Wall clock time and date at job start Mon Mar 30 2020 03:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00358 * 2 1 4 4 C 1.34776 * 120.00041 * 180.02562 * 2 1 3 5 5 O 1.21586 * 119.99797 * 2.35280 * 4 2 1 6 6 N 1.34771 * 120.00296 * 182.35280 * 4 2 1 7 7 C 1.47584 * 134.49743 * 175.85615 * 6 4 2 8 8 C 1.53936 * 86.11956 * 155.35635 * 7 6 4 9 9 N 1.46502 * 113.74264 * 137.95243 * 8 7 6 10 10 C 1.46505 * 119.99974 * 302.30159 * 9 8 7 11 11 C 1.36936 * 120.00122 * 122.29692 * 9 8 7 12 12 H 1.07995 * 120.00349 * 9.01701 * 11 9 8 13 13 C 1.38815 * 120.00151 * 189.02174 * 11 9 8 14 14 N 1.31620 * 119.99912 * 9.54973 * 13 11 9 15 15 Si 1.86796 * 120.00285 * 189.55176 * 13 11 9 16 16 H 1.48503 * 109.47166 * 59.99507 * 15 13 11 17 17 H 1.48501 * 109.47436 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47209 * 300.00012 * 15 13 11 19 19 C 1.47819 * 134.45764 * 355.72229 * 6 4 2 20 20 H 1.09006 * 109.47053 * 269.99941 * 1 2 3 21 21 H 1.09004 * 109.47310 * 29.99426 * 1 2 3 22 22 H 1.08999 * 109.47283 * 149.99767 * 1 2 3 23 23 H 1.08995 * 109.47367 * 264.16452 * 3 2 1 24 24 H 1.09003 * 109.47052 * 24.16673 * 3 2 1 25 25 H 1.08998 * 109.47036 * 144.16044 * 3 2 1 26 26 H 1.09003 * 113.76593 * 41.05553 * 7 6 4 27 27 H 1.08997 * 113.76751 * 269.66450 * 7 6 4 28 28 H 1.09004 * 113.74871 * 269.15421 * 8 7 6 29 29 H 1.09000 * 109.46781 * 354.83097 * 10 9 8 30 30 H 1.08997 * 109.46975 * 234.83013 * 10 9 8 31 31 H 1.09002 * 109.47331 * 114.82892 * 10 9 8 32 32 H 0.97003 * 120.00257 * 180.02562 * 14 13 11 33 33 H 1.08997 * 113.76588 * 90.37403 * 19 6 4 34 34 H 1.09002 * 113.83521 * 318.92248 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5317 -2.2197 -0.0442 6 7 3.4857 -1.1678 0.0474 7 6 4.5171 -2.2195 0.1381 8 6 5.4643 -1.2015 -0.5222 9 7 6.8049 -1.1741 0.0680 10 6 6.9708 -0.8944 1.4965 11 6 7.9029 -1.4100 -0.7155 12 1 7.7974 -1.4716 -1.7886 13 6 9.1515 -1.5701 -0.1306 14 7 9.2562 -1.6834 1.1765 15 14 10.6832 -1.6247 -1.1985 16 1 10.8029 -0.3541 -1.9577 17 1 11.8805 -1.8014 -0.3381 18 1 10.5838 -2.7615 -2.1488 19 6 4.5228 -0.1146 0.0276 20 1 -0.3633 0.0000 1.0277 21 1 -0.3634 0.8901 -0.5138 22 1 -0.3634 -0.8899 -0.5139 23 1 2.4697 1.5311 -1.0223 24 1 1.5673 2.0522 0.4207 25 1 3.1007 1.1667 0.6017 26 1 4.3099 -3.0925 -0.4808 27 1 4.7928 -2.4773 1.1607 28 1 5.4803 -1.2586 -1.6106 29 1 6.0037 -0.6438 1.9323 30 1 7.6556 -0.0562 1.6254 31 1 7.3765 -1.7750 1.9945 32 1 10.1288 -1.7950 1.5854 33 1 4.8002 0.2473 1.0176 34 1 4.3202 0.6899 -0.6793 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259949499.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:13 Heat of formation + Delta-G solvation = 40.467151 kcal Electronic energy + Delta-G solvation = -16277.910087 eV Core-core repulsion = 13634.555324 eV Total energy + Delta-G solvation = -2643.354763 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.60635 -39.40213 -36.53649 -36.36378 -32.89197 -30.13233 -29.00403 -28.11542 -26.81622 -26.45734 -24.52872 -21.08352 -20.26389 -19.02088 -18.20845 -17.56982 -17.49970 -16.66028 -15.94723 -15.41697 -14.97513 -14.89889 -14.38441 -14.02404 -13.93416 -13.69565 -13.34424 -13.27117 -12.85675 -12.83420 -12.63598 -12.60234 -12.29043 -12.02389 -11.80093 -11.73550 -11.14066 -10.61325 -10.02041 -9.29520 -8.92115 -7.70558 -5.20978 1.46484 1.53617 1.54637 1.61061 2.06341 2.54045 2.69197 3.32722 3.71513 3.87344 4.04642 4.21609 4.30240 4.33671 4.48268 4.49198 4.53301 4.72606 4.73863 4.77039 4.89223 4.90658 4.92028 5.25388 5.47766 5.58257 5.68145 5.89404 6.03766 6.33283 6.98810 7.18392 7.45684 7.88341 8.26620 9.24356 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.059392 B = 0.005891 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.328141 B = 4751.544771 C = 4813.063035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.637 5.637 3 C 0.067 3.933 4 C 0.717 3.283 5 O -0.644 6.644 6 N -0.657 5.657 7 C 0.099 3.901 8 C 0.153 3.847 9 N -0.601 5.601 10 C 0.174 3.826 11 C -0.261 4.261 12 H 0.083 0.917 13 C -0.056 4.056 14 N -0.942 5.942 15 Si 0.972 3.028 16 H -0.277 1.277 17 H -0.298 1.298 18 H -0.279 1.279 19 C 0.093 3.907 20 H 0.056 0.944 21 H 0.103 0.897 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.100 0.900 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.031 0.969 30 H 0.007 0.993 31 H 0.029 0.971 32 H 0.245 0.755 33 H 0.089 0.911 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.349 8.656 -2.237 15.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.374 5.374 3 C -0.075 4.075 4 C 0.421 3.579 5 O -0.527 6.527 6 N -0.395 5.395 7 C -0.027 4.027 8 C 0.042 3.958 9 N -0.321 5.321 10 C 0.030 3.970 11 C -0.391 4.391 12 H 0.101 0.899 13 C -0.250 4.250 14 N -0.591 5.591 15 Si 0.801 3.199 16 H -0.203 1.203 17 H -0.225 1.225 18 H -0.205 1.205 19 C -0.031 4.031 20 H 0.075 0.925 21 H 0.121 0.879 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.119 0.881 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.118 0.882 29 H 0.050 0.950 30 H 0.026 0.974 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.106 0.894 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.726 8.117 -2.170 15.250 hybrid contribution 0.965 -0.408 -0.102 1.052 sum -11.762 7.709 -2.272 14.245 Atomic orbital electron populations 1.21650 0.76671 1.03555 1.02132 1.47010 1.07710 1.04827 1.77872 1.22359 0.98094 0.84392 1.02607 1.15677 0.80244 0.84239 0.77741 1.90833 1.67902 1.32474 1.61455 1.48955 1.01821 1.12418 1.76308 1.23922 0.84157 0.93799 1.00813 1.22363 0.82589 0.93381 0.97452 1.44179 1.00896 1.80776 1.06275 1.20807 0.94656 0.98768 0.82781 1.19686 0.86674 1.41894 0.90832 0.89899 1.25627 1.00740 1.01614 0.96969 1.70337 1.22640 1.56442 1.09647 0.85261 0.78925 0.78147 0.77591 1.20298 1.22468 1.20505 1.24135 0.83380 0.93418 1.02129 0.92517 0.87901 0.92653 0.91693 0.88140 0.90926 0.91748 0.91320 0.88169 0.95045 0.97415 0.95232 0.94510 0.89351 0.87561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.05 10.43 127.77 1.33 3.38 16 2 N -0.64 -16.43 3.27 -890.19 -2.91 -19.34 16 3 C 0.07 1.19 9.08 127.77 1.16 2.35 16 4 C 0.72 25.42 8.51 179.06 1.52 26.95 16 5 O -0.64 -28.12 16.64 -3.99 -0.07 -28.18 16 6 N -0.66 -22.26 3.59 -854.62 -3.07 -25.33 16 7 C 0.10 3.72 8.36 86.48 0.72 4.45 16 8 C 0.15 5.66 4.54 46.74 0.21 5.87 16 9 N -0.60 -27.84 3.15 -708.51 -2.23 -30.07 16 10 C 0.17 8.10 8.01 127.77 1.02 9.13 16 11 C -0.26 -13.47 9.82 84.03 0.83 -12.65 16 12 H 0.08 4.06 7.78 -2.91 -0.02 4.04 16 13 C -0.06 -2.99 5.36 84.86 0.45 -2.53 16 14 N -0.94 -53.59 9.77 21.65 0.21 -53.38 16 15 Si 0.97 43.54 29.56 68.60 2.03 45.57 16 16 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 17 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 19 C 0.09 2.73 5.38 86.44 0.47 3.19 16 20 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 21 H 0.10 1.28 8.07 -2.39 -0.02 1.26 16 22 H 0.05 1.35 7.39 -2.39 -0.02 1.33 16 23 H 0.06 1.03 7.70 -2.39 -0.02 1.01 16 24 H 0.10 1.16 8.03 -2.39 -0.02 1.14 16 25 H 0.07 1.41 4.83 -2.39 -0.01 1.40 16 26 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.07 2.71 7.51 -2.39 -0.02 2.69 16 28 H 0.10 3.62 8.00 -2.38 -0.02 3.60 16 29 H 0.03 1.23 5.69 -2.39 -0.01 1.21 16 30 H 0.01 0.37 7.61 -2.39 -0.02 0.35 16 31 H 0.03 1.57 6.58 -2.39 -0.02 1.55 16 32 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 33 H 0.09 2.59 5.84 -2.39 -0.01 2.58 16 34 H 0.11 2.51 6.33 -2.39 -0.02 2.50 16 Total: -1.00 -67.92 272.77 2.77 -65.15 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: 1.09 Total: 5.46 kcal Atomic # 6 Polarization: 32.41 SS G_CDS: 7.72 Total: 40.14 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -8.00 Total: -128.13 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.07 Total: -28.18 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -67.92 2.77 -65.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259949499.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.619 kcal (2) G-P(sol) polarization free energy of solvation -67.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds