Wall clock time and date at job start Mon Mar 30 2020 02:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00194 * 2 1 4 4 H 1.48497 * 109.46982 * 239.99975 * 3 2 1 5 5 H 1.48496 * 109.47353 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46897 * 120.00452 * 3 2 1 7 7 C 1.38815 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99857 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99999 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00160 * 180.02562 * 9 7 2 11 11 H 1.09007 * 109.48840 * 325.04432 * 10 9 7 12 12 C 1.52571 * 109.49509 * 204.99980 * 10 9 7 13 13 C 1.47082 * 114.32893 * 155.02089 * 12 10 9 14 14 C 1.54865 * 110.32371 * 62.80148 * 13 12 10 15 15 N 1.44572 * 109.59905 * 288.73173 * 14 13 12 16 16 C 1.34784 * 118.64569 * 270.70504 * 15 14 13 17 17 N 1.34771 * 119.99547 * 359.97438 * 16 15 14 18 18 O 1.21583 * 119.99855 * 179.72835 * 16 15 14 19 19 C 1.47606 * 122.71345 * 90.98819 * 15 14 13 20 20 C 1.50888 * 109.49237 * 85.11101 * 10 9 7 21 21 H 0.97008 * 119.99638 * 359.97438 * 1 2 3 22 22 H 0.97006 * 119.99745 * 359.97438 * 9 7 2 23 23 H 1.09001 * 108.50844 * 33.76075 * 12 10 9 24 24 H 1.09001 * 108.50707 * 276.27599 * 12 10 9 25 25 H 1.09004 * 109.32919 * 302.53823 * 13 12 10 26 26 H 1.09005 * 109.18862 * 182.97712 * 13 12 10 27 27 H 1.09003 * 109.44489 * 168.69365 * 14 13 12 28 28 H 1.08993 * 109.42605 * 48.76092 * 14 13 12 29 29 H 0.96999 * 120.00409 * 0.02562 * 17 16 15 30 30 H 0.97000 * 119.99371 * 179.97438 * 17 16 15 31 31 H 1.09000 * 108.94566 * 78.28999 * 19 15 14 32 32 H 1.09000 * 108.94930 * 196.92278 * 19 15 14 33 33 H 1.08994 * 109.36269 * 332.04738 * 20 10 9 34 34 H 1.08998 * 109.36277 * 91.78712 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6568 -0.0005 11 1 2.9690 -3.5507 -0.5893 12 6 1.1834 -4.7494 -0.6084 13 6 1.9340 -5.8719 -1.1914 14 6 2.7506 -6.6000 -0.0952 15 7 3.8529 -5.7639 0.3241 16 6 5.0265 -5.8656 -0.3308 17 7 5.1544 -6.7340 -1.3535 18 8 5.9684 -5.1706 -0.0019 19 6 3.7481 -4.8079 1.4438 20 6 2.4145 -4.0323 1.4167 21 1 -0.4850 0.8401 0.0004 22 1 0.3553 -2.3880 0.0002 23 1 0.5653 -4.3042 -1.3880 24 1 0.5262 -5.1391 0.1690 25 1 2.6130 -5.4937 -1.9557 26 1 1.2342 -6.5734 -1.6457 27 1 3.1374 -7.5379 -0.4937 28 1 2.1064 -6.8070 0.7593 29 1 4.4018 -7.2856 -1.6184 30 1 5.9990 -6.8069 -1.8250 31 1 3.8247 -5.3541 2.3839 32 1 4.5723 -4.0973 1.3809 33 1 2.5101 -3.1276 2.0170 34 1 1.6273 -4.6608 1.8331 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259966901.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:17 Heat of formation + Delta-G solvation = -17.277850 kcal Electronic energy + Delta-G solvation = -16536.824122 eV Core-core repulsion = 13890.965348 eV Total energy + Delta-G solvation = -2645.858774 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.29161 -37.56682 -34.85928 -33.54748 -32.77196 -31.65828 -29.31227 -26.31596 -24.82189 -22.89759 -21.90320 -19.97854 -19.07256 -18.14979 -17.04187 -16.90821 -15.56802 -15.14545 -14.67075 -14.30650 -13.90664 -13.74932 -13.28261 -13.05955 -12.69934 -12.19706 -12.13539 -11.31002 -11.24948 -10.83648 -10.60654 -10.57242 -10.27727 -10.18851 -9.96766 -9.75194 -9.59054 -9.57448 -8.89426 -8.37037 -6.91569 -5.72664 -3.00970 2.98932 3.38554 3.48456 3.52230 3.54196 4.24486 4.62956 4.88235 5.05591 5.09913 5.43130 5.52485 5.54602 5.66237 5.73867 5.90628 6.01563 6.06648 6.25002 6.42677 6.43968 6.54421 6.63812 6.71694 6.94440 6.98731 7.06584 7.17774 7.76946 8.00945 8.46921 8.76956 9.57681 10.15839 10.50567 11.50082 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.033925 B = 0.007513 C = 0.006780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.155580 B = 3725.759156 C = 4128.869561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.184 3.816 11 H 0.047 0.953 12 C -0.128 4.128 13 C -0.132 4.132 14 C 0.112 3.888 15 N -0.614 5.614 16 C 0.702 3.298 17 N -0.871 5.871 18 O -0.597 6.597 19 C 0.130 3.870 20 C -0.149 4.149 21 H 0.255 0.745 22 H 0.382 0.618 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.395 0.605 30 H 0.409 0.591 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.024 -16.617 -1.311 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.367 5.367 10 C 0.074 3.926 11 H 0.065 0.935 12 C -0.166 4.166 13 C -0.171 4.171 14 C -0.013 4.013 15 N -0.351 5.351 16 C 0.402 3.598 17 N -0.441 5.441 18 O -0.475 6.475 19 C 0.008 3.992 20 C -0.190 4.190 21 H 0.064 0.936 22 H 0.216 0.784 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.225 0.775 30 H 0.241 0.759 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.620 -15.917 -0.941 16.600 hybrid contribution -0.030 0.595 -0.350 0.691 sum 4.591 -15.322 -1.291 16.047 Atomic orbital electron populations 1.69656 1.05087 1.25669 1.58010 1.24720 0.95489 0.97621 1.03167 0.86288 0.78521 0.83603 0.77949 1.21306 1.21741 1.21236 1.19220 0.91019 0.84124 1.42323 0.91249 1.42507 1.05671 0.99763 1.88755 1.19604 0.94450 0.85955 0.92598 0.93450 1.20749 0.99054 0.96021 1.00773 1.21267 0.99459 0.98265 0.98118 1.21538 0.89021 0.92211 0.98509 1.46927 1.10093 1.42500 1.35618 1.16011 0.83516 0.80460 0.79825 1.43176 1.18398 1.45215 1.37281 1.90940 1.39316 1.47601 1.69651 1.21875 1.00336 0.91004 0.86008 1.22681 0.94655 0.99858 1.01772 0.93556 0.78438 0.91749 0.92821 0.91794 0.91258 0.91471 0.90130 0.77504 0.75944 0.92916 0.89358 0.89582 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.53 13.06 55.49 0.72 -27.81 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.98 29.55 -169.99 -5.02 17.96 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.24 -6.68 9.80 -15.06 -0.15 -6.83 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -18.33 4.97 -54.68 -0.27 -18.60 16 10 C 0.18 3.66 2.38 -69.21 -0.16 3.50 16 11 H 0.05 1.05 7.43 -51.92 -0.39 0.67 16 12 C -0.13 -2.02 4.69 -29.79 -0.14 -2.16 16 13 C -0.13 -1.57 5.74 -28.59 -0.16 -1.73 16 14 C 0.11 1.18 5.14 -4.09 -0.02 1.16 16 15 N -0.61 -8.67 2.23 -178.05 -0.40 -9.07 16 16 C 0.70 10.81 8.49 -86.92 -0.74 10.07 16 17 N -0.87 -9.01 8.71 27.63 0.24 -8.77 16 18 O -0.60 -11.94 16.45 5.29 0.09 -11.85 16 19 C 0.13 2.07 6.14 -2.76 -0.02 2.05 16 20 C -0.15 -2.62 5.39 -27.11 -0.15 -2.77 16 21 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 22 H 0.38 10.19 7.80 -40.82 -0.32 9.87 16 23 H 0.06 1.12 8.04 -51.93 -0.42 0.71 16 24 H 0.05 0.79 7.36 -51.93 -0.38 0.41 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.51 6.23 -51.93 -0.32 0.19 16 28 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 29 H 0.40 2.95 6.45 -40.82 -0.26 2.69 16 30 H 0.41 3.67 8.93 -40.82 -0.36 3.31 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.63 6.95 -51.93 -0.36 1.27 16 33 H 0.09 1.74 7.86 -51.93 -0.41 1.33 16 34 H 0.05 0.82 7.32 -51.93 -0.38 0.44 16 LS Contribution 272.54 15.07 4.11 4.11 Total: -1.00 -33.84 272.54 -7.00 -40.84 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -4.84 Total: 10.40 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -1.63 Total: 2.79 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: 0.30 Total: -64.24 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -33.84 -7.00 -40.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966901.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.561 kcal (2) G-P(sol) polarization free energy of solvation -33.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds