Wall clock time and date at job start Mon Mar 30 2020 03:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00064 * 2 1 4 4 H 1.48505 * 109.47144 * 270.00472 * 3 2 1 5 5 H 1.48507 * 109.46867 * 30.00145 * 3 2 1 6 6 H 1.48496 * 109.47175 * 150.00220 * 3 2 1 7 7 C 1.37878 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99906 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99680 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46801 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47398 * 305.00045 * 10 9 7 12 12 N 1.46896 * 109.47053 * 65.00291 * 10 9 7 13 13 C 1.52997 * 109.47060 * 184.99876 * 10 9 7 14 14 H 1.09002 * 109.47196 * 65.00121 * 13 10 9 15 15 O 1.42907 * 109.47171 * 305.00201 * 13 10 9 16 16 C 1.52997 * 109.47504 * 185.00270 * 13 10 9 17 17 C 1.53000 * 109.46704 * 300.00016 * 16 13 10 18 18 C 1.53005 * 109.47029 * 179.97438 * 17 16 13 19 19 C 1.53001 * 109.46939 * 59.99699 * 18 17 16 20 20 C 1.52991 * 109.47684 * 300.00395 * 19 18 17 21 21 C 1.52997 * 109.47504 * 179.97438 * 16 13 10 22 22 H 0.96998 * 119.99928 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47083 * 59.99880 * 9 7 2 24 24 H 1.08991 * 109.46995 * 299.99937 * 9 7 2 25 25 H 1.00900 * 111.00550 * 59.99664 * 12 10 9 26 26 H 1.00896 * 111.00310 * 183.95250 * 12 10 9 27 27 H 0.96693 * 114.00161 * 300.00046 * 15 13 10 28 28 H 1.09002 * 109.47016 * 59.99741 * 16 13 10 29 29 H 1.08993 * 109.47376 * 299.99617 * 17 16 13 30 30 H 1.08992 * 109.47261 * 60.00195 * 17 16 13 31 31 H 1.09002 * 109.47110 * 299.99981 * 18 17 16 32 32 H 1.08994 * 109.47689 * 180.02562 * 18 17 16 33 33 H 1.09003 * 109.47255 * 179.97438 * 19 18 17 34 34 H 1.09006 * 109.46733 * 60.00638 * 19 18 17 35 35 H 1.09006 * 109.47233 * 299.99936 * 20 19 18 36 36 H 1.09004 * 109.47763 * 179.97438 * 20 19 18 37 37 H 1.09004 * 109.47346 * 300.00076 * 21 16 13 38 38 H 1.09002 * 109.47196 * 59.99850 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 1 2.9289 -3.5548 -0.8441 12 7 3.0093 -3.6544 1.2528 13 6 1.4845 -4.9834 -0.1275 14 1 0.9890 -5.0266 -1.0975 15 8 0.5068 -5.0708 0.9111 16 6 2.4657 -6.1508 -0.0037 17 6 3.5124 -6.0572 -1.1156 18 6 4.4941 -7.2242 -0.9915 19 6 3.7336 -8.5459 -1.1167 20 6 2.6868 -8.6395 -0.0049 21 6 1.7047 -7.4722 -0.1287 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8896 25 1 2.3977 -3.7526 2.0493 26 1 3.7170 -4.3735 1.2496 27 1 0.8772 -5.0387 1.8037 28 1 2.9611 -6.1076 0.9663 29 1 3.0171 -6.1004 -2.0855 30 1 4.0545 -5.1159 -1.0261 31 1 4.9895 -7.1807 -0.0215 32 1 5.2401 -7.1574 -1.7833 33 1 4.4329 -9.3774 -1.0287 34 1 3.2382 -8.5895 -2.0868 35 1 3.1821 -8.5959 0.9651 36 1 2.1446 -9.5809 -0.0944 37 1 0.9592 -7.5386 0.6637 38 1 1.2090 -7.5156 -1.0985 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259605837.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:35 Heat of formation + Delta-G solvation = -110.980387 kcal Electronic energy + Delta-G solvation = -16648.409776 eV Core-core repulsion = 14102.028099 eV Total energy + Delta-G solvation = -2546.381677 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.66711 -37.96442 -35.67832 -34.29964 -32.02821 -31.55332 -30.28457 -27.45152 -25.09841 -23.53653 -22.43258 -21.02394 -20.68679 -18.50308 -17.52768 -17.10433 -16.55266 -16.33041 -15.92236 -15.28076 -15.00260 -14.72586 -14.33457 -14.13922 -13.61057 -13.33358 -13.16777 -13.07511 -12.83340 -12.50847 -12.44815 -12.12644 -12.00569 -11.79043 -11.70230 -11.40675 -11.28420 -11.14926 -10.85491 -10.57225 -10.50079 -9.20093 -8.10410 -6.17274 1.41328 1.42743 1.54479 2.46712 3.22114 3.44482 3.60305 3.82767 3.87710 3.96723 4.15721 4.28730 4.36889 4.46708 4.50947 4.62900 4.65159 4.71012 4.81508 4.86091 5.00781 5.12363 5.21969 5.26688 5.29228 5.31219 5.42392 5.47687 5.51717 5.59485 5.74303 5.90627 6.31893 6.51534 6.81115 6.85020 6.98708 7.49464 9.01365 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.047723 B = 0.006033 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.577524 B = 4639.930306 C = 4962.179584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.009 4.009 3 Si 0.961 3.039 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.506 4.506 8 H 0.059 0.941 9 C 0.042 3.958 10 C 0.084 3.916 11 H 0.071 0.929 12 N -0.830 5.830 13 C 0.080 3.920 14 H 0.074 0.926 15 O -0.569 6.569 16 C -0.104 4.104 17 C -0.117 4.117 18 C -0.114 4.114 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.107 4.107 22 H 0.259 0.741 23 H -0.020 1.020 24 H -0.006 1.006 25 H 0.336 0.664 26 H 0.341 0.659 27 H 0.374 0.626 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.474 -17.443 0.231 19.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.205 4.205 3 Si 0.787 3.213 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.544 4.544 8 H 0.078 0.922 9 C 0.005 3.995 10 C -0.028 4.028 11 H 0.089 0.911 12 N -0.362 5.362 13 C 0.019 3.981 14 H 0.092 0.908 15 O -0.375 6.375 16 C -0.123 4.123 17 C -0.154 4.154 18 C -0.151 4.151 19 C -0.156 4.156 20 C -0.152 4.152 21 C -0.145 4.145 22 H 0.067 0.933 23 H -0.001 1.001 24 H 0.012 0.988 25 H 0.149 0.851 26 H 0.156 0.844 27 H 0.222 0.778 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.164 -16.630 -0.487 18.532 hybrid contribution -0.198 0.309 0.412 0.552 sum 7.965 -16.320 -0.075 18.161 Atomic orbital electron populations 1.70126 1.07735 1.27195 1.53246 1.25947 0.95647 1.03151 0.95731 0.85501 0.78650 0.78989 0.78166 1.20111 1.21200 1.18981 1.21556 0.93350 0.91705 1.47804 0.92247 1.18854 0.93358 0.92905 0.94382 1.21911 0.94629 0.93315 0.92926 0.91098 1.58581 1.18329 1.55834 1.03458 1.22780 0.89747 0.94704 0.90843 0.90756 1.86586 1.36622 1.96461 1.17821 1.21726 0.95842 0.94511 1.00176 1.21587 0.96721 0.99162 0.97969 1.21500 0.97330 0.93894 1.02377 1.21547 0.97889 0.97476 0.98690 1.21525 0.96778 0.97583 0.99301 1.21468 0.97773 0.93754 1.01456 0.93279 1.00128 0.98780 0.85065 0.84430 0.77775 0.90308 0.92603 0.92150 0.91437 0.91383 0.90834 0.92481 0.91583 0.91408 0.92253 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.45 13.29 21.45 0.28 -59.16 16 2 C -0.01 -0.53 5.46 84.66 0.46 -0.06 16 3 Si 0.96 46.18 29.54 68.60 2.03 48.20 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.51 -29.36 8.84 25.60 0.23 -29.14 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 9 C 0.04 2.27 4.34 29.85 0.13 2.40 16 10 C 0.08 3.30 2.19 44.92 0.10 3.40 16 11 H 0.07 2.85 6.71 -2.39 -0.02 2.84 16 12 N -0.83 -28.24 8.73 -168.69 -1.47 -29.71 16 13 C 0.08 2.65 2.46 30.59 0.08 2.72 16 14 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 15 O -0.57 -19.77 11.88 -148.98 -1.77 -21.54 16 16 C -0.10 -2.49 1.50 -10.80 -0.02 -2.50 16 17 C -0.12 -2.66 4.85 30.60 0.15 -2.51 16 18 C -0.11 -2.01 5.92 30.60 0.18 -1.83 16 19 C -0.12 -1.92 5.92 30.59 0.18 -1.74 16 20 C -0.11 -1.97 5.92 30.61 0.18 -1.78 16 21 C -0.11 -2.37 5.06 30.61 0.15 -2.21 16 22 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 23 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 24 H -0.01 -0.36 7.73 -2.39 -0.02 -0.38 16 25 H 0.34 10.86 7.67 -89.69 -0.69 10.17 16 26 H 0.34 9.20 7.29 -89.70 -0.65 8.55 16 27 H 0.37 10.56 7.71 -74.06 -0.57 9.99 16 28 H 0.08 1.72 6.70 -2.39 -0.02 1.70 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.51 6.54 -2.39 -0.02 1.50 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 1.40 7.68 -2.39 -0.02 1.38 16 38 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -67.96 292.73 0.03 -67.93 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: -0.86 Total: 27.55 kcal Atomic # 6 Polarization: -35.09 SS G_CDS: 1.82 Total: -33.27 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -1.19 Total: -88.88 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -1.77 Total: -21.54 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -67.96 0.03 -67.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259605837.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.046 kcal (2) G-P(sol) polarization free energy of solvation -67.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds