Wall clock time and date at job start Mon Mar 30 2020 02:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00379 * 2 1 4 4 H 1.48500 * 109.46895 * 270.00136 * 3 2 1 5 5 H 1.48499 * 109.46898 * 30.00476 * 3 2 1 6 6 H 1.48500 * 109.47031 * 149.99855 * 3 2 1 7 7 C 1.38813 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00220 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00359 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00548 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47679 * 180.02562 * 10 9 7 12 12 C 1.53040 * 109.46523 * 174.99961 * 11 10 9 13 13 C 1.53186 * 109.31499 * 181.38381 * 12 11 10 14 14 N 1.46930 * 108.89218 * 305.29441 * 13 12 11 15 15 C 1.34779 * 120.63119 * 233.67839 * 14 13 12 16 16 N 1.34773 * 119.99728 * 354.77299 * 15 14 13 17 17 O 1.21583 * 120.00179 * 174.77560 * 15 14 13 18 18 C 1.47203 * 118.55698 * 53.54313 * 14 13 12 19 19 C 1.53045 * 109.45580 * 295.07002 * 11 10 9 20 20 H 0.97003 * 119.99677 * 359.97438 * 1 2 3 21 21 H 0.97001 * 119.99398 * 359.97438 * 9 7 2 22 22 H 1.09006 * 109.47201 * 59.99767 * 10 9 7 23 23 H 1.09004 * 109.47218 * 300.00327 * 10 9 7 24 24 H 1.09003 * 109.45819 * 55.02190 * 11 10 9 25 25 H 1.09006 * 109.49564 * 61.42889 * 12 11 10 26 26 H 1.09001 * 109.52391 * 301.35684 * 12 11 10 27 27 H 1.08998 * 109.58650 * 65.15252 * 13 12 11 28 28 H 1.08995 * 109.58957 * 185.43899 * 13 12 11 29 29 H 0.97009 * 120.00436 * 4.97354 * 16 15 14 30 30 H 0.97003 * 120.00066 * 184.96501 * 16 15 14 31 31 H 1.09000 * 109.53725 * 186.68070 * 18 14 13 32 32 H 1.08991 * 109.68291 * 66.36081 * 18 14 13 33 33 H 1.08997 * 109.49503 * 298.56048 * 19 11 10 34 34 H 1.08994 * 109.50263 * 58.66032 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0578 -3.6568 -0.0005 11 6 1.0636 -4.8198 -0.0012 12 6 1.8249 -6.1414 -0.1270 13 6 0.8245 -7.3010 -0.1620 14 7 -0.0424 -7.2174 1.0213 15 6 -0.1822 -8.2741 1.8462 16 7 0.3912 -9.4531 1.5340 17 8 -0.8256 -8.1637 2.8719 18 6 -0.7510 -5.9548 1.2867 19 6 0.2671 -4.8102 1.3056 20 1 -0.4850 0.8401 0.0004 21 1 0.3555 -2.3880 0.0002 22 1 2.6846 -3.7146 0.8895 23 1 2.6846 -3.7146 -0.8905 24 1 0.3802 -4.7127 -0.8436 25 1 2.4904 -6.2608 0.7281 26 1 2.4107 -6.1384 -1.0461 27 1 0.2177 -7.2329 -1.0650 28 1 1.3630 -8.2486 -0.1542 29 1 0.9636 -9.5227 0.7539 30 1 0.2316 -10.2323 2.0893 31 1 -1.2519 -6.0140 2.2530 32 1 -1.4876 -5.7756 0.5036 33 1 0.9472 -4.9421 2.1471 34 1 -0.2562 -3.8594 1.4058 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260229588.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:27 Heat of formation + Delta-G solvation = -25.118825 kcal Electronic energy + Delta-G solvation = -15963.431707 eV Core-core repulsion = 13317.232923 eV Total energy + Delta-G solvation = -2646.198784 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.27582 -37.72196 -34.92602 -33.83241 -32.54677 -30.86690 -30.19673 -26.61172 -23.86226 -23.16744 -21.96004 -20.49473 -19.42045 -18.36513 -17.09748 -16.84414 -15.45404 -14.97230 -14.73793 -14.37032 -13.96745 -13.68863 -13.58359 -13.34556 -12.82583 -12.41829 -12.10105 -11.82444 -11.18235 -10.97086 -10.81884 -10.49841 -10.34594 -10.16928 -10.10712 -9.94937 -9.77751 -9.63264 -8.85410 -8.54081 -6.89644 -5.75026 -3.03198 2.80127 3.18470 3.44763 3.49883 3.51690 4.03873 4.59306 4.77478 4.97035 5.04523 5.27114 5.40299 5.46235 5.58422 5.65035 5.84004 5.94294 5.98122 6.11833 6.18168 6.32267 6.37679 6.53744 6.62152 6.77913 6.83666 6.87148 6.94685 7.71596 7.82590 8.44341 8.58542 9.55408 10.13874 10.48424 11.48007 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.060754 B = 0.005191 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.767880 B = 5392.345903 C = 5646.394830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.093 4.093 12 C -0.127 4.127 13 C 0.113 3.887 14 N -0.625 5.625 15 C 0.708 3.292 16 N -0.872 5.872 17 O -0.598 6.598 18 C 0.127 3.873 19 C -0.125 4.125 20 H 0.255 0.745 21 H 0.384 0.616 22 H 0.017 0.983 23 H 0.018 0.982 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.395 0.605 30 H 0.411 0.589 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.935 -17.796 -1.436 17.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.112 4.112 12 C -0.166 4.166 13 C -0.010 4.010 14 N -0.363 5.363 15 C 0.408 3.592 16 N -0.442 5.442 17 O -0.476 6.476 18 C 0.005 3.995 19 C -0.163 4.163 20 H 0.065 0.935 21 H 0.218 0.782 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.225 0.775 30 H 0.242 0.758 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.603 -17.419 -0.794 17.511 hybrid contribution 0.509 0.596 -0.268 0.828 sum 2.112 -16.823 -1.062 16.989 Atomic orbital electron populations 1.69653 1.05096 1.25631 1.57881 1.24726 0.95513 0.97648 1.03086 0.86196 0.78663 0.83900 0.77479 1.21760 1.21770 1.20803 1.19233 0.91022 0.84253 1.42546 0.91283 1.42373 1.05853 0.99966 1.89436 1.20666 0.93162 0.85465 0.97646 1.21296 0.97824 0.94144 0.97974 1.21918 0.97618 0.94420 1.02634 1.21649 0.92473 0.98785 0.88139 1.47401 1.49417 1.12897 1.26593 1.15871 0.79808 0.80666 0.82892 1.43173 1.55535 1.11198 1.34301 1.90943 1.47229 1.83662 1.25813 1.21657 0.94163 0.81161 1.02564 1.21939 0.98152 0.98395 0.97826 0.93525 0.78227 0.96477 0.96464 0.90958 0.91539 0.90614 0.91215 0.91002 0.77474 0.75780 0.89110 0.91565 0.91857 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.40 5.32 -59.91 -0.32 -18.72 16 10 C 0.16 3.13 5.65 -4.05 -0.02 3.10 16 11 C -0.09 -1.44 2.19 -90.58 -0.20 -1.64 16 12 C -0.13 -1.48 5.36 -26.61 -0.14 -1.62 16 13 C 0.11 1.10 6.38 -3.71 -0.02 1.08 16 14 N -0.62 -7.96 2.98 -178.28 -0.53 -8.50 16 15 C 0.71 9.73 8.58 -86.92 -0.75 8.99 16 16 N -0.87 -7.66 8.78 27.63 0.24 -7.42 16 17 O -0.60 -10.86 16.62 5.29 0.09 -10.78 16 18 C 0.13 1.81 6.45 -3.55 -0.02 1.79 16 19 C -0.12 -1.98 5.25 -26.60 -0.14 -2.12 16 20 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 21 H 0.38 10.05 6.84 -40.82 -0.28 9.77 16 22 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.49 5.64 -51.93 -0.29 0.19 16 29 H 0.39 2.36 6.32 -40.82 -0.26 2.10 16 30 H 0.41 3.02 8.93 -40.82 -0.36 2.66 16 31 H 0.09 1.41 7.01 -51.93 -0.36 1.05 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.09 1.60 7.15 -51.93 -0.37 1.23 16 LS Contribution 276.15 15.07 4.16 4.16 Total: -1.00 -33.88 276.15 -7.06 -40.94 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -4.86 Total: 8.15 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -1.54 Total: 2.21 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: 0.12 Total: -62.16 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -33.88 -7.06 -40.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229588.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.820 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds