Wall clock time and date at job start Mon Mar 30 2020 03:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36941 * 120.00037 * 2 1 4 4 H 1.07996 * 120.00102 * 204.58667 * 3 2 1 5 5 C 1.38816 * 119.99525 * 24.58598 * 3 2 1 6 6 N 1.31614 * 120.00358 * 10.09868 * 5 3 2 7 7 Si 1.86799 * 119.99851 * 190.09464 * 5 3 2 8 8 H 1.48507 * 109.47147 * 89.99934 * 7 5 3 9 9 H 1.48494 * 109.47604 * 210.00265 * 7 5 3 10 10 H 1.48506 * 109.47285 * 330.00133 * 7 5 3 11 11 C 1.46504 * 120.00274 * 180.02562 * 2 1 3 12 12 C 1.53038 * 109.45656 * 300.00143 * 11 2 1 13 13 C 1.53196 * 109.30727 * 181.38472 * 12 11 2 14 14 N 1.46925 * 108.77837 * 305.36122 * 13 12 11 15 15 C 1.34772 * 120.63310 * 233.58979 * 14 13 12 16 16 N 1.34776 * 120.00201 * 185.21967 * 15 14 13 17 17 O 1.21585 * 119.99851 * 5.22285 * 15 14 13 18 18 C 1.46928 * 118.73481 * 53.85903 * 14 13 12 19 19 C 1.53042 * 109.45608 * 60.06552 * 11 2 1 20 20 H 1.09006 * 109.46777 * 265.76075 * 1 2 3 21 21 H 1.08996 * 109.47497 * 25.75988 * 1 2 3 22 22 H 1.08997 * 109.47170 * 145.76122 * 1 2 3 23 23 H 0.97004 * 120.00249 * 180.02562 * 6 5 3 24 24 H 1.08993 * 109.44777 * 180.02562 * 11 2 1 25 25 H 1.09001 * 109.50352 * 61.43518 * 12 11 2 26 26 H 1.08998 * 109.52631 * 301.34793 * 12 11 2 27 27 H 1.09006 * 109.58348 * 185.57123 * 13 12 11 28 28 H 1.08998 * 109.70419 * 65.22516 * 13 12 11 29 29 H 0.96998 * 119.99560 * 354.90216 * 16 15 14 30 30 H 0.96998 * 120.00546 * 174.61698 * 16 15 14 31 31 H 1.08998 * 109.58402 * 65.92922 * 18 14 13 32 32 H 1.08999 * 109.58591 * 186.35261 * 18 14 13 33 33 H 1.08999 * 109.49794 * 298.56532 * 19 11 2 34 34 H 1.08996 * 109.49847 * 58.66543 * 19 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1563 1.2284 -0.3891 5 6 1.5500 2.3336 0.5002 6 7 0.4099 2.2495 1.1525 7 14 2.3610 3.9972 0.2476 8 1 1.8764 4.5966 -1.0218 9 1 2.0170 4.8929 1.3809 10 1 3.8346 3.8248 0.1827 11 6 2.1976 -1.2687 -0.0006 12 6 1.8277 -2.0715 1.2487 13 6 2.6214 -3.3818 1.2623 14 7 2.3851 -4.0910 -0.0026 15 6 1.9589 -5.3696 -0.0038 16 7 1.8470 -6.0415 -1.1667 17 8 1.6755 -5.9168 1.0443 18 6 2.6280 -3.3817 -1.2662 19 6 1.8289 -2.0697 -1.2514 20 1 -0.3633 -0.0760 1.0249 21 1 -0.3634 0.9255 -0.4466 22 1 -0.3633 -0.8495 -0.5782 23 1 -0.0094 3.0515 1.5017 24 1 3.2691 -1.0691 0.0000 25 1 0.7604 -2.2928 1.2363 26 1 2.0685 -1.4911 2.1393 27 1 2.2901 -4.0010 2.0959 28 1 3.6847 -3.1663 1.3673 29 1 2.0016 -5.5841 -2.0079 30 1 1.6159 -6.9836 -1.1623 31 1 3.6914 -3.1639 -1.3644 32 1 2.3010 -4.0009 -2.1015 33 1 0.7617 -2.2909 -1.2403 34 1 2.0710 -1.4877 -2.1406 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259892260.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:32 Heat of formation + Delta-G solvation = -3.836947 kcal Electronic energy + Delta-G solvation = -16459.634961 eV Core-core repulsion = 13814.359029 eV Total energy + Delta-G solvation = -2645.275933 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.09082 -37.49498 -35.00148 -33.70126 -31.93136 -30.50878 -29.55479 -25.98450 -24.85246 -22.87672 -22.22115 -20.24503 -18.95200 -18.01123 -16.77115 -16.73499 -15.27986 -15.05880 -14.68044 -14.04745 -13.87419 -13.44076 -13.28983 -13.04362 -12.32806 -12.25297 -11.73016 -11.41022 -10.94363 -10.84833 -10.80136 -10.34485 -10.21188 -10.14819 -9.97436 -9.84988 -9.64605 -9.57513 -8.52893 -8.35776 -6.71810 -5.73382 -3.19340 2.98191 3.32949 3.37639 3.43847 3.45375 4.20420 4.48069 5.05583 5.22879 5.37226 5.41791 5.53479 5.64438 5.79026 5.92275 6.06210 6.19879 6.28977 6.39425 6.50736 6.61817 6.83204 6.89834 6.99698 7.03829 7.07869 7.41949 7.72388 7.81318 7.98495 8.43045 8.73123 9.24967 9.87997 10.38612 11.32891 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.057053 B = 0.006336 C = 0.006218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.651851 B = 4418.340017 C = 4501.763155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.596 5.596 3 C -0.255 4.255 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.179 3.821 12 C -0.145 4.145 13 C 0.130 3.870 14 N -0.623 5.623 15 C 0.707 3.293 16 N -0.872 5.872 17 O -0.602 6.602 18 C 0.115 3.885 19 C -0.148 4.148 20 H 0.016 0.984 21 H 0.056 0.944 22 H -0.007 1.007 23 H 0.252 0.748 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.395 0.605 30 H 0.410 0.590 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.978 -11.494 -6.427 13.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.317 5.317 3 C -0.385 4.385 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.071 3.929 12 C -0.185 4.185 13 C 0.007 3.993 14 N -0.360 5.360 15 C 0.407 3.593 16 N -0.443 5.443 17 O -0.481 6.481 18 C -0.009 4.009 19 C -0.188 4.188 20 H 0.034 0.966 21 H 0.075 0.925 22 H 0.011 0.989 23 H 0.063 0.937 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.226 0.774 30 H 0.241 0.759 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.722 -11.513 -5.564 13.318 hybrid contribution 0.241 0.855 -0.555 1.047 sum 3.963 -10.659 -6.119 12.914 Atomic orbital electron populations 1.20733 0.82837 0.97017 0.97529 1.43947 1.01763 1.00174 1.85834 1.19238 0.99179 0.85883 1.34155 0.91491 1.25068 0.97839 0.98667 0.98074 1.70061 1.18666 1.27460 1.39089 0.86248 0.78861 0.84139 0.77216 1.21545 1.21753 1.20506 1.20278 0.95956 0.86070 0.90621 1.22492 1.00115 0.94518 1.01400 1.21589 0.99427 0.93437 0.84890 1.47344 1.69755 1.10774 1.08164 1.15881 0.77888 0.81438 0.84063 1.43166 1.78955 1.14606 1.07524 1.90923 1.57439 1.68791 1.30931 1.21770 1.00269 0.94034 0.84785 1.22544 1.00105 0.94714 1.01413 0.96598 0.92504 0.98891 0.93734 0.91934 0.92238 0.90626 0.89565 0.91951 0.77434 0.75921 0.91400 0.91349 0.91923 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.03 8.10 59.85 0.48 4.51 16 2 N -0.60 -14.56 2.81 -173.43 -0.49 -15.04 16 3 C -0.25 -6.85 9.57 -15.06 -0.14 -7.00 16 4 H 0.07 1.75 7.82 -52.49 -0.41 1.34 16 5 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 16 6 N -0.91 -26.38 10.70 55.49 0.59 -25.79 16 7 Si 0.91 21.59 29.57 -169.99 -5.03 16.56 16 8 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 C 0.18 3.50 2.55 -67.89 -0.17 3.32 16 12 C -0.14 -2.68 5.34 -26.61 -0.14 -2.83 16 13 C 0.13 2.06 6.44 -3.71 -0.02 2.03 16 14 N -0.62 -9.12 2.97 -178.23 -0.53 -9.65 16 15 C 0.71 10.80 8.57 -86.92 -0.75 10.05 16 16 N -0.87 -8.97 8.78 27.63 0.24 -8.72 16 17 O -0.60 -11.65 16.60 5.29 0.09 -11.56 16 18 C 0.12 1.42 6.42 -3.49 -0.02 1.40 16 19 C -0.15 -2.34 5.31 -26.39 -0.14 -2.48 16 20 H 0.02 0.42 7.83 -51.93 -0.41 0.01 16 21 H 0.06 1.52 6.73 -51.93 -0.35 1.17 16 22 H -0.01 -0.16 6.48 -51.93 -0.34 -0.50 16 23 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 24 H 0.06 1.22 7.87 -51.93 -0.41 0.81 16 25 H 0.06 1.19 7.72 -51.93 -0.40 0.79 16 26 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.09 1.45 7.00 -51.93 -0.36 1.08 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.40 3.04 6.32 -40.82 -0.26 2.78 16 30 H 0.41 3.53 8.93 -40.82 -0.36 3.16 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.64 5.64 -51.93 -0.29 0.34 16 33 H 0.06 1.07 6.75 -51.93 -0.35 0.72 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 270.11 15.07 4.07 4.07 Total: -1.00 -32.39 270.11 -6.81 -39.20 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -4.77 Total: 1.96 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -1.00 Total: 8.97 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -0.18 Total: -59.21 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.39 -6.81 -39.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259892260.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.360 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds