Wall clock time and date at job start Mon Mar 30 2020 02:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34644 * 116.99604 * 2 1 4 4 O 1.21503 * 120.00319 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99676 * 180.02562 * 3 2 1 6 6 C 1.46494 * 119.99862 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47111 * 205.00214 * 6 5 3 8 8 C 1.53005 * 109.46947 * 299.99470 * 7 6 5 9 9 C 1.52992 * 109.47274 * 300.00064 * 8 7 6 10 10 C 1.50700 * 109.47257 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99988 * 359.97438 * 10 9 8 12 12 C 1.37885 * 120.00047 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99792 * 359.72305 * 12 10 9 14 14 Si 1.86795 * 120.00009 * 180.02562 * 12 10 9 15 15 H 1.48508 * 109.47021 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47081 * 119.99727 * 14 12 10 17 17 H 1.48501 * 109.47213 * 240.00099 * 14 12 10 18 18 C 1.53003 * 109.47195 * 59.99743 * 9 8 7 19 19 C 1.52994 * 109.47618 * 84.99618 * 6 5 3 20 20 H 1.08997 * 109.46823 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46849 * 299.99824 * 1 2 3 22 22 H 1.08997 * 109.47255 * 59.99889 * 1 2 3 23 23 H 0.97003 * 119.99991 * 359.97438 * 5 3 2 24 24 H 1.09005 * 109.47254 * 324.99708 * 6 5 3 25 25 H 1.09000 * 109.47603 * 179.97438 * 7 6 5 26 26 H 1.08998 * 109.47444 * 59.99493 * 7 6 5 27 27 H 1.09004 * 109.47166 * 179.97438 * 8 7 6 28 28 H 1.09005 * 109.46988 * 60.00077 * 8 7 6 29 29 H 1.08997 * 109.47279 * 300.00213 * 9 8 7 30 30 H 0.97000 * 119.99468 * 179.97438 * 13 12 10 31 31 H 1.09005 * 109.46932 * 60.00069 * 18 9 8 32 32 H 1.08998 * 109.47453 * 180.02562 * 18 9 8 33 33 H 1.09000 * 109.47301 * 179.97438 * 19 6 5 34 34 H 1.08999 * 109.47498 * 300.00561 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2703 -0.0005 6 6 4.0742 2.5756 0.0000 7 6 5.4703 2.4369 -0.6103 8 6 6.2920 1.4456 0.2162 9 6 6.4121 1.9562 1.6534 10 6 7.2210 0.9795 2.4676 11 1 7.6100 0.0839 2.0062 12 6 7.4634 1.2288 3.8018 13 7 6.9933 2.3216 4.3626 14 14 8.4666 0.0185 4.8108 15 1 8.8818 -1.1186 3.9505 16 1 9.6720 0.7004 5.3466 17 1 7.6429 -0.4889 5.9375 18 6 5.0160 2.0950 2.2637 19 6 4.1942 3.0863 1.4372 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 3.9375 0.4568 -0.0005 24 1 3.4888 3.2819 -0.5888 25 1 5.9650 3.4082 -0.6103 26 1 5.3847 2.0731 -1.6342 27 1 7.2865 1.3464 -0.2189 28 1 5.7972 0.4743 0.2158 29 1 6.9069 2.9274 1.6538 30 1 7.1636 2.4967 5.3013 31 1 4.5211 1.1237 2.2633 32 1 5.1015 2.4592 3.2875 33 1 4.6895 4.0573 1.4376 34 1 3.1996 3.1850 1.8721 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259155556.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:19 Heat of formation + Delta-G solvation = -102.624333 kcal Electronic energy + Delta-G solvation = -16413.080061 eV Core-core repulsion = 13731.227635 eV Total energy + Delta-G solvation = -2681.852426 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.26797 -38.19117 -35.97234 -33.87157 -32.07519 -29.86247 -29.18547 -27.26181 -24.72329 -21.87550 -21.62391 -20.68042 -18.60555 -18.33042 -16.39927 -16.33688 -16.23624 -14.85277 -14.46473 -14.27526 -13.88996 -13.38536 -12.99839 -12.75055 -12.17355 -11.96922 -11.71384 -11.49601 -11.41054 -10.90309 -10.67047 -10.61658 -10.32857 -10.32304 -10.13872 -9.97066 -9.42402 -9.13967 -8.64356 -8.55748 -8.28569 -5.97514 -4.03945 2.50539 3.13204 3.29455 3.37945 3.41106 4.44066 4.58584 5.19830 5.26353 5.31728 5.33030 5.49524 5.52942 5.60103 6.00287 6.19547 6.25579 6.26920 6.44941 6.60129 6.61449 6.69735 6.84718 6.87965 7.08919 7.25418 7.52082 7.76007 7.78523 8.01361 8.16677 8.46898 8.64751 9.00505 9.60945 11.07892 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.033965 B = 0.007133 C = 0.006651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.179308 B = 3924.224674 C = 4209.010863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.377 6.377 3 C 0.644 3.356 4 O -0.582 6.582 5 N -0.690 5.690 6 C 0.166 3.834 7 C -0.126 4.126 8 C -0.110 4.110 9 C 0.047 3.953 10 C -0.513 4.513 11 H 0.054 0.946 12 C 0.061 3.939 13 N -0.889 5.889 14 Si 0.888 3.112 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.285 1.285 18 C -0.107 4.107 19 C -0.132 4.132 20 H 0.098 0.902 21 H 0.061 0.939 22 H 0.059 0.941 23 H 0.407 0.593 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.027 0.973 30 H 0.259 0.741 31 H 0.033 0.967 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.898 -2.592 -8.416 11.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.291 6.291 3 C 0.396 3.604 4 O -0.472 6.472 5 N -0.349 5.349 6 C 0.063 3.937 7 C -0.163 4.163 8 C -0.148 4.148 9 C 0.029 3.971 10 C -0.551 4.551 11 H 0.072 0.928 12 C -0.140 4.140 13 N -0.528 5.528 14 Si 0.716 3.284 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.145 4.145 19 C -0.171 4.171 20 H 0.116 0.884 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.244 0.756 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.276 -2.022 -8.250 11.860 hybrid contribution 0.569 -0.967 0.729 1.338 sum -7.707 -2.989 -7.521 11.176 Atomic orbital electron populations 1.23100 0.75103 1.02994 1.02461 1.86250 1.23718 1.31699 1.87393 1.18216 0.83858 0.81867 0.76449 1.90950 1.64813 1.34818 1.56592 1.44944 1.02306 1.11273 1.76422 1.21044 0.92512 0.81943 0.98199 1.21880 0.94327 1.01803 0.98338 1.21658 0.97885 0.96886 0.98374 1.18686 0.92931 0.96614 0.88902 1.21250 1.32369 1.06824 0.94656 0.92762 1.24972 0.95832 0.95270 0.97951 1.69892 1.45611 1.25135 1.12194 0.86602 0.80062 0.81420 0.80287 1.19858 1.21105 1.21143 1.21582 0.95487 0.95896 1.01522 1.22052 1.00239 1.00416 0.94392 0.88370 0.92015 0.92202 0.75606 0.90493 0.90535 0.92747 0.92953 0.93589 0.95532 0.93139 0.94819 0.89125 0.91648 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.66 10.56 101.05 1.07 1.72 16 2 O -0.38 -5.74 10.62 -40.34 -0.43 -6.17 16 3 C 0.64 11.31 8.71 54.06 0.47 11.78 16 4 O -0.58 -11.58 15.79 -19.27 -0.30 -11.88 16 5 N -0.69 -11.58 4.24 -58.73 -0.25 -11.83 16 6 C 0.17 2.84 2.78 -67.94 -0.19 2.65 16 7 C -0.13 -2.01 5.61 -26.73 -0.15 -2.16 16 8 C -0.11 -2.10 4.97 -26.73 -0.13 -2.23 16 9 C 0.05 1.11 2.10 -91.77 -0.19 0.92 16 10 C -0.51 -13.66 8.56 -34.44 -0.29 -13.96 16 11 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 12 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 13 N -0.89 -25.16 11.33 55.43 0.63 -24.53 16 14 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 C -0.11 -2.46 4.82 -26.73 -0.13 -2.59 16 19 C -0.13 -2.61 5.60 -26.73 -0.15 -2.76 16 20 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.41 6.45 6.98 -40.82 -0.28 6.16 16 24 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 25 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.84 6.51 -51.93 -0.34 0.51 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.03 0.78 7.60 -51.93 -0.39 0.38 16 32 H 0.09 2.40 6.08 -51.93 -0.32 2.08 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 275.92 15.07 4.16 4.16 Total: -1.00 -29.97 275.92 -6.08 -36.05 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -5.07 Total: 3.20 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 0.21 Total: -5.06 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.38 Total: -36.36 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.73 Total: -18.05 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.97 -6.08 -36.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259155556.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.572 kcal (2) G-P(sol) polarization free energy of solvation -29.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds