Wall clock time and date at job start Mon Mar 30 2020 03:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46906 * 110.99570 * 2 1 4 4 C 1.50700 * 109.47101 * 293.95176 * 3 2 1 5 5 H 1.07997 * 120.00052 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00071 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00304 * 179.97438 * 6 4 3 8 8 Si 1.86807 * 120.00093 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.46906 * 90.00194 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00042 * 8 6 4 11 11 H 1.48500 * 109.46895 * 330.00409 * 8 6 4 12 12 C 1.46896 * 111.00175 * 123.94737 * 2 1 3 13 13 C 1.53005 * 109.46791 * 66.05197 * 12 2 1 14 14 H 1.09002 * 112.96536 * 304.66656 * 13 12 2 15 15 C 1.53949 * 113.76911 * 172.99000 * 13 12 2 16 16 C 1.53944 * 86.28889 * 221.97901 * 15 13 12 17 17 N 1.47575 * 113.87132 * 76.44483 * 13 12 2 18 18 C 1.34780 * 134.49153 * 318.95582 * 17 13 12 19 19 N 1.34781 * 120.00038 * 180.02562 * 18 17 13 20 20 O 1.21581 * 120.00224 * 359.97438 * 18 17 13 21 21 H 1.08999 * 109.47844 * 296.04786 * 1 2 3 22 22 H 1.08999 * 109.47386 * 56.05216 * 1 2 3 23 23 H 1.09010 * 109.46909 * 176.04494 * 1 2 3 24 24 H 1.08994 * 109.47430 * 53.95299 * 3 2 1 25 25 H 1.09006 * 109.47291 * 173.95225 * 3 2 1 26 26 H 0.97002 * 120.00413 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.47538 * 306.05714 * 12 2 1 28 28 H 1.08998 * 109.47650 * 186.04794 * 12 2 1 29 29 H 1.08997 * 113.73805 * 336.32114 * 15 13 12 30 30 H 1.08993 * 113.74231 * 107.63369 * 15 13 12 31 31 H 1.09000 * 113.77258 * 137.90348 * 16 15 13 32 32 H 1.08998 * 113.77387 * 269.19671 * 16 15 13 33 33 H 0.96997 * 119.99886 * 359.97438 * 19 18 17 34 34 H 0.97003 * 120.00006 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0746 1.5112 -2.0488 6 6 2.0274 3.3491 -1.5289 7 7 1.7150 3.9386 -2.6623 8 14 3.0005 4.2760 -0.2314 9 1 4.4529 4.0626 -0.4556 10 1 2.6931 5.7259 -0.3238 11 1 2.6291 3.7761 1.1168 12 6 1.9954 -0.7658 1.1376 13 6 1.6315 -2.2425 0.9704 14 1 0.5611 -2.4051 0.8444 15 6 2.2798 -3.1640 2.0195 16 6 2.5411 -4.1380 0.8564 17 7 2.4620 -2.9537 -0.0207 18 6 2.9515 -2.6455 -1.2381 19 7 3.7002 -3.5424 -1.9102 20 8 2.7171 -1.5588 -1.7303 21 1 -0.3635 0.4512 0.9232 22 1 -0.3634 0.5739 -0.8525 23 1 -0.3633 -1.0253 -0.0709 24 1 1.5609 1.9274 0.8308 25 1 3.0796 1.3446 0.1083 26 1 1.9895 4.8548 -2.8243 27 1 1.5610 -0.3872 2.0628 28 1 3.0797 -0.6609 1.1757 29 1 3.1881 -2.7547 2.4617 30 1 1.5787 -3.5451 2.7619 31 1 3.5282 -4.5995 0.8832 32 1 1.7389 -4.8586 0.6980 33 1 3.8869 -4.4095 -1.5177 34 1 4.0522 -3.3207 -2.7865 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259877324.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:52 Heat of formation + Delta-G solvation = 27.390775 kcal Electronic energy + Delta-G solvation = -16442.312123 eV Core-core repulsion = 13798.390326 eV Total energy + Delta-G solvation = -2643.921797 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.09699 -37.48291 -36.04869 -33.03281 -32.25675 -29.26101 -28.61461 -27.17603 -24.93574 -22.38948 -21.97313 -19.98104 -19.01825 -17.62059 -16.69906 -16.52912 -15.62136 -14.78242 -14.45074 -14.09556 -13.97378 -13.79807 -13.11139 -12.81663 -12.23142 -12.13538 -11.95881 -11.62621 -11.37490 -11.08032 -10.84823 -10.67934 -10.34514 -10.09088 -9.66940 -9.31929 -9.14995 -9.06055 -8.38558 -8.27625 -6.96139 -5.86058 -3.80053 2.92252 3.39745 3.45512 3.48202 3.84871 4.36991 4.46527 4.57594 4.90609 5.02112 5.26066 5.36207 5.43832 5.49721 5.55114 5.64963 5.73078 6.02183 6.11289 6.26970 6.36321 6.49055 6.86773 7.03254 7.19270 7.24595 7.42083 7.82584 8.15240 8.31911 8.47688 8.90219 9.25966 9.29211 9.76680 11.27887 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.033793 B = 0.007826 C = 0.007196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.371381 B = 3577.016907 C = 3890.132153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.501 5.501 3 C 0.168 3.832 4 C -0.490 4.490 5 H 0.081 0.919 6 C 0.063 3.937 7 N -0.906 5.906 8 Si 0.874 3.126 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.270 1.270 12 C 0.052 3.948 13 C 0.165 3.835 14 H 0.087 0.913 15 C -0.150 4.150 16 C 0.099 3.901 17 N -0.654 5.654 18 C 0.705 3.295 19 N -0.877 5.877 20 O -0.518 6.518 21 H 0.005 0.995 22 H 0.078 0.922 23 H 0.042 0.958 24 H -0.019 1.019 25 H 0.019 0.981 26 H 0.260 0.740 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.385 0.615 34 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.137 -18.352 10.009 21.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.224 5.224 3 C 0.042 3.958 4 C -0.529 4.529 5 H 0.099 0.901 6 C -0.137 4.137 7 N -0.546 5.546 8 Si 0.701 3.299 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.195 1.195 12 C -0.078 4.078 13 C 0.061 3.939 14 H 0.104 0.896 15 C -0.189 4.189 16 C -0.025 4.025 17 N -0.398 5.398 18 C 0.406 3.594 19 N -0.447 5.447 20 O -0.388 6.388 21 H 0.024 0.976 22 H 0.096 0.904 23 H 0.061 0.939 24 H -0.001 1.001 25 H 0.037 0.963 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.211 0.789 34 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.136 -17.496 9.042 19.810 hybrid contribution 0.583 0.491 1.115 1.351 sum 2.719 -17.005 10.157 19.993 Atomic orbital electron populations 1.22256 0.89038 0.99375 1.00338 1.61898 1.06236 1.15781 1.38514 1.20097 0.94599 0.84230 0.96864 1.21056 1.34443 0.96605 1.00763 0.90075 1.24899 0.96097 0.97441 0.95255 1.69906 1.47728 1.13103 1.23912 0.86887 0.80977 0.79107 0.82883 1.20385 1.21390 1.19453 1.22249 1.00443 0.92119 0.92976 1.22680 0.95012 0.93386 0.82868 0.89572 1.23614 1.01988 0.96951 0.96350 1.22991 1.01231 0.90466 0.87801 1.49153 1.56028 1.17650 1.16947 1.15728 0.79608 0.84556 0.79544 1.43065 1.59658 1.18567 1.23375 1.91308 1.61080 1.20639 1.65780 0.97639 0.90370 0.93892 1.00103 0.96319 0.92984 0.95158 0.91229 0.89053 0.90073 0.90922 0.90583 0.78891 0.75812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 9.17 60.06 0.55 1.36 16 2 N -0.50 -11.68 2.83 -244.37 -0.69 -12.37 16 3 C 0.17 4.53 3.79 -4.97 -0.02 4.51 16 4 C -0.49 -15.28 9.01 -34.44 -0.31 -15.59 16 5 H 0.08 2.79 7.37 -52.49 -0.39 2.41 16 6 C 0.06 1.97 5.47 -17.82 -0.10 1.87 16 7 N -0.91 -29.64 13.96 55.43 0.77 -28.86 16 8 Si 0.87 23.04 27.47 -169.99 -4.67 18.37 16 9 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 10 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 11 H -0.27 -6.83 6.54 56.52 0.37 -6.46 16 12 C 0.05 0.94 4.66 -3.82 -0.02 0.92 16 13 C 0.16 2.35 4.06 -66.86 -0.27 2.07 16 14 H 0.09 1.20 6.60 -51.93 -0.34 0.86 16 15 C -0.15 -1.40 7.86 -25.80 -0.20 -1.61 16 16 C 0.10 0.88 8.44 -2.98 -0.03 0.86 16 17 N -0.65 -9.49 3.49 -176.92 -0.62 -10.11 16 18 C 0.71 12.54 8.93 -86.91 -0.78 11.76 16 19 N -0.88 -10.94 8.88 27.63 0.25 -10.70 16 20 O -0.52 -12.60 15.71 5.29 0.08 -12.52 16 21 H 0.01 0.10 8.14 -51.93 -0.42 -0.32 16 22 H 0.08 1.87 6.76 -51.93 -0.35 1.52 16 23 H 0.04 0.79 6.45 -51.92 -0.34 0.45 16 24 H -0.02 -0.49 7.18 -51.93 -0.37 -0.87 16 25 H 0.02 0.52 7.36 -51.93 -0.38 0.14 16 26 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 27 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 28 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 29 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.38 3.39 8.44 -40.82 -0.34 3.04 16 34 H 0.41 4.86 8.93 -40.82 -0.36 4.50 16 LS Contribution 278.59 15.07 4.20 4.20 Total: -1.00 -38.17 278.59 -6.84 -45.01 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -4.99 Total: 0.82 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -1.17 Total: 6.16 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: -0.29 Total: -62.04 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.08 Total: -12.52 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.67 Total: 18.37 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -38.17 -6.84 -45.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259877324.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.403 kcal (2) G-P(sol) polarization free energy of solvation -38.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds