Wall clock time and date at job start Mon Mar 30 2020 02:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00144 * 2 1 4 4 H 1.48497 * 109.46791 * 239.99952 * 3 2 1 5 5 H 1.48497 * 109.46780 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47116 * 119.99967 * 3 2 1 7 7 C 1.37877 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99945 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00254 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47185 * 179.97438 * 9 7 2 11 11 C 1.46897 * 110.99923 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.52575 * 35.08521 * 11 10 9 13 13 C 1.53073 * 109.62394 * 155.10717 * 11 10 9 14 14 C 1.53041 * 109.66034 * 181.16825 * 13 11 10 15 15 C 1.53189 * 109.31241 * 298.70056 * 14 13 11 16 16 N 1.46924 * 108.77866 * 54.63502 * 15 14 13 17 17 C 1.34781 * 120.63443 * 126.40700 * 16 15 14 18 18 N 1.34777 * 119.99719 * 354.94738 * 17 16 15 19 19 O 1.21580 * 119.99849 * 174.94389 * 17 16 15 20 20 C 1.46928 * 118.73931 * 306.39109 * 16 15 14 21 21 H 0.97003 * 119.99781 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46543 * 59.99666 * 9 7 2 23 23 H 1.09002 * 109.46792 * 300.00126 * 9 7 2 24 24 H 1.00902 * 111.00271 * 303.95428 * 10 9 7 25 25 H 1.09007 * 109.34771 * 61.14379 * 13 11 10 26 26 H 1.08994 * 109.45430 * 301.25910 * 13 11 10 27 27 H 1.09005 * 109.49728 * 178.74900 * 14 13 11 28 28 H 1.09003 * 109.52472 * 58.66632 * 14 13 11 29 29 H 1.08998 * 109.58920 * 294.84666 * 15 14 13 30 30 H 1.09007 * 109.58655 * 174.42311 * 15 14 13 31 31 H 0.96995 * 119.99714 * 5.05941 * 18 17 16 32 32 H 0.96995 * 119.99826 * 185.06494 * 18 17 16 33 33 H 1.08993 * 109.59102 * 173.39098 * 20 16 15 34 34 H 1.09003 * 109.58642 * 293.68123 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5052 -4.9070 -0.0001 12 1 0.5927 -4.8263 -0.5909 13 6 2.4100 -5.9823 -0.6070 14 6 1.6705 -7.3219 -0.6347 15 6 1.3202 -7.7370 0.7977 16 7 0.5701 -6.6468 1.4360 17 6 -0.6273 -6.8805 2.0088 18 7 -1.1945 -8.0993 1.9115 19 8 -1.1957 -5.9920 2.6135 20 6 1.1502 -5.2969 1.4384 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8404 -3.5487 -0.7808 25 1 3.3123 -6.0781 -0.0029 26 1 2.6821 -5.6966 -1.6230 27 1 2.3089 -8.0806 -1.0876 28 1 0.7554 -7.2208 -1.2183 29 1 2.2360 -7.9270 1.3574 30 1 0.7081 -8.6388 0.7775 31 1 -0.7095 -8.8278 1.4933 32 1 -2.0876 -8.2478 2.2594 33 1 0.4261 -4.5886 1.8408 34 1 2.0509 -5.2873 2.0523 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260010984.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:45 Heat of formation + Delta-G solvation = -60.612513 kcal Electronic energy + Delta-G solvation = -16063.857708 eV Core-core repulsion = 13416.119802 eV Total energy + Delta-G solvation = -2647.737906 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.38629 -38.95645 -36.57545 -35.01848 -34.20553 -33.10159 -30.81557 -27.92460 -26.45922 -24.42318 -22.78648 -22.18276 -20.50832 -19.40500 -18.56395 -17.91423 -16.73935 -16.57467 -16.39359 -15.85353 -15.48326 -15.23736 -15.02492 -14.33520 -14.14546 -13.92780 -13.77199 -13.33785 -12.82731 -12.74026 -12.40839 -12.18017 -11.96284 -11.86077 -11.47982 -11.32083 -11.18146 -10.75542 -10.67647 -9.66048 -9.18397 -8.23103 -6.36155 1.40424 1.45518 1.53435 1.74246 2.10687 2.39775 3.09922 3.20789 3.50587 3.82106 3.94848 4.06771 4.21704 4.29944 4.54200 4.67535 4.79420 4.86633 4.95480 5.01464 5.09269 5.18617 5.22486 5.38475 5.44766 5.62018 5.86100 5.98425 6.00098 6.40685 6.69676 6.87826 6.94473 7.35457 7.59777 8.88777 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.037979 B = 0.006116 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.082044 B = 4576.687607 C = 5119.656410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.004 4.004 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.212 3.788 10 N -0.677 5.677 11 C 0.075 3.925 12 H 0.008 0.992 13 C -0.113 4.113 14 C -0.125 4.125 15 C 0.105 3.895 16 N -0.625 5.625 17 C 0.696 3.304 18 N -0.842 5.842 19 O -0.653 6.653 20 C 0.149 3.851 21 H 0.265 0.735 22 H -0.045 1.045 23 H -0.010 1.010 24 H 0.343 0.657 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.117 0.883 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.414 0.586 32 H 0.420 0.580 33 H 0.039 0.961 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.658 -20.834 -1.707 21.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.202 4.202 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.574 4.574 8 H 0.089 0.911 9 C 0.084 3.916 10 N -0.309 5.309 11 C -0.036 4.036 12 H 0.026 0.974 13 C -0.150 4.150 14 C -0.164 4.164 15 C -0.017 4.017 16 N -0.363 5.363 17 C 0.395 3.605 18 N -0.415 5.415 19 O -0.535 6.535 20 C 0.024 3.976 21 H 0.073 0.927 22 H -0.028 1.028 23 H 0.008 0.992 24 H 0.162 0.838 25 H 0.103 0.897 26 H 0.089 0.911 27 H 0.135 0.865 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.129 0.871 31 H 0.248 0.752 32 H 0.253 0.747 33 H 0.058 0.942 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.373 -20.075 -0.685 20.557 hybrid contribution -0.785 0.916 -0.818 1.457 sum 3.588 -19.159 -1.502 19.549 Atomic orbital electron populations 1.70133 1.08163 1.28127 1.51439 1.26082 0.95772 1.03848 0.94465 0.85287 0.77970 0.77075 0.79351 1.18576 1.20999 1.19189 1.21537 0.94001 0.91149 1.50755 0.91059 1.19190 0.90544 0.89326 0.92554 1.60389 1.20188 1.00812 1.49520 1.21817 0.95831 0.90902 0.95061 0.97388 1.21694 0.98393 0.93806 1.01150 1.21918 1.01104 0.97029 0.96348 1.22060 0.97513 0.88546 0.93532 1.47307 1.19106 1.10358 1.59495 1.16225 0.81124 0.83778 0.79377 1.42829 1.21905 1.09726 1.66993 1.90952 1.65758 1.46930 1.49862 1.21151 0.97528 0.82040 0.96848 0.92658 1.02753 0.99192 0.83846 0.89705 0.91076 0.86478 0.92492 0.89135 0.87139 0.75224 0.74718 0.94196 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.94 13.29 21.45 0.28 -59.65 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 3 Si 0.98 45.62 29.54 68.60 2.03 47.65 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.54 -31.71 9.32 25.60 0.24 -31.48 16 8 H 0.07 3.99 7.81 -2.91 -0.02 3.97 16 9 C 0.21 12.09 5.24 85.56 0.45 12.54 16 10 N -0.68 -29.80 6.30 -495.10 -3.12 -32.92 16 11 C 0.08 2.75 2.65 45.01 0.12 2.87 16 12 H 0.01 0.34 7.80 -2.39 -0.02 0.32 16 13 C -0.11 -2.66 5.17 30.63 0.16 -2.51 16 14 C -0.13 -2.02 6.08 30.67 0.19 -1.83 16 15 C 0.10 1.65 6.43 86.36 0.56 2.21 16 16 N -0.63 -17.88 2.97 -836.89 -2.49 -20.37 16 17 C 0.70 22.25 8.57 179.05 1.53 23.79 16 18 N -0.84 -15.55 8.79 -184.75 -1.62 -17.17 16 19 O -0.65 -29.43 16.61 -3.97 -0.07 -29.50 16 20 C 0.15 5.60 5.88 86.37 0.51 6.10 16 21 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 22 H -0.05 -2.79 8.06 -2.38 -0.02 -2.81 16 23 H -0.01 -0.65 7.56 -2.39 -0.02 -0.67 16 24 H 0.34 13.75 8.33 -89.69 -0.75 13.00 16 25 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 26 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 27 H 0.12 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.11 0.91 5.57 -2.38 -0.01 0.90 16 31 H 0.41 4.07 6.29 -92.71 -0.58 3.49 16 32 H 0.42 6.78 8.93 -92.71 -0.83 5.96 16 33 H 0.04 1.93 6.51 -2.39 -0.02 1.91 16 34 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -82.05 277.60 -1.81 -83.86 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -1.03 Total: 16.18 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 4.21 Total: 11.92 kcal Atomic # 7 Polarization: -123.16 SS G_CDS: -6.95 Total: -130.11 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.07 Total: -29.50 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -82.05 -1.81 -83.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260010984.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.247 kcal (2) G-P(sol) polarization free energy of solvation -82.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds