Wall clock time and date at job start Mon Mar 30 2020 02:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99665 * 2 1 4 4 H 1.48504 * 109.47045 * 239.99817 * 3 2 1 5 5 H 1.48499 * 109.47294 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47623 * 120.00009 * 3 2 1 7 7 C 1.37869 * 120.00478 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00432 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99638 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46777 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.47063 * 180.02562 * 10 9 7 12 12 C 1.46961 * 110.99354 * 313.79542 * 11 10 9 13 13 C 1.53059 * 109.35852 * 176.81332 * 12 11 10 14 14 N 1.46955 * 109.36563 * 58.40245 * 13 12 11 15 15 C 1.46955 * 110.87898 * 300.67816 * 14 13 12 16 16 H 1.09003 * 109.48683 * 299.33164 * 15 14 13 17 17 C 1.50703 * 109.48792 * 179.29135 * 15 14 13 18 18 N 1.34776 * 119.99999 * 159.99975 * 17 15 14 19 19 O 1.21275 * 119.99913 * 339.99488 * 17 15 14 20 20 C 1.46955 * 111.00028 * 189.99846 * 11 10 9 21 21 H 0.97000 * 120.00162 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47178 * 60.00349 * 9 7 2 23 23 H 1.09001 * 109.47241 * 299.99979 * 9 7 2 24 24 H 1.08997 * 109.47771 * 59.99696 * 10 9 7 25 25 H 1.09001 * 109.46846 * 299.99766 * 10 9 7 26 26 H 1.08992 * 109.48914 * 296.77581 * 12 11 10 27 27 H 1.08994 * 109.48893 * 56.84943 * 12 11 10 28 28 H 1.09003 * 109.48841 * 298.43162 * 13 12 11 29 29 H 1.08998 * 109.48261 * 178.36981 * 13 12 11 30 30 H 1.00901 * 110.99738 * 176.81237 * 14 13 12 31 31 H 0.97005 * 119.99634 * 359.97438 * 18 17 15 32 32 H 0.96995 * 119.99779 * 179.97438 * 18 17 15 33 33 H 1.08994 * 109.48889 * 63.21824 * 20 11 10 34 34 H 1.09002 * 109.48895 * 303.15318 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2455 -3.6619 0.0027 11 7 1.5111 -4.9342 0.0033 12 6 0.4251 -4.9149 0.9933 13 6 -0.3632 -6.2241 0.9073 14 7 0.5436 -7.3555 1.1465 15 6 1.6295 -7.3747 0.1565 16 1 1.2084 -7.4810 -0.8432 17 6 2.5486 -8.5347 0.4409 18 7 3.3619 -9.0029 -0.5264 19 8 2.5563 -9.0469 1.5402 20 6 2.4178 -6.0657 0.2425 21 1 -0.4850 0.8400 -0.0004 22 1 0.6242 -2.5575 -0.8880 23 1 0.6248 -2.5563 0.8920 24 1 2.8722 -3.6034 0.8926 25 1 2.8721 -3.6049 -0.8873 26 1 0.8462 -4.8090 1.9929 27 1 -0.2396 -4.0760 0.7875 28 1 -0.8070 -6.3169 -0.0840 29 1 -1.1512 -6.2240 1.6603 30 1 0.0391 -8.2293 1.1468 31 1 3.3555 -8.5934 -1.4057 32 1 3.9537 -9.7493 -0.3432 33 1 2.8616 -5.9728 1.2336 34 1 3.2059 -6.0656 -0.5106 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238621154.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:18 Heat of formation + Delta-G solvation = -33.578593 kcal Electronic energy + Delta-G solvation = -15935.883666 eV Core-core repulsion = 13289.318038 eV Total energy + Delta-G solvation = -2646.565627 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.00206 -38.08558 -34.74304 -33.79835 -32.76405 -30.91839 -29.48791 -26.08856 -24.48378 -23.19492 -21.56819 -19.94223 -19.36107 -17.70983 -16.84082 -16.53044 -16.00144 -15.01554 -14.52370 -14.42385 -14.35298 -14.01805 -13.77586 -13.56938 -12.64357 -12.43026 -12.09350 -11.49720 -11.22327 -10.97046 -10.89380 -10.59506 -10.49265 -9.99445 -9.93812 -9.81713 -9.33156 -9.13638 -8.44827 -8.36375 -7.80157 -6.02615 -4.05118 2.52737 3.28384 3.32380 3.36872 3.39220 4.22290 4.36244 4.50268 4.85787 4.99557 5.13627 5.33189 5.38187 5.60853 5.65899 5.74083 5.96120 6.16602 6.33252 6.40216 6.45509 6.61890 6.86501 6.90269 7.18518 7.30101 7.45837 7.52297 7.70868 7.81035 8.00477 8.17420 8.39375 9.00953 9.58834 11.08730 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.051917 B = 0.005321 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.197336 B = 5261.163009 C = 5621.948745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.022 3.978 10 C 0.062 3.938 11 N -0.539 5.539 12 C 0.049 3.951 13 C 0.062 3.938 14 N -0.670 5.670 15 C 0.075 3.925 16 H 0.067 0.933 17 C 0.521 3.479 18 N -0.857 5.857 19 O -0.526 6.526 20 C 0.067 3.933 21 H 0.261 0.739 22 H 0.025 0.975 23 H 0.021 0.979 24 H 0.022 0.978 25 H 0.063 0.937 26 H 0.039 0.961 27 H 0.100 0.900 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.343 0.657 31 H 0.402 0.598 32 H 0.400 0.600 33 H 0.043 0.957 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.659 -15.140 -2.698 15.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.064 4.064 11 N -0.263 5.263 12 C -0.079 4.079 13 C -0.068 4.068 14 N -0.303 5.303 15 C -0.039 4.039 16 H 0.085 0.915 17 C 0.304 3.696 18 N -0.422 5.422 19 O -0.401 6.401 20 C -0.062 4.062 21 H 0.071 0.929 22 H 0.043 0.957 23 H 0.039 0.961 24 H 0.041 0.959 25 H 0.082 0.918 26 H 0.057 0.943 27 H 0.118 0.882 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.161 0.839 31 H 0.231 0.769 32 H 0.231 0.769 33 H 0.061 0.939 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.518 -14.934 -1.902 15.264 hybrid contribution 0.656 0.620 -0.429 0.999 sum 3.174 -14.315 -2.332 14.847 Atomic orbital electron populations 1.69949 1.06027 1.26782 1.50528 1.24979 0.94839 0.99193 0.95195 0.86643 0.79576 0.83071 0.78615 1.20225 1.21254 1.20269 1.21132 0.92984 0.90972 1.51102 0.92788 1.19234 0.94081 0.90418 0.97822 1.22346 0.97120 0.87775 0.99186 1.62316 1.11696 1.03516 1.48817 1.22312 0.94458 0.97061 0.94047 1.22110 0.94254 0.90330 1.00058 1.60220 1.13237 1.06803 1.50024 1.21458 0.93178 0.93769 0.95488 0.91529 1.20603 0.80730 0.83993 0.84263 1.43899 1.44213 1.38483 1.15620 1.90741 1.67412 1.59079 1.22828 1.21975 0.94507 0.89089 1.00633 0.92892 0.95677 0.96069 0.95937 0.91813 0.94261 0.88221 0.94205 0.89989 0.83868 0.76931 0.76932 0.93862 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.55 4.24 -27.88 -0.12 0.43 16 10 C 0.06 1.30 5.22 -3.82 -0.02 1.28 16 11 N -0.54 -9.64 4.86 -234.46 -1.14 -10.78 16 12 C 0.05 0.87 4.93 -3.76 -0.02 0.85 16 13 C 0.06 0.87 6.72 -3.76 -0.03 0.85 16 14 N -0.67 -9.42 6.12 -107.81 -0.66 -10.08 16 15 C 0.07 0.98 2.98 -68.81 -0.21 0.78 16 16 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 17 C 0.52 6.61 7.29 -10.98 -0.08 6.53 16 18 N -0.86 -6.94 8.87 31.22 0.28 -6.67 16 19 O -0.53 -8.87 17.39 5.56 0.10 -8.77 16 20 C 0.07 1.02 4.85 -3.77 -0.02 1.00 16 21 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 22 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.02 0.56 6.26 -51.93 -0.33 0.24 16 24 H 0.02 0.48 8.08 -51.93 -0.42 0.06 16 25 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.10 1.93 5.99 -51.93 -0.31 1.62 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.34 4.25 8.82 -39.29 -0.35 3.91 16 31 H 0.40 2.24 8.83 -40.82 -0.36 1.88 16 32 H 0.40 2.71 8.93 -40.82 -0.36 2.35 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 280.27 15.07 4.22 4.22 Total: -1.00 -32.74 280.27 -7.43 -40.18 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.05 Total: 2.83 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -0.90 Total: -1.64 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -0.79 Total: -53.26 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.10 Total: -8.77 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.74 -7.43 -40.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238621154.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.597 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds