Wall clock time and date at job start Mon Mar 30 2020 03:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00358 * 2 1 4 4 C 1.34776 * 120.00041 * 180.02562 * 2 1 3 5 5 O 1.21586 * 119.99797 * 2.35280 * 4 2 1 6 6 N 1.34771 * 120.00296 * 182.35280 * 4 2 1 7 7 C 1.47584 * 134.49743 * 175.85615 * 6 4 2 8 8 C 1.53936 * 86.11956 * 155.35635 * 7 6 4 9 9 N 1.46502 * 113.74264 * 137.95243 * 8 7 6 10 10 C 1.46505 * 119.99974 * 302.30159 * 9 8 7 11 11 C 1.36936 * 120.00122 * 122.29692 * 9 8 7 12 12 H 1.07995 * 120.00349 * 9.01701 * 11 9 8 13 13 C 1.38815 * 120.00151 * 189.02174 * 11 9 8 14 14 N 1.31620 * 119.99912 * 9.54973 * 13 11 9 15 15 Si 1.86796 * 120.00285 * 189.55176 * 13 11 9 16 16 H 1.48503 * 109.47166 * 59.99507 * 15 13 11 17 17 H 1.48501 * 109.47436 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47209 * 300.00012 * 15 13 11 19 19 C 1.47819 * 134.45764 * 355.72229 * 6 4 2 20 20 H 1.09006 * 109.47053 * 269.99941 * 1 2 3 21 21 H 1.09004 * 109.47310 * 29.99426 * 1 2 3 22 22 H 1.08999 * 109.47283 * 149.99767 * 1 2 3 23 23 H 1.08995 * 109.47367 * 264.16452 * 3 2 1 24 24 H 1.09003 * 109.47052 * 24.16673 * 3 2 1 25 25 H 1.08998 * 109.47036 * 144.16044 * 3 2 1 26 26 H 1.09003 * 113.76593 * 41.05553 * 7 6 4 27 27 H 1.08997 * 113.76751 * 269.66450 * 7 6 4 28 28 H 1.09004 * 113.74871 * 269.15421 * 8 7 6 29 29 H 1.09000 * 109.46781 * 354.83097 * 10 9 8 30 30 H 1.08997 * 109.46975 * 234.83013 * 10 9 8 31 31 H 1.09002 * 109.47331 * 114.82892 * 10 9 8 32 32 H 0.97003 * 120.00257 * 180.02562 * 14 13 11 33 33 H 1.08997 * 113.76588 * 90.37403 * 19 6 4 34 34 H 1.09002 * 113.83521 * 318.92248 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5317 -2.2197 -0.0442 6 7 3.4857 -1.1678 0.0474 7 6 4.5171 -2.2195 0.1381 8 6 5.4643 -1.2015 -0.5222 9 7 6.8049 -1.1741 0.0680 10 6 6.9708 -0.8944 1.4965 11 6 7.9029 -1.4100 -0.7155 12 1 7.7974 -1.4716 -1.7886 13 6 9.1515 -1.5701 -0.1306 14 7 9.2562 -1.6834 1.1765 15 14 10.6832 -1.6247 -1.1985 16 1 10.8029 -0.3541 -1.9577 17 1 11.8805 -1.8014 -0.3381 18 1 10.5838 -2.7615 -2.1488 19 6 4.5228 -0.1146 0.0276 20 1 -0.3633 0.0000 1.0277 21 1 -0.3634 0.8901 -0.5138 22 1 -0.3634 -0.8899 -0.5139 23 1 2.4697 1.5311 -1.0223 24 1 1.5673 2.0522 0.4207 25 1 3.1007 1.1667 0.6017 26 1 4.3099 -3.0925 -0.4808 27 1 4.7928 -2.4773 1.1607 28 1 5.4803 -1.2586 -1.6106 29 1 6.0037 -0.6438 1.9323 30 1 7.6556 -0.0562 1.6254 31 1 7.3765 -1.7750 1.9945 32 1 10.1288 -1.7950 1.5854 33 1 4.8002 0.2473 1.0176 34 1 4.3202 0.6899 -0.6793 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259949499.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:14 Heat of formation + Delta-G solvation = 61.495903 kcal Electronic energy + Delta-G solvation = -16276.998212 eV Core-core repulsion = 13634.555324 eV Total energy + Delta-G solvation = -2642.442888 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.20964 -37.93410 -35.27065 -34.57859 -31.03943 -28.78412 -27.86167 -26.22682 -25.43242 -25.18480 -22.82784 -19.58276 -18.84419 -17.23431 -16.80624 -16.23969 -15.98600 -15.16311 -14.40565 -14.05933 -13.46326 -13.28330 -12.96233 -12.76827 -12.57371 -12.36227 -12.06868 -11.89282 -11.82040 -11.08632 -10.93941 -10.80617 -10.46527 -10.24373 -10.15926 -9.90407 -9.60341 -8.72670 -8.63954 -8.01799 -7.00567 -5.70526 -3.19408 2.74517 3.36875 3.41954 3.42855 3.46549 3.86617 4.44809 5.03611 5.11479 5.17287 5.32610 5.43459 5.50765 5.60158 5.63881 5.70594 5.73231 5.79502 5.85494 5.95875 6.14241 6.26576 6.60005 6.66058 6.79866 7.29210 7.42457 7.68351 7.84851 8.29298 8.34625 8.83525 9.16855 9.78387 10.20867 11.26487 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.059392 B = 0.005891 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.328141 B = 4751.544771 C = 4813.063035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.641 5.641 3 C 0.073 3.927 4 C 0.727 3.273 5 O -0.600 6.600 6 N -0.656 5.656 7 C 0.098 3.902 8 C 0.161 3.839 9 N -0.587 5.587 10 C 0.156 3.844 11 C -0.257 4.257 12 H 0.076 0.924 13 C 0.000 4.000 14 N -0.914 5.914 15 Si 0.912 3.088 16 H -0.285 1.285 17 H -0.290 1.290 18 H -0.283 1.283 19 C 0.070 3.930 20 H 0.047 0.953 21 H 0.064 0.936 22 H 0.075 0.925 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.000 1.000 30 H 0.030 0.970 31 H 0.062 0.938 32 H 0.252 0.748 33 H 0.085 0.915 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.267 6.803 -1.331 13.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.379 5.379 3 C -0.070 4.070 4 C 0.431 3.569 5 O -0.479 6.479 6 N -0.395 5.395 7 C -0.027 4.027 8 C 0.048 3.952 9 N -0.307 5.307 10 C 0.012 3.988 11 C -0.386 4.386 12 H 0.094 0.906 13 C -0.197 4.197 14 N -0.560 5.560 15 Si 0.742 3.258 16 H -0.211 1.211 17 H -0.216 1.216 18 H -0.210 1.210 19 C -0.054 4.054 20 H 0.066 0.934 21 H 0.083 0.917 22 H 0.093 0.907 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.113 0.887 29 H 0.018 0.982 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.594 6.209 -1.240 13.210 hybrid contribution 0.748 0.152 -0.365 0.847 sum -10.845 6.361 -1.605 12.675 Atomic orbital electron populations 1.21441 0.78347 1.02651 1.01231 1.46842 1.06562 1.05059 1.79477 1.22147 0.97875 0.85340 1.01636 1.15400 0.80296 0.83498 0.77714 1.90868 1.67102 1.30438 1.59512 1.49045 1.01689 1.12531 1.76239 1.24128 0.83432 0.93611 1.01574 1.22147 0.84055 0.91755 0.97197 1.44040 0.99790 1.80490 1.06386 1.21164 0.93828 1.01200 0.82586 1.19300 0.85774 1.43350 0.90133 0.90604 1.24888 0.98069 1.00882 0.95897 1.70128 1.22791 1.54793 1.08278 0.86220 0.82430 0.77976 0.79212 1.21107 1.21606 1.20962 1.24263 0.85735 0.94008 1.01439 0.93408 0.91728 0.90654 0.92969 0.91443 0.90218 0.91112 0.90296 0.88653 0.98170 0.95141 0.91930 0.93691 0.89710 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.22 10.43 59.84 0.62 1.84 16 2 N -0.64 -9.19 3.27 -195.34 -0.64 -9.83 16 3 C 0.07 0.80 9.08 59.85 0.54 1.35 16 4 C 0.73 13.41 8.51 -86.92 -0.74 12.67 16 5 O -0.60 -13.15 16.64 5.29 0.09 -13.06 16 6 N -0.66 -11.66 3.59 -184.09 -0.66 -12.33 16 7 C 0.10 1.86 8.36 -2.97 -0.02 1.84 16 8 C 0.16 3.09 4.54 -70.15 -0.32 2.77 16 9 N -0.59 -13.77 3.15 -175.30 -0.55 -14.32 16 10 C 0.16 3.62 8.01 59.85 0.48 4.10 16 11 C -0.26 -6.67 9.82 -15.06 -0.15 -6.82 16 12 H 0.08 1.90 7.78 -52.49 -0.41 1.49 16 13 C 0.00 -0.01 5.36 -17.43 -0.09 -0.10 16 14 N -0.91 -25.49 9.77 55.49 0.54 -24.95 16 15 Si 0.91 21.16 29.56 -169.99 -5.03 16.14 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 C 0.07 1.13 5.38 -2.84 -0.02 1.11 16 20 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 21 H 0.06 0.54 8.07 -51.93 -0.42 0.12 16 22 H 0.07 0.97 7.39 -51.93 -0.38 0.58 16 23 H 0.05 0.54 7.70 -51.93 -0.40 0.14 16 24 H 0.07 0.57 8.03 -51.93 -0.42 0.15 16 25 H 0.08 0.93 4.83 -51.93 -0.25 0.68 16 26 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.08 1.55 7.51 -51.93 -0.39 1.16 16 28 H 0.10 1.80 8.00 -51.93 -0.42 1.39 16 29 H 0.00 0.00 5.69 -51.93 -0.30 -0.30 16 30 H 0.03 0.76 7.61 -51.93 -0.40 0.36 16 31 H 0.06 1.63 6.58 -51.93 -0.34 1.29 16 32 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.09 1.37 5.84 -51.93 -0.30 1.07 16 34 H 0.07 1.04 6.33 -51.93 -0.33 0.71 16 LS Contribution 272.77 15.07 4.11 4.11 Total: -1.00 -31.18 272.77 -6.56 -37.74 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -4.73 Total: -2.27 kcal Atomic # 6 Polarization: 18.46 SS G_CDS: 0.31 Total: 18.76 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -1.31 Total: -61.42 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.09 Total: -13.06 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.18 -6.56 -37.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259949499.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.235 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds