.3631 -9.0013 0.5305 19 8 2.5557 -9.0487 -1.5354 20 6 2.4179 -6.0658 -0.2393 21 1 -0.4851 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8904 23 1 0.6248 -2.5571 0.8896 24 1 2.8721 -3.6042 -0.8905 25 1 2.8721 -3.6043 0.8895 26 1 -0.2392 -4.0763 -0.7867 27 1 0.8474 -4.8098 -1.9913 28 1 -1.1503 -6.2247 -1.6593 29 1 -0.8074 -6.3171 0.0850 30 1 0.9122 -7.3328 -2.0833 31 1 3.3578 -8.5901 1.4090 32 1 3.9545 -9.7482 0.3482 33 1 2.8623 -5.9733 -1.2303 34 1 3.2056 -6.0653 0.5140 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238562890.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:16 Heat of formation + Delta-G solvation = -65.492781 kcal Electronic energy + Delta-G solvation = -15958.597055 eV Core-core repulsion = 13310.647525 eV Total energy + Delta-G solvation = -2647.949530 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.22822 -39.43994 -36.25193 -34.74087 -34.65663 -32.18183 -31.22729 -27.46829 -26.03986 -24.59398 -23.13692 -21.28466 -21.23613 -18.76633 -18.47822 -17.81683 -16.66115 -16.56943 -16.25900 -16.12346 -15.68361 -15.34246 -14.98719 -14.72313 -14.34673 -13.88196 -13.54803 -13.22500 -12.88038 -12.81963 -12.46092 -12.36347 -12.11765 -11.91802 -11.47978 -11.22019 -10.98230 -10.66269 -10.57063 -9.60268 -9.27411 -8.22248 -6.33250 1.39536 1.40080 1.52054 1.53218 2.36272 2.41507 2.90443 3.11754 3.35154 3.85855 3.94531 4.02984 4.14156 4.16786 4.33839 4.46994 4.57289 4.66506 4.69558 4.87772 4.99111 5.09612 5.41448 5.60115 5.73398 5.75459 5.91518 5.97056 6.11765 6.23303 6.26318 6.44404 6.83033 7.31800 7.36101 8.89789 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.051969 B = 0.005328 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.649895 B = 5254.186330 C = 5609.299788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.031 3.969 10 C 0.077 3.923 11 N -0.533 5.533 12 C 0.013 3.987 13 C 0.072 3.928 14 N -0.672 5.672 15 C 0.077 3.923 16 H 0.128 0.872 17 C 0.530 3.470 18 N -0.830 5.830 19 O -0.581 6.581 20 C 0.032 3.968 21 H 0.264 0.736 22 H 0.000 1.000 23 H -0.002 1.002 24 H 0.015 0.985 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.019 0.981 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.344 0.656 31 H 0.419 0.581 32 H 0.411 0.589 33 H 0.021 0.979 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.768 -14.794 2.572 15.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.007 4.007 10 C -0.050 4.050 11 N -0.258 5.258 12 C -0.117 4.117 13 C -0.057 4.057 14 N -0.302 5.302 15 C -0.037 4.037 16 H 0.146 0.854 17 C 0.314 3.686 18 N -0.395 5.395 19 O -0.460 6.460 20 C -0.098 4.098 21 H 0.073 0.927 22 H 0.018 0.982 23 H 0.017 0.983 24 H 0.033 0.967 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.037 0.963 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.162 0.838 31 H 0.251 0.749 32 H 0.243 0.757 33 H 0.040 0.960 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.895 -15.425 2.648 16.128 hybrid contribution 1.339 1.934 -0.883 2.513 sum 5.235 -13.491 1.765 14.578 Atomic orbital electron populations 1.70088 1.07712 1.27771 1.51363 1.25906 0.95728 1.03174 0.94579 0.85413 0.79046 0.78853 0.77808 1.18691 1.20510 1.20214 1.21631 0.93489 0.92302 1.50985 0.92336 1.19048 0.94259 0.91892 0.95465 1.22041 0.95857 0.87978 0.99162 1.62222 1.11781 1.02899 1.48899 1.22933 0.95031 1.01123 0.92631 1.22129 0.94578 0.85040 1.03984 1.60651 1.18644 1.44135 1.06753 1.21588 0.91354 0.90847 0.99862 0.85430 1.20421 0.80223 0.83821 0.84178 1.43629 1.42358 1.37933 1.15535 1.90713 1.69112 1.60975 1.25197 1.22708 0.95753 0.90841 1.00530 0.92701 0.98196 0.98333 0.96688 0.90986 0.90828 0.96301 0.88355 0.89378 0.83766 0.74943 0.75706 0.96041 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.55 -30.66 9.11 25.60 0.23 -30.43 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 9 C 0.03 1.59 4.24 29.85 0.13 1.71 16 10 C 0.08 3.16 5.22 86.31 0.45 3.61 16 11 N -0.53 -18.21 4.86 -895.70 -4.35 -22.56 16 12 C 0.01 0.43 4.92 86.31 0.42 0.85 16 13 C 0.07 1.93 6.72 86.31 0.58 2.51 16 14 N -0.67 -17.78 6.36 -495.02 -3.15 -20.93 16 15 C 0.08 1.82 2.99 44.18 0.13 1.95 16 16 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 17 C 0.53 12.15 7.35 87.66 0.64 12.80 16 18 N -0.83 -10.90 8.87 -173.53 -1.54 -12.44 16 19 O -0.58 -18.36 16.98 -3.04 -0.05 -18.41 16 20 C 0.03 0.86 4.84 86.31 0.42 1.28 16 21 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 22 H 0.00 -0.01 6.26 -2.39 -0.01 -0.03 16 23 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 24 H 0.01 0.62 8.08 -2.39 -0.02 0.61 16 25 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 26 H 0.07 2.92 5.99 -2.39 -0.01 2.91 16 27 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.34 9.75 8.26 -89.69 -0.74 9.01 16 31 H 0.42 3.06 8.83 -92.71 -0.82 2.24 16 32 H 0.41 4.37 8.93 -92.71 -0.83 3.54 16 33 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -69.42 279.60 -4.57 -74.00 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -1.26 Total: 15.05 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 3.47 Total: -5.00 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -8.76 Total: -111.36 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.05 Total: -18.41 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -69.42 -4.57 -74.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238562890.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.504 kcal (2) G-P(sol) polarization free energy of solvation -69.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds