Wall clock time and date at job start Mon Mar 30 2020 03:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36941 * 120.00037 * 2 1 4 4 H 1.07996 * 120.00102 * 204.58667 * 3 2 1 5 5 C 1.38816 * 119.99525 * 24.58598 * 3 2 1 6 6 N 1.31614 * 120.00358 * 10.09868 * 5 3 2 7 7 Si 1.86799 * 119.99851 * 190.09464 * 5 3 2 8 8 H 1.48507 * 109.47147 * 89.99934 * 7 5 3 9 9 H 1.48494 * 109.47604 * 210.00265 * 7 5 3 10 10 H 1.48506 * 109.47285 * 330.00133 * 7 5 3 11 11 C 1.46504 * 120.00274 * 180.02562 * 2 1 3 12 12 C 1.53038 * 109.45656 * 300.00143 * 11 2 1 13 13 C 1.53196 * 109.30727 * 181.38472 * 12 11 2 14 14 N 1.46925 * 108.77837 * 305.36122 * 13 12 11 15 15 C 1.34772 * 120.63310 * 233.58979 * 14 13 12 16 16 N 1.34776 * 120.00201 * 185.21967 * 15 14 13 17 17 O 1.21585 * 119.99851 * 5.22285 * 15 14 13 18 18 C 1.46928 * 118.73481 * 53.85903 * 14 13 12 19 19 C 1.53042 * 109.45608 * 60.06552 * 11 2 1 20 20 H 1.09006 * 109.46777 * 265.76075 * 1 2 3 21 21 H 1.08996 * 109.47497 * 25.75988 * 1 2 3 22 22 H 1.08997 * 109.47170 * 145.76122 * 1 2 3 23 23 H 0.97004 * 120.00249 * 180.02562 * 6 5 3 24 24 H 1.08993 * 109.44777 * 180.02562 * 11 2 1 25 25 H 1.09001 * 109.50352 * 61.43518 * 12 11 2 26 26 H 1.08998 * 109.52631 * 301.34793 * 12 11 2 27 27 H 1.09006 * 109.58348 * 185.57123 * 13 12 11 28 28 H 1.08998 * 109.70419 * 65.22516 * 13 12 11 29 29 H 0.96998 * 119.99560 * 354.90216 * 16 15 14 30 30 H 0.96998 * 120.00546 * 174.61698 * 16 15 14 31 31 H 1.08998 * 109.58402 * 65.92922 * 18 14 13 32 32 H 1.08999 * 109.58591 * 186.35261 * 18 14 13 33 33 H 1.08999 * 109.49794 * 298.56532 * 19 11 2 34 34 H 1.08996 * 109.49847 * 58.66543 * 19 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1563 1.2284 -0.3891 5 6 1.5500 2.3336 0.5002 6 7 0.4099 2.2495 1.1525 7 14 2.3610 3.9972 0.2476 8 1 1.8764 4.5966 -1.0218 9 1 2.0170 4.8929 1.3809 10 1 3.8346 3.8248 0.1827 11 6 2.1976 -1.2687 -0.0006 12 6 1.8277 -2.0715 1.2487 13 6 2.6214 -3.3818 1.2623 14 7 2.3851 -4.0910 -0.0026 15 6 1.9589 -5.3696 -0.0038 16 7 1.8470 -6.0415 -1.1667 17 8 1.6755 -5.9168 1.0443 18 6 2.6280 -3.3817 -1.2662 19 6 1.8289 -2.0697 -1.2514 20 1 -0.3633 -0.0760 1.0249 21 1 -0.3634 0.9255 -0.4466 22 1 -0.3633 -0.8495 -0.5782 23 1 -0.0094 3.0515 1.5017 24 1 3.2691 -1.0691 0.0000 25 1 0.7604 -2.2928 1.2363 26 1 2.0685 -1.4911 2.1393 27 1 2.2901 -4.0010 2.0959 28 1 3.6847 -3.1663 1.3673 29 1 2.0016 -5.5841 -2.0079 30 1 1.6159 -6.9836 -1.1623 31 1 3.6914 -3.1639 -1.3644 32 1 2.3010 -4.0009 -2.1015 33 1 0.7617 -2.2909 -1.2403 34 1 2.0710 -1.4877 -2.1406 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259892260.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:32 Heat of formation + Delta-G solvation = -27.610218 kcal Electronic energy + Delta-G solvation = -16460.665848 eV Core-core repulsion = 13814.359029 eV Total energy + Delta-G solvation = -2646.306819 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.29440 -38.96739 -36.64930 -34.87511 -33.63071 -31.76928 -31.27183 -28.02200 -26.37345 -24.16498 -23.89332 -21.61962 -20.23561 -19.19474 -18.73963 -17.84314 -17.01116 -16.43586 -15.90579 -15.69711 -15.27232 -15.03333 -14.73948 -14.59577 -13.91886 -13.73981 -13.20845 -13.05563 -12.79261 -12.64232 -12.32102 -12.21076 -12.03568 -11.82262 -11.59312 -11.34636 -11.14130 -10.67757 -10.58045 -9.55226 -8.72321 -7.81647 -5.29541 1.49124 1.49492 1.58567 1.87347 2.15975 2.52859 3.27169 3.33969 3.63794 3.95148 4.08628 4.22058 4.34199 4.42585 4.58150 4.73503 4.82045 4.87130 4.96041 5.01995 5.11535 5.25760 5.38462 5.51766 5.61446 5.67978 5.71718 5.93843 6.06541 6.37894 6.96430 7.18064 7.65439 7.90626 8.36520 9.23554 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.057053 B = 0.006336 C = 0.006218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.651851 B = 4418.340017 C = 4501.763155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.611 5.611 3 C -0.259 4.259 4 H 0.076 0.924 5 C -0.057 4.057 6 N -0.944 5.944 7 Si 0.970 3.030 8 H -0.286 1.286 9 H -0.299 1.299 10 H -0.265 1.265 11 C 0.172 3.828 12 C -0.133 4.133 13 C 0.140 3.860 14 N -0.625 5.625 15 C 0.702 3.298 16 N -0.847 5.847 17 O -0.648 6.648 18 C 0.121 3.879 19 C -0.137 4.137 20 H -0.015 1.015 21 H 0.028 0.972 22 H 0.020 0.980 23 H 0.246 0.754 24 H 0.066 0.934 25 H 0.037 0.963 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.411 0.589 30 H 0.420 0.580 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.049 0.951 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.587 -12.599 -8.409 16.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.333 5.333 3 C -0.389 4.389 4 H 0.094 0.906 5 C -0.251 4.251 6 N -0.591 5.591 7 Si 0.799 3.201 8 H -0.213 1.213 9 H -0.226 1.226 10 H -0.190 1.190 11 C 0.066 3.934 12 C -0.173 4.173 13 C 0.016 3.984 14 N -0.362 5.362 15 C 0.401 3.599 16 N -0.419 5.419 17 O -0.531 6.531 18 C -0.002 4.002 19 C -0.177 4.177 20 H 0.004 0.996 21 H 0.047 0.953 22 H 0.038 0.962 23 H 0.056 0.944 24 H 0.084 0.916 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.245 0.755 30 H 0.253 0.747 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.068 0.932 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.365 -12.661 -7.621 15.721 hybrid contribution -0.255 1.138 0.034 1.167 sum 5.110 -11.523 -7.587 14.712 Atomic orbital electron populations 1.20398 0.83523 0.96566 0.95821 1.44197 1.01708 1.01485 1.85960 1.19636 0.99426 0.86922 1.32917 0.90647 1.25854 0.98605 1.02172 0.98474 1.70240 1.20303 1.27805 1.40736 0.85216 0.78595 0.79764 0.76555 1.21301 1.22638 1.19003 1.20544 0.95587 0.84662 0.92652 1.22292 0.99204 0.95757 1.00077 1.21369 0.99869 0.91557 0.85618 1.47341 1.69616 1.10842 1.08379 1.16092 0.77653 0.81537 0.84573 1.42910 1.77328 1.14976 1.06662 1.90900 1.59369 1.69786 1.33023 1.21913 1.01039 0.92446 0.84822 1.22366 0.99920 0.96125 0.99259 0.99627 0.95289 0.96168 0.94445 0.91619 0.94369 0.92994 0.90784 0.89888 0.75523 0.74684 0.89186 0.87407 0.93199 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.17 8.10 127.77 1.03 10.20 16 2 N -0.61 -29.91 2.81 -702.63 -1.97 -31.89 16 3 C -0.26 -13.86 9.57 84.03 0.80 -13.05 16 4 H 0.08 3.84 7.82 -2.91 -0.02 3.82 16 5 C -0.06 -3.14 5.10 84.86 0.43 -2.71 16 6 N -0.94 -56.42 10.70 21.65 0.23 -56.19 16 7 Si 0.97 44.60 29.57 68.60 2.03 46.62 16 8 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 9 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 11 C 0.17 6.53 2.55 45.02 0.12 6.64 16 12 C -0.13 -4.93 5.34 30.67 0.16 -4.77 16 13 C 0.14 4.26 6.44 86.36 0.56 4.81 16 14 N -0.62 -16.58 2.97 -836.06 -2.48 -19.06 16 15 C 0.70 19.66 8.57 179.06 1.53 21.19 16 16 N -0.85 -14.30 8.78 -184.75 -1.62 -15.92 16 17 O -0.65 -24.39 16.60 -3.98 -0.07 -24.45 16 18 C 0.12 2.46 6.42 86.51 0.56 3.02 16 19 C -0.14 -3.97 5.31 30.82 0.16 -3.81 16 20 H -0.01 -0.81 7.83 -2.38 -0.02 -0.83 16 21 H 0.03 1.58 6.73 -2.39 -0.02 1.57 16 22 H 0.02 0.88 6.48 -2.39 -0.02 0.87 16 23 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 24 H 0.07 2.44 7.87 -2.39 -0.02 2.43 16 25 H 0.04 1.55 7.72 -2.39 -0.02 1.54 16 26 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.07 2.47 7.00 -2.38 -0.02 2.45 16 28 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.41 4.32 6.32 -92.71 -0.59 3.74 16 30 H 0.42 5.82 8.93 -92.71 -0.83 5.00 16 31 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.11 1.40 5.64 -2.39 -0.01 1.38 16 33 H 0.05 1.58 6.75 -2.39 -0.02 1.57 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -71.71 270.11 1.18 -70.52 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -0.30 Total: 8.85 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: 5.36 Total: 21.52 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -5.84 Total: -123.06 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.07 Total: -24.45 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -71.71 1.18 -70.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259892260.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.914 kcal (2) G-P(sol) polarization free energy of solvation -71.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds