Wall clock time and date at job start Mon Mar 30 2020 02:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00144 * 2 1 4 4 H 1.48497 * 109.46791 * 239.99952 * 3 2 1 5 5 H 1.48497 * 109.46780 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47116 * 119.99967 * 3 2 1 7 7 C 1.37877 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99945 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00254 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47185 * 179.97438 * 9 7 2 11 11 C 1.46897 * 110.99923 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.52575 * 35.08521 * 11 10 9 13 13 C 1.53073 * 109.62394 * 155.10717 * 11 10 9 14 14 C 1.53041 * 109.66034 * 181.16825 * 13 11 10 15 15 C 1.53189 * 109.31241 * 298.70056 * 14 13 11 16 16 N 1.46924 * 108.77866 * 54.63502 * 15 14 13 17 17 C 1.34781 * 120.63443 * 126.40700 * 16 15 14 18 18 N 1.34777 * 119.99719 * 354.94738 * 17 16 15 19 19 O 1.21580 * 119.99849 * 174.94389 * 17 16 15 20 20 C 1.46928 * 118.73931 * 306.39109 * 16 15 14 21 21 H 0.97003 * 119.99781 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46543 * 59.99666 * 9 7 2 23 23 H 1.09002 * 109.46792 * 300.00126 * 9 7 2 24 24 H 1.00902 * 111.00271 * 303.95428 * 10 9 7 25 25 H 1.09007 * 109.34771 * 61.14379 * 13 11 10 26 26 H 1.08994 * 109.45430 * 301.25910 * 13 11 10 27 27 H 1.09005 * 109.49728 * 178.74900 * 14 13 11 28 28 H 1.09003 * 109.52472 * 58.66632 * 14 13 11 29 29 H 1.08998 * 109.58920 * 294.84666 * 15 14 13 30 30 H 1.09007 * 109.58655 * 174.42311 * 15 14 13 31 31 H 0.96995 * 119.99714 * 5.05941 * 18 17 16 32 32 H 0.96995 * 119.99826 * 185.06494 * 18 17 16 33 33 H 1.08993 * 109.59102 * 173.39098 * 20 16 15 34 34 H 1.09003 * 109.58642 * 293.68123 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5052 -4.9070 -0.0001 12 1 0.5927 -4.8263 -0.5909 13 6 2.4100 -5.9823 -0.6070 14 6 1.6705 -7.3219 -0.6347 15 6 1.3202 -7.7370 0.7977 16 7 0.5701 -6.6468 1.4360 17 6 -0.6273 -6.8805 2.0088 18 7 -1.1945 -8.0993 1.9115 19 8 -1.1957 -5.9920 2.6135 20 6 1.1502 -5.2969 1.4384 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8404 -3.5487 -0.7808 25 1 3.3123 -6.0781 -0.0029 26 1 2.6821 -5.6966 -1.6230 27 1 2.3089 -8.0806 -1.0876 28 1 0.7554 -7.2208 -1.2183 29 1 2.2360 -7.9270 1.3574 30 1 0.7081 -8.6388 0.7775 31 1 -0.7095 -8.8278 1.4933 32 1 -2.0876 -8.2478 2.2594 33 1 0.4261 -4.5886 1.8408 34 1 2.0509 -5.2873 2.0523 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260010984.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:46 Heat of formation + Delta-G solvation = -31.342435 kcal Electronic energy + Delta-G solvation = -16062.588462 eV Core-core repulsion = 13416.119802 eV Total energy + Delta-G solvation = -2646.468660 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.16621 -37.59826 -34.96394 -33.52933 -32.47768 -31.87649 -29.23259 -25.94457 -25.28847 -22.81102 -21.22180 -20.78853 -19.31339 -18.31475 -16.81388 -16.37809 -15.19686 -15.06476 -14.68970 -14.66121 -14.27632 -13.71597 -13.55884 -12.99348 -12.56279 -12.48305 -12.17328 -11.53938 -11.25282 -11.07535 -10.88363 -10.67083 -10.60167 -10.16714 -10.02701 -9.72664 -9.62983 -9.14373 -8.50234 -8.38880 -7.32740 -5.97741 -4.00515 2.90844 3.34894 3.36986 3.41029 3.43894 4.12133 4.46448 4.71220 4.87968 4.95687 5.19153 5.37404 5.39258 5.43564 5.64453 5.77409 5.88468 5.94058 6.12185 6.20483 6.41652 6.55245 6.61700 6.88881 7.01418 7.31037 7.45164 7.81341 7.96773 8.17098 8.40546 8.62019 8.74606 9.08190 9.64108 11.13210 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.037979 B = 0.006116 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.082044 B = 4576.687607 C = 5119.656410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.683 5.683 11 C 0.074 3.926 12 H 0.038 0.962 13 C -0.120 4.120 14 C -0.132 4.132 15 C 0.113 3.887 16 N -0.626 5.626 17 C 0.706 3.294 18 N -0.873 5.873 19 O -0.587 6.587 20 C 0.140 3.860 21 H 0.262 0.738 22 H -0.014 1.014 23 H 0.031 0.969 24 H 0.332 0.668 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.393 0.607 32 H 0.411 0.589 33 H 0.095 0.905 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.532 -18.855 -0.884 19.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.555 4.555 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.314 5.314 11 C -0.038 4.038 12 H 0.056 0.944 13 C -0.158 4.158 14 C -0.171 4.171 15 C -0.011 4.011 16 N -0.365 5.365 17 C 0.405 3.595 18 N -0.444 5.444 19 O -0.464 6.464 20 C 0.017 3.983 21 H 0.072 0.928 22 H 0.004 0.996 23 H 0.049 0.951 24 H 0.150 0.850 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.223 0.777 32 H 0.242 0.758 33 H 0.113 0.887 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.212 -17.988 0.176 18.124 hybrid contribution -0.097 0.401 -1.074 1.150 sum 2.115 -17.587 -0.898 17.736 Atomic orbital electron populations 1.69968 1.06087 1.26898 1.50571 1.25001 0.94861 0.99364 0.95350 0.86536 0.79392 0.82716 0.78584 1.20330 1.21368 1.20137 1.21131 0.93431 0.90233 1.50698 0.91990 1.19625 0.90491 0.87218 0.95946 1.60565 1.21162 1.00656 1.49061 1.21746 0.95963 0.90940 0.95126 0.94409 1.21720 0.98912 0.94073 1.01144 1.21907 1.01073 0.98010 0.96133 1.21616 0.96441 0.89182 0.93875 1.47330 1.19083 1.10612 1.59437 1.15897 0.80941 0.82988 0.79650 1.43169 1.21737 1.11271 1.68187 1.90993 1.64016 1.44436 1.46996 1.21531 0.98898 0.80783 0.97061 0.92836 0.99628 0.95124 0.85024 0.91065 0.91831 0.90798 0.91600 0.91218 0.90966 0.77715 0.75777 0.88674 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.89 9.32 -34.44 -0.32 -15.21 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.19 5.21 5.24 -4.98 -0.03 5.18 16 10 N -0.68 -14.56 6.30 -107.84 -0.68 -15.24 16 11 C 0.07 1.31 2.65 -67.57 -0.18 1.14 16 12 H 0.04 0.76 7.80 -51.93 -0.41 0.35 16 13 C -0.12 -1.57 5.17 -26.67 -0.14 -1.71 16 14 C -0.13 -1.33 6.08 -26.61 -0.16 -1.49 16 15 C 0.11 1.10 6.43 -3.71 -0.02 1.08 16 16 N -0.63 -9.14 2.97 -178.49 -0.53 -9.67 16 17 C 0.71 11.25 8.57 -86.91 -0.74 10.50 16 18 N -0.87 -8.92 8.79 27.63 0.24 -8.67 16 19 O -0.59 -12.51 16.61 5.30 0.09 -12.42 16 20 C 0.14 2.52 5.88 -3.70 -0.02 2.50 16 21 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 22 H -0.01 -0.40 8.06 -51.93 -0.42 -0.82 16 23 H 0.03 0.91 7.56 -51.93 -0.39 0.51 16 24 H 0.33 6.65 8.33 -39.29 -0.33 6.32 16 25 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 26 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.49 5.57 -51.92 -0.29 0.20 16 31 H 0.39 2.68 6.29 -40.82 -0.26 2.42 16 32 H 0.41 3.66 8.93 -40.82 -0.36 3.29 16 33 H 0.09 2.10 6.51 -51.93 -0.34 1.76 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 277.60 15.07 4.18 4.18 Total: -1.00 -34.71 277.60 -7.57 -42.27 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -4.87 Total: 5.83 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -1.71 Total: 3.54 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -0.23 Total: -60.47 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.09 Total: -12.42 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -34.71 -7.57 -42.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260010984.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.929 kcal (2) G-P(sol) polarization free energy of solvation -34.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds