Wall clock time and date at job start Mon Mar 30 2020 03:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 120.00380 * 2 1 4 4 C 1.34780 * 119.99775 * 179.97438 * 2 1 3 5 5 O 1.21588 * 119.99580 * 1.70821 * 4 2 1 6 6 N 1.34773 * 120.00042 * 181.71448 * 4 2 1 7 7 C 1.47582 * 134.49044 * 184.81650 * 6 4 2 8 8 C 1.53946 * 86.11531 * 204.63297 * 7 6 4 9 9 N 1.46903 * 113.74308 * 221.93997 * 8 7 6 10 10 C 1.46900 * 111.00134 * 203.07713 * 9 8 7 11 11 C 1.50694 * 109.47156 * 180.02562 * 10 9 8 12 12 H 1.08007 * 120.00136 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00334 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99463 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00557 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46745 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47093 * 120.00152 * 15 13 11 18 18 H 1.48494 * 109.47247 * 240.00353 * 15 13 11 19 19 C 1.47922 * 134.50428 * 4.80691 * 6 4 2 20 20 H 1.08996 * 109.47211 * 270.00121 * 1 2 3 21 21 H 1.09001 * 109.46462 * 30.00401 * 1 2 3 22 22 H 1.08999 * 109.46984 * 149.99853 * 1 2 3 23 23 H 1.09001 * 109.47069 * 263.20965 * 3 2 1 24 24 H 1.09006 * 109.47127 * 23.20727 * 3 2 1 25 25 H 1.09006 * 109.47368 * 143.20632 * 3 2 1 26 26 H 1.09001 * 113.76938 * 90.33787 * 7 6 4 27 27 H 1.08996 * 113.76840 * 318.93510 * 7 6 4 28 28 H 1.09001 * 113.74103 * 90.74091 * 8 7 6 29 29 H 1.00898 * 110.99673 * 79.11998 * 9 8 7 30 30 H 1.09000 * 109.46856 * 299.99715 * 10 9 8 31 31 H 1.08998 * 109.47150 * 59.99656 * 10 9 8 32 32 H 0.97001 * 119.99597 * 179.97438 * 14 13 11 33 33 H 1.09007 * 113.86837 * 41.10652 * 19 6 4 34 34 H 1.09001 * 113.77267 * 269.61616 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1389 -1.1673 0.0005 5 8 1.5312 -2.2200 -0.0304 6 7 3.4862 -1.1676 0.0354 7 6 4.5225 -2.2155 -0.0413 8 6 5.4261 -1.2310 0.7230 9 7 6.8047 -1.1796 0.2183 10 6 7.7263 -0.6912 1.2528 11 6 9.1273 -0.6517 0.6994 12 1 9.3147 -0.9591 -0.3189 13 6 10.1702 -0.2232 1.4930 14 7 9.9421 0.1516 2.7328 15 14 11.9072 -0.1749 0.8073 16 1 11.8961 -0.6431 -0.6020 17 1 12.4224 1.2168 0.8620 18 1 12.7836 -1.0594 1.6164 19 6 4.5202 -0.1179 0.1659 20 1 -0.3633 0.0000 1.0276 21 1 -0.3632 0.8900 -0.5139 22 1 -0.3633 -0.8900 -0.5139 23 1 2.4845 1.5225 -1.0205 24 1 1.5613 2.0556 0.4050 25 1 3.0920 1.1718 0.6155 26 1 4.8609 -2.4252 -1.0560 27 1 4.2790 -3.1163 0.5219 28 1 5.3740 -1.3382 1.8065 29 1 6.8638 -0.6138 -0.6150 30 1 7.4290 0.3114 1.5601 31 1 7.6937 -1.3596 2.1132 32 1 10.6758 0.4527 3.2912 33 1 4.2749 0.6547 0.8947 34 1 4.8579 0.2872 -0.7880 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260196006.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:16 Heat of formation + Delta-G solvation = 32.674832 kcal Electronic energy + Delta-G solvation = -15707.202327 eV Core-core repulsion = 13063.509664 eV Total energy + Delta-G solvation = -2643.692663 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.46800 -38.14949 -35.44822 -34.29355 -32.18159 -29.25200 -28.18491 -26.36957 -25.83389 -24.77483 -21.83742 -20.58824 -19.37285 -17.11094 -16.55988 -16.47782 -16.22257 -15.14657 -14.69036 -14.48868 -13.78783 -13.60145 -13.25373 -12.97002 -12.77999 -12.53989 -12.21498 -12.13122 -11.82351 -11.79527 -11.25010 -10.91355 -10.72372 -10.51994 -10.14856 -9.83084 -9.25227 -8.90915 -8.55891 -8.29358 -7.45943 -6.10232 -4.12678 2.51711 3.24439 3.27391 3.35352 3.39856 3.62928 4.37811 4.70726 4.83758 4.95432 5.13082 5.16582 5.26547 5.27764 5.36886 5.47250 5.51910 5.60754 5.68869 5.72589 5.81791 5.94817 6.35201 6.44594 7.06443 7.11272 7.29544 7.69006 8.01365 8.06996 8.24065 8.46175 8.62196 8.96386 9.52972 11.00717 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.061880 B = 0.004720 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.382451 B = 5930.862755 C = 6132.887950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.639 5.639 3 C 0.056 3.944 4 C 0.729 3.271 5 O -0.595 6.595 6 N -0.659 5.659 7 C 0.134 3.866 8 C 0.063 3.937 9 N -0.674 5.674 10 C 0.193 3.807 11 C -0.517 4.517 12 H 0.064 0.936 13 C 0.057 3.943 14 N -0.897 5.897 15 Si 0.899 3.101 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.064 3.936 20 H 0.049 0.951 21 H 0.066 0.934 22 H 0.075 0.925 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.335 0.665 30 H -0.010 1.010 31 H 0.031 0.969 32 H 0.262 0.738 33 H 0.087 0.913 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.784 3.690 -4.848 15.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.377 5.377 3 C -0.086 4.086 4 C 0.433 3.567 5 O -0.474 6.474 6 N -0.399 5.399 7 C 0.010 3.990 8 C -0.050 4.050 9 N -0.303 5.303 10 C 0.067 3.933 11 C -0.556 4.556 12 H 0.082 0.918 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.727 3.273 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.060 4.060 20 H 0.067 0.933 21 H 0.084 0.916 22 H 0.094 0.906 23 H 0.070 0.930 24 H 0.088 0.912 25 H 0.108 0.892 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.122 0.878 29 H 0.153 0.847 30 H 0.008 0.992 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.106 2.513 -4.575 15.040 hybrid contribution 0.662 1.279 -0.279 1.467 sum -13.443 3.791 -4.854 14.787 Atomic orbital electron populations 1.21476 0.78144 1.02747 1.01407 1.46837 1.06682 1.05002 1.79176 1.22433 0.98587 0.85401 1.02194 1.15376 0.80178 0.83636 0.77503 1.90888 1.66910 1.30395 1.59173 1.49061 1.01788 1.12313 1.76732 1.23250 0.82083 0.92646 1.00987 1.23536 0.88952 0.92932 0.99575 1.60532 1.02364 1.58227 1.09205 1.19638 0.90292 0.93386 0.90024 1.21209 0.91764 1.43380 0.99222 0.91805 1.24981 0.99410 0.95248 0.94835 1.69965 1.32151 1.44447 1.07052 0.86425 0.84149 0.77537 0.79202 1.19617 1.21100 1.20965 1.24525 0.86444 0.94156 1.00861 0.93258 0.91565 0.90625 0.93031 0.91183 0.89233 0.89685 0.90237 0.87816 0.84722 0.99223 0.95130 0.92887 0.89535 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.09 10.42 59.85 0.62 1.72 16 2 N -0.64 -8.26 3.27 -195.34 -0.64 -8.90 16 3 C 0.06 0.55 9.59 59.84 0.57 1.12 16 4 C 0.73 12.04 8.51 -86.92 -0.74 11.31 16 5 O -0.59 -11.90 16.64 5.29 0.09 -11.81 16 6 N -0.66 -9.96 3.60 -184.00 -0.66 -10.62 16 7 C 0.13 2.02 8.64 -2.97 -0.03 2.00 16 8 C 0.06 1.00 4.35 -69.92 -0.30 0.70 16 9 N -0.67 -12.88 6.61 -109.67 -0.73 -13.60 16 10 C 0.19 4.67 5.30 -4.98 -0.03 4.64 16 11 C -0.52 -13.89 9.32 -34.44 -0.32 -14.21 16 12 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -25.80 13.29 55.43 0.74 -25.07 16 15 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.06 0.85 6.36 -2.78 -0.02 0.83 16 20 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 21 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 22 H 0.07 0.88 7.40 -51.93 -0.38 0.50 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.53 8.02 -51.93 -0.42 0.11 16 25 H 0.09 0.91 3.73 -51.93 -0.19 0.71 16 26 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.10 1.74 7.88 -51.93 -0.41 1.34 16 29 H 0.33 5.95 8.20 -39.29 -0.32 5.63 16 30 H -0.01 -0.25 8.14 -51.93 -0.42 -0.68 16 31 H 0.03 0.81 8.13 -51.93 -0.42 0.39 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.09 1.03 5.57 -51.92 -0.29 0.74 16 34 H 0.08 1.01 7.82 -51.93 -0.41 0.61 16 LS Contribution 283.87 15.07 4.28 4.28 Total: -1.00 -32.02 283.87 -7.20 -39.22 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -4.92 Total: 1.02 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -0.33 Total: 9.57 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: -1.29 Total: -58.19 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.02 -7.20 -39.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260196006.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.894 kcal (2) G-P(sol) polarization free energy of solvation -32.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds