Wall clock time and date at job start Mon Mar 30 2020 02:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00194 * 2 1 4 4 H 1.48497 * 109.46982 * 239.99975 * 3 2 1 5 5 H 1.48496 * 109.47353 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46897 * 120.00452 * 3 2 1 7 7 C 1.38815 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99857 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99999 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00160 * 180.02562 * 9 7 2 11 11 H 1.09007 * 109.48840 * 325.04432 * 10 9 7 12 12 C 1.52571 * 109.49509 * 204.99980 * 10 9 7 13 13 C 1.47082 * 114.32893 * 155.02089 * 12 10 9 14 14 C 1.54865 * 110.32371 * 62.80148 * 13 12 10 15 15 N 1.44572 * 109.59905 * 288.73173 * 14 13 12 16 16 C 1.34784 * 118.64569 * 270.70504 * 15 14 13 17 17 N 1.34771 * 119.99547 * 359.97438 * 16 15 14 18 18 O 1.21583 * 119.99855 * 179.72835 * 16 15 14 19 19 C 1.47606 * 122.71345 * 90.98819 * 15 14 13 20 20 C 1.50888 * 109.49237 * 85.11101 * 10 9 7 21 21 H 0.97008 * 119.99638 * 359.97438 * 1 2 3 22 22 H 0.97006 * 119.99745 * 359.97438 * 9 7 2 23 23 H 1.09001 * 108.50844 * 33.76075 * 12 10 9 24 24 H 1.09001 * 108.50707 * 276.27599 * 12 10 9 25 25 H 1.09004 * 109.32919 * 302.53823 * 13 12 10 26 26 H 1.09005 * 109.18862 * 182.97712 * 13 12 10 27 27 H 1.09003 * 109.44489 * 168.69365 * 14 13 12 28 28 H 1.08993 * 109.42605 * 48.76092 * 14 13 12 29 29 H 0.96999 * 120.00409 * 0.02562 * 17 16 15 30 30 H 0.97000 * 119.99371 * 179.97438 * 17 16 15 31 31 H 1.09000 * 108.94566 * 78.28999 * 19 15 14 32 32 H 1.09000 * 108.94930 * 196.92278 * 19 15 14 33 33 H 1.08994 * 109.36269 * 332.04738 * 20 10 9 34 34 H 1.08998 * 109.36277 * 91.78712 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6568 -0.0005 11 1 2.9690 -3.5507 -0.5893 12 6 1.1834 -4.7494 -0.6084 13 6 1.9340 -5.8719 -1.1914 14 6 2.7506 -6.6000 -0.0952 15 7 3.8529 -5.7639 0.3241 16 6 5.0265 -5.8656 -0.3308 17 7 5.1544 -6.7340 -1.3535 18 8 5.9684 -5.1706 -0.0019 19 6 3.7481 -4.8079 1.4438 20 6 2.4145 -4.0323 1.4167 21 1 -0.4850 0.8401 0.0004 22 1 0.3553 -2.3880 0.0002 23 1 0.5653 -4.3042 -1.3880 24 1 0.5262 -5.1391 0.1690 25 1 2.6130 -5.4937 -1.9557 26 1 1.2342 -6.5734 -1.6457 27 1 3.1374 -7.5379 -0.4937 28 1 2.1064 -6.8070 0.7593 29 1 4.4018 -7.2856 -1.6184 30 1 5.9990 -6.8069 -1.8250 31 1 3.8247 -5.3541 2.3839 32 1 4.5723 -4.0973 1.3809 33 1 2.5101 -3.1276 2.0170 34 1 1.6273 -4.6608 1.8331 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259966901.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:16 Heat of formation + Delta-G solvation = -43.311658 kcal Electronic energy + Delta-G solvation = -16537.953032 eV Core-core repulsion = 13890.965348 eV Total energy + Delta-G solvation = -2646.987685 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.46191 -38.94877 -36.42828 -34.83808 -34.20787 -33.18011 -31.09975 -27.63983 -26.33716 -24.69508 -23.11633 -21.37825 -20.30813 -19.29916 -19.00729 -18.04352 -17.04523 -16.32662 -16.25063 -15.71520 -15.44564 -15.34805 -14.75082 -14.43492 -14.04031 -13.58127 -13.42308 -13.10681 -12.82162 -12.55115 -12.27692 -12.17891 -11.95364 -11.67756 -11.47334 -11.36964 -11.16738 -10.94473 -10.64139 -9.52983 -8.98912 -7.96596 -5.23943 1.43625 1.45911 1.52442 1.89225 2.22131 2.53891 3.32756 3.37579 3.76762 3.94396 4.00043 4.13802 4.31580 4.41505 4.60361 4.63131 4.68968 4.84320 4.94916 5.07358 5.13664 5.22329 5.34071 5.48606 5.53948 5.60892 5.70285 5.93759 6.07205 6.27810 7.02206 7.32879 7.68233 8.10895 8.34005 9.26494 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.033925 B = 0.007513 C = 0.006780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.155580 B = 3725.759156 C = 4128.869561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.966 3.034 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.238 4.238 8 H 0.062 0.938 9 N -0.738 5.738 10 C 0.180 3.820 11 H 0.018 0.982 12 C -0.119 4.119 13 C -0.127 4.127 14 C 0.107 3.893 15 N -0.614 5.614 16 C 0.693 3.307 17 N -0.846 5.846 18 O -0.652 6.652 19 C 0.139 3.861 20 C -0.136 4.136 21 H 0.252 0.748 22 H 0.373 0.627 23 H 0.043 0.957 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.413 0.587 30 H 0.418 0.582 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.958 -18.972 -1.562 19.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.264 4.264 3 Si 0.795 3.205 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.370 4.370 8 H 0.080 0.920 9 N -0.378 5.378 10 C 0.072 3.928 11 H 0.036 0.964 12 C -0.157 4.157 13 C -0.166 4.166 14 C -0.015 4.015 15 N -0.350 5.350 16 C 0.393 3.607 17 N -0.417 5.417 18 O -0.534 6.534 19 C 0.015 3.985 20 C -0.177 4.177 21 H 0.061 0.939 22 H 0.205 0.795 23 H 0.062 0.938 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.116 0.884 29 H 0.246 0.754 30 H 0.251 0.749 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.554 -18.356 -1.226 18.952 hybrid contribution -0.006 1.253 -0.302 1.289 sum 4.548 -17.103 -1.528 17.764 Atomic orbital electron populations 1.69789 1.06302 1.26062 1.59609 1.25448 0.96363 1.00680 1.03906 0.85328 0.77357 0.79804 0.78026 1.20894 1.21569 1.20642 1.19456 0.90901 0.85664 1.41005 0.91988 1.42683 1.05354 1.00882 1.88862 1.19830 0.93637 0.85416 0.93922 0.96352 1.20670 0.98644 0.95819 1.00563 1.21254 0.99754 0.97522 0.98078 1.21847 0.88122 0.92700 0.98874 1.46929 1.10848 1.42252 1.35000 1.16298 0.83172 0.80694 0.80576 1.42910 1.19539 1.43806 1.35442 1.90905 1.41261 1.49920 1.71344 1.21630 0.97645 0.91130 0.88112 1.22427 0.96589 0.99259 0.99424 0.93946 0.79486 0.93805 0.91092 0.93184 0.87348 0.87371 0.88404 0.75408 0.74947 0.90219 0.92806 0.92876 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.05 13.06 21.65 0.28 -59.76 16 2 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 3 Si 0.97 48.03 29.55 68.60 2.03 50.05 16 4 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.24 -13.86 9.80 84.03 0.82 -13.03 16 8 H 0.06 3.62 7.83 -2.91 -0.02 3.60 16 9 N -0.74 -38.11 4.97 -326.90 -1.62 -39.73 16 10 C 0.18 7.20 2.38 44.16 0.11 7.30 16 11 H 0.02 0.84 7.43 -2.38 -0.02 0.82 16 12 C -0.12 -3.55 4.69 28.61 0.13 -3.41 16 13 C -0.13 -2.57 5.74 29.39 0.17 -2.40 16 14 C 0.11 1.81 5.14 87.38 0.45 2.26 16 15 N -0.61 -16.03 2.23 -835.50 -1.86 -17.89 16 16 C 0.69 20.37 8.49 179.05 1.52 21.89 16 17 N -0.85 -15.19 8.71 -184.75 -1.61 -16.79 16 18 O -0.65 -26.31 16.45 -3.98 -0.07 -26.38 16 19 C 0.14 4.30 6.14 86.61 0.53 4.83 16 20 C -0.14 -4.75 5.39 30.35 0.16 -4.59 16 21 H 0.25 15.15 8.31 -92.70 -0.77 14.38 16 22 H 0.37 20.35 7.80 -92.70 -0.72 19.63 16 23 H 0.04 1.49 8.04 -2.39 -0.02 1.47 16 24 H 0.07 1.88 7.36 -2.39 -0.02 1.86 16 25 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.11 1.00 6.23 -2.39 -0.01 0.99 16 28 H 0.10 1.42 8.06 -2.39 -0.02 1.40 16 29 H 0.41 4.43 6.45 -92.71 -0.60 3.84 16 30 H 0.42 6.51 8.93 -92.71 -0.83 5.69 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.05 2.05 6.95 -2.39 -0.02 2.04 16 33 H 0.05 2.20 7.86 -2.39 -0.02 2.18 16 34 H 0.08 2.29 7.32 -2.39 -0.02 2.27 16 Total: -1.00 -76.54 272.54 0.49 -76.05 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -1.02 Total: 25.38 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 4.36 Total: 9.08 kcal Atomic # 7 Polarization: -129.37 SS G_CDS: -4.81 Total: -134.18 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.07 Total: -26.38 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.05 kcal Total: -76.54 0.49 -76.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966901.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.735 kcal (2) G-P(sol) polarization free energy of solvation -76.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds