Wall clock time and date at job start Mon Mar 30 2020 03:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00064 * 2 1 4 4 H 1.48505 * 109.47144 * 270.00472 * 3 2 1 5 5 H 1.48507 * 109.46867 * 30.00145 * 3 2 1 6 6 H 1.48496 * 109.47175 * 150.00220 * 3 2 1 7 7 C 1.37878 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99906 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99680 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46801 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47398 * 305.00045 * 10 9 7 12 12 N 1.46896 * 109.47053 * 65.00291 * 10 9 7 13 13 C 1.52997 * 109.47060 * 184.99876 * 10 9 7 14 14 H 1.09002 * 109.47196 * 65.00121 * 13 10 9 15 15 O 1.42907 * 109.47171 * 305.00201 * 13 10 9 16 16 C 1.52997 * 109.47504 * 185.00270 * 13 10 9 17 17 C 1.53000 * 109.46704 * 300.00016 * 16 13 10 18 18 C 1.53005 * 109.47029 * 179.97438 * 17 16 13 19 19 C 1.53001 * 109.46939 * 59.99699 * 18 17 16 20 20 C 1.52991 * 109.47684 * 300.00395 * 19 18 17 21 21 C 1.52997 * 109.47504 * 179.97438 * 16 13 10 22 22 H 0.96998 * 119.99928 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47083 * 59.99880 * 9 7 2 24 24 H 1.08991 * 109.46995 * 299.99937 * 9 7 2 25 25 H 1.00900 * 111.00550 * 59.99664 * 12 10 9 26 26 H 1.00896 * 111.00310 * 183.95250 * 12 10 9 27 27 H 0.96693 * 114.00161 * 300.00046 * 15 13 10 28 28 H 1.09002 * 109.47016 * 59.99741 * 16 13 10 29 29 H 1.08993 * 109.47376 * 299.99617 * 17 16 13 30 30 H 1.08992 * 109.47261 * 60.00195 * 17 16 13 31 31 H 1.09002 * 109.47110 * 299.99981 * 18 17 16 32 32 H 1.08994 * 109.47689 * 180.02562 * 18 17 16 33 33 H 1.09003 * 109.47255 * 179.97438 * 19 18 17 34 34 H 1.09006 * 109.46733 * 60.00638 * 19 18 17 35 35 H 1.09006 * 109.47233 * 299.99936 * 20 19 18 36 36 H 1.09004 * 109.47763 * 179.97438 * 20 19 18 37 37 H 1.09004 * 109.47346 * 300.00076 * 21 16 13 38 38 H 1.09002 * 109.47196 * 59.99850 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 1 2.9289 -3.5548 -0.8441 12 7 3.0093 -3.6544 1.2528 13 6 1.4845 -4.9834 -0.1275 14 1 0.9890 -5.0266 -1.0975 15 8 0.5068 -5.0708 0.9111 16 6 2.4657 -6.1508 -0.0037 17 6 3.5124 -6.0572 -1.1156 18 6 4.4941 -7.2242 -0.9915 19 6 3.7336 -8.5459 -1.1167 20 6 2.6868 -8.6395 -0.0049 21 6 1.7047 -7.4722 -0.1287 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8896 25 1 2.3977 -3.7526 2.0493 26 1 3.7170 -4.3735 1.2496 27 1 0.8772 -5.0387 1.8037 28 1 2.9611 -6.1076 0.9663 29 1 3.0171 -6.1004 -2.0855 30 1 4.0545 -5.1159 -1.0261 31 1 4.9895 -7.1807 -0.0215 32 1 5.2401 -7.1574 -1.7833 33 1 4.4329 -9.3774 -1.0287 34 1 3.2382 -8.5895 -2.0868 35 1 3.1821 -8.5959 0.9651 36 1 2.1446 -9.5809 -0.0944 37 1 0.9592 -7.5386 0.6637 38 1 1.2090 -7.5156 -1.0985 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259605837.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:36 Heat of formation + Delta-G solvation = -88.342934 kcal Electronic energy + Delta-G solvation = -16647.428143 eV Core-core repulsion = 14102.028099 eV Total energy + Delta-G solvation = -2545.400044 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.47402 -36.79066 -33.95433 -32.34095 -30.92243 -30.65361 -28.38124 -25.88456 -23.40118 -22.57579 -21.15178 -19.79439 -19.45155 -16.44612 -16.19841 -15.47295 -15.34111 -14.70273 -14.36366 -14.16374 -14.05681 -13.59150 -12.90714 -12.52237 -12.22145 -12.14246 -11.91346 -11.54586 -11.16708 -11.12781 -10.88534 -10.77063 -10.54699 -10.46363 -10.34384 -10.19325 -9.88700 -9.73095 -9.09386 -8.97557 -8.22919 -7.73566 -5.84457 -3.83101 3.41005 3.46969 3.52216 4.55780 4.63249 4.65182 4.74866 4.92160 5.10973 5.25962 5.30543 5.40680 5.47342 5.52274 5.53730 5.55787 5.64129 5.81826 5.85782 5.99695 6.02084 6.13523 6.14506 6.18318 6.29639 6.34615 6.42579 6.60432 6.96377 7.62253 7.84998 7.98219 8.07817 8.15601 8.19873 8.62146 9.23652 9.78398 11.27188 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.047723 B = 0.006033 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.577524 B = 4639.930306 C = 4962.179584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.049 3.951 3 Si 0.890 3.110 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.494 4.494 8 H 0.059 0.941 9 C 0.036 3.964 10 C 0.068 3.932 11 H 0.075 0.925 12 N -0.824 5.824 13 C 0.072 3.928 14 H 0.093 0.907 15 O -0.552 6.552 16 C -0.118 4.118 17 C -0.116 4.116 18 C -0.118 4.118 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.109 4.109 22 H 0.257 0.743 23 H 0.016 0.984 24 H 0.021 0.979 25 H 0.329 0.671 26 H 0.319 0.681 27 H 0.361 0.639 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.544 -16.474 -0.191 17.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.150 4.150 3 Si 0.718 3.282 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.532 4.532 8 H 0.077 0.923 9 C -0.001 4.001 10 C -0.043 4.043 11 H 0.093 0.907 12 N -0.354 5.354 13 C 0.011 3.989 14 H 0.111 0.889 15 O -0.356 6.356 16 C -0.137 4.137 17 C -0.154 4.154 18 C -0.155 4.155 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.146 4.146 22 H 0.066 0.934 23 H 0.034 0.966 24 H 0.040 0.960 25 H 0.143 0.857 26 H 0.131 0.869 27 H 0.207 0.793 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.209 -15.638 -0.916 16.851 hybrid contribution 0.443 0.011 0.539 0.698 sum 6.652 -15.627 -0.377 16.988 Atomic orbital electron populations 1.69982 1.05974 1.26179 1.52137 1.25027 0.94773 0.99089 0.96102 0.86630 0.79903 0.83830 0.77796 1.21027 1.21552 1.19954 1.21203 0.93227 0.90402 1.48385 0.92253 1.19024 0.92855 0.90768 0.97464 1.22333 0.95852 0.94134 0.92012 0.90657 1.58752 1.17926 1.54425 1.04257 1.22966 0.89646 0.94652 0.91683 0.88909 1.86621 1.35716 1.96460 1.16829 1.21880 0.96700 0.95870 0.99270 1.21592 0.96610 0.98565 0.98631 1.21520 0.97735 0.94640 1.01610 1.21541 0.97796 0.97324 0.99040 1.21551 0.97117 0.98258 0.98718 1.21499 0.97484 0.93473 1.02185 0.93352 0.96605 0.96030 0.85736 0.86870 0.79261 0.91563 0.91901 0.91019 0.92189 0.92201 0.92536 0.92165 0.92337 0.92443 0.91602 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.88 13.29 55.43 0.74 -27.15 16 2 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 3 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.49 -14.14 8.84 -34.44 -0.30 -14.44 16 8 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 9 C 0.04 0.93 4.34 -27.88 -0.12 0.81 16 10 C 0.07 1.33 2.19 -67.72 -0.15 1.18 16 11 H 0.08 1.51 6.71 -51.93 -0.35 1.16 16 12 N -0.82 -14.45 8.73 -4.67 -0.04 -14.49 16 13 C 0.07 1.17 2.46 -26.73 -0.07 1.11 16 14 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 15 O -0.55 -9.53 11.88 -35.23 -0.42 -9.95 16 16 C -0.12 -1.50 1.50 -90.62 -0.14 -1.63 16 17 C -0.12 -1.41 4.85 -26.73 -0.13 -1.54 16 18 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 19 C -0.12 -1.14 5.92 -26.74 -0.16 -1.30 16 20 C -0.12 -1.19 5.92 -26.71 -0.16 -1.34 16 21 C -0.11 -1.29 5.06 -26.71 -0.14 -1.42 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.02 0.60 7.73 -51.93 -0.40 0.20 16 25 H 0.33 5.49 7.67 -39.29 -0.30 5.19 16 26 H 0.32 4.65 7.29 -39.29 -0.29 4.36 16 27 H 0.36 5.18 7.71 45.56 0.35 5.53 16 28 H 0.07 0.81 6.70 -51.93 -0.35 0.46 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.95 6.54 -51.93 -0.34 0.61 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.82 7.68 -51.93 -0.40 0.42 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 292.73 15.07 4.41 4.41 Total: -1.00 -31.36 292.73 -7.79 -39.14 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -5.84 Total: 9.21 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -1.61 Total: -18.58 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.70 Total: -41.64 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -0.42 Total: -9.95 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.36 -7.79 -39.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259605837.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.199 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds