Wall clock time and date at job start Mon Mar 30 2020 02:55:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31614 * 1
3 3 Si 1.86803 * 120.00379 * 2 1
4 4 H 1.48500 * 109.46895 * 270.00136 * 3 2 1
5 5 H 1.48499 * 109.46898 * 30.00476 * 3 2 1
6 6 H 1.48500 * 109.47031 * 149.99855 * 3 2 1
7 7 C 1.38813 * 119.99737 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00220 * 179.97438 * 7 2 1
9 9 N 1.36937 * 120.00359 * 359.97438 * 7 2 1
10 10 C 1.46493 * 120.00548 * 180.02562 * 9 7 2
11 11 C 1.52999 * 109.47679 * 180.02562 * 10 9 7
12 12 C 1.53040 * 109.46523 * 174.99961 * 11 10 9
13 13 C 1.53186 * 109.31499 * 181.38381 * 12 11 10
14 14 N 1.46930 * 108.89218 * 305.29441 * 13 12 11
15 15 C 1.34779 * 120.63119 * 233.67839 * 14 13 12
16 16 N 1.34773 * 119.99728 * 354.77299 * 15 14 13
17 17 O 1.21583 * 120.00179 * 174.77560 * 15 14 13
18 18 C 1.47203 * 118.55698 * 53.54313 * 14 13 12
19 19 C 1.53045 * 109.45580 * 295.07002 * 11 10 9
20 20 H 0.97003 * 119.99677 * 359.97438 * 1 2 3
21 21 H 0.97001 * 119.99398 * 359.97438 * 9 7 2
22 22 H 1.09006 * 109.47201 * 59.99767 * 10 9 7
23 23 H 1.09004 * 109.47218 * 300.00327 * 10 9 7
24 24 H 1.09003 * 109.45819 * 55.02190 * 11 10 9
25 25 H 1.09006 * 109.49564 * 61.42889 * 12 11 10
26 26 H 1.09001 * 109.52391 * 301.35684 * 12 11 10
27 27 H 1.08998 * 109.58650 * 65.15252 * 13 12 11
28 28 H 1.08995 * 109.58957 * 185.43899 * 13 12 11
29 29 H 0.97009 * 120.00436 * 4.97354 * 16 15 14
30 30 H 0.97003 * 120.00066 * 184.96501 * 16 15 14
31 31 H 1.09000 * 109.53725 * 186.68070 * 18 14 13
32 32 H 1.08991 * 109.68291 * 66.36081 * 18 14 13
33 33 H 1.08997 * 109.49503 * 298.56048 * 19 11 10
34 34 H 1.08994 * 109.50263 * 58.66032 * 19 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4977 2.0463 -1.4001
5 1 1.4478 2.6526 0.7001
6 1 3.5478 1.4400 0.7001
7 6 2.0101 -1.2022 -0.0005
8 1 3.0901 -1.2023 -0.0010
9 7 1.3255 -2.3881 -0.0005
10 6 2.0578 -3.6568 -0.0005
11 6 1.0636 -4.8198 -0.0012
12 6 1.8249 -6.1414 -0.1270
13 6 0.8245 -7.3010 -0.1620
14 7 -0.0424 -7.2174 1.0213
15 6 -0.1822 -8.2741 1.8462
16 7 0.3912 -9.4531 1.5340
17 8 -0.8256 -8.1637 2.8719
18 6 -0.7510 -5.9548 1.2867
19 6 0.2671 -4.8102 1.3056
20 1 -0.4850 0.8401 0.0004
21 1 0.3555 -2.3880 0.0002
22 1 2.6846 -3.7146 0.8895
23 1 2.6846 -3.7146 -0.8905
24 1 0.3802 -4.7127 -0.8436
25 1 2.4904 -6.2608 0.7281
26 1 2.4107 -6.1384 -1.0461
27 1 0.2177 -7.2329 -1.0650
28 1 1.3630 -8.2486 -0.1542
29 1 0.9636 -9.5227 0.7539
30 1 0.2316 -10.2323 2.0893
31 1 -1.2519 -6.0140 2.2530
32 1 -1.4876 -5.7756 0.5036
33 1 0.9472 -4.9421 2.1471
34 1 -0.2562 -3.8594 1.4058
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260229588.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:55:27
Heat of formation + Delta-G solvation = -51.082733 kcal
Electronic energy + Delta-G solvation = -15964.557587 eV
Core-core repulsion = 13317.232923 eV
Total energy + Delta-G solvation = -2647.324664 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.137 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-41.32488 -38.94678 -36.53217 -35.00444 -34.03672 -32.19705 -31.71540 -28.14139
-25.56116 -24.32137 -23.42416 -21.73875 -20.49756 -19.47152 -18.95283 -17.85629
-16.72046 -16.46691 -16.04064 -15.62388 -15.36482 -15.29393 -15.00135 -14.56858
-14.13468 -13.87697 -13.45042 -13.15281 -12.91047 -12.73952 -12.23249 -12.13567
-11.97059 -11.66588 -11.54212 -11.37165 -11.15435 -10.90382 -10.70022 -9.56612
-8.97312 -7.94248 -5.22365 1.47695 1.49402 1.57797 1.83469 2.13857
2.57013 3.26173 3.39455 3.76213 3.88179 3.90727 4.10981 4.31835
4.36360 4.48163 4.62138 4.75096 4.77294 4.90824 5.00558 5.02434
5.11888 5.18493 5.28579 5.48424 5.56054 5.57937 5.91210 6.03947
6.28670 6.95137 7.34997 7.63323 8.12526 8.35279 9.29397
Molecular weight = 227.14amu
Principal moments of inertia in cm(-1)
A = 0.060754 B = 0.005191 C = 0.004958
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 460.767880 B = 5392.345903 C = 5646.394830
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.969 5.969
2 C -0.075 4.075
3 Si 0.972 3.028
4 H -0.285 1.285
5 H -0.296 1.296
6 H -0.271 1.271
7 C -0.247 4.247
8 H 0.074 0.926
9 N -0.745 5.745
10 C 0.156 3.844
11 C -0.084 4.084
12 C -0.120 4.120
13 C 0.112 3.888
14 N -0.626 5.626
15 C 0.701 3.299
16 N -0.847 5.847
17 O -0.649 6.649
18 C 0.135 3.865
19 C -0.116 4.116
20 H 0.251 0.749
21 H 0.375 0.625
22 H 0.011 0.989
23 H 0.025 0.975
24 H 0.071 0.929
25 H 0.063 0.937
26 H 0.098 0.902
27 H 0.086 0.914
28 H 0.111 0.889
29 H 0.412 0.588
30 H 0.420 0.580
31 H 0.072 0.928
32 H 0.077 0.923
33 H 0.049 0.951
34 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.334 -19.411 -2.600 19.866
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.620 5.620
2 C -0.267 4.267
3 Si 0.801 3.199
4 H -0.212 1.212
5 H -0.223 1.223
6 H -0.196 1.196
7 C -0.379 4.379
8 H 0.092 0.908
9 N -0.388 5.388
10 C 0.029 3.971
11 C -0.103 4.103
12 C -0.158 4.158
13 C -0.010 4.010
14 N -0.363 5.363
15 C 0.400 3.600
16 N -0.418 5.418
17 O -0.532 6.532
18 C 0.011 3.989
19 C -0.155 4.155
20 H 0.060 0.940
21 H 0.207 0.793
22 H 0.029 0.971
23 H 0.043 0.957
24 H 0.090 0.910
25 H 0.081 0.919
26 H 0.117 0.883
27 H 0.104 0.896
28 H 0.129 0.871
29 H 0.246 0.754
30 H 0.253 0.747
31 H 0.090 0.910
32 H 0.096 0.904
33 H 0.068 0.932
34 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 3.073 -19.102 -2.000 19.451
hybrid contribution 0.125 1.039 0.089 1.051
sum 3.199 -18.062 -1.911 18.443
Atomic orbital electron populations
1.69810 1.06591 1.26054 1.59548 1.25544 0.96379 1.01038 1.03724
0.85155 0.77662 0.79541 0.77496 1.21210 1.22256 1.19587 1.19646
0.91480 0.85561 1.41188 0.90838 1.42597 1.05688 1.01180 1.89300
1.20857 0.93914 0.84947 0.97339 1.21206 0.97046 0.94710 0.97325
1.21878 0.97730 0.92549 1.03678 1.21892 0.92032 0.99725 0.87322
1.47398 1.49582 1.11978 1.27335 1.16112 0.79736 0.81788 0.82320
1.42911 1.54430 1.09776 1.34700 1.90913 1.49559 1.84635 1.28088
1.21420 0.93841 0.81515 1.02107 1.21783 0.98119 0.97724 0.97840
0.94011 0.79292 0.97097 0.95700 0.91024 0.91860 0.88331 0.89588
0.87125 0.75431 0.74696 0.90979 0.90432 0.93180 0.92424
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -59.71 13.06 21.65 0.28 -59.42 16
2 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16
3 Si 0.97 46.42 29.55 68.60 2.03 48.45 16
4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16
5 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16
6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16
7 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16
8 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16
9 N -0.74 -37.86 5.32 -343.46 -1.83 -39.69 16
10 C 0.16 6.07 5.65 86.38 0.49 6.56 16
11 C -0.08 -2.49 2.19 -10.77 -0.02 -2.52 16
12 C -0.12 -2.41 5.36 30.67 0.16 -2.24 16
13 C 0.11 1.75 6.38 86.36 0.55 2.30 16
14 N -0.63 -14.70 2.98 -836.21 -2.50 -17.20 16
15 C 0.70 18.06 8.58 179.05 1.54 19.59 16
16 N -0.85 -12.24 8.78 -184.75 -1.62 -13.86 16
17 O -0.65 -23.49 16.62 -3.98 -0.07 -23.56 16
18 C 0.13 3.81 6.45 86.31 0.56 4.37 16
19 C -0.12 -3.74 5.25 30.68 0.16 -3.58 16
20 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16
21 H 0.37 20.16 6.84 -92.71 -0.63 19.53 16
22 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16
23 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16
24 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16
25 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16
26 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16
27 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16
28 H 0.11 0.90 5.64 -2.39 -0.01 0.89 16
29 H 0.41 3.08 6.32 -92.70 -0.59 2.50 16
30 H 0.42 5.00 8.93 -92.71 -0.83 4.18 16
31 H 0.07 2.32 7.01 -2.39 -0.02 2.31 16
32 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16
33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16
34 H 0.06 2.20 7.15 -2.39 -0.02 2.18 16
Total: -1.00 -74.50 276.15 0.12 -74.39
By element:
Atomic # 1 Polarization: 24.27 SS G_CDS: -0.92 Total: 23.34 kcal
Atomic # 6 Polarization: 2.81 SS G_CDS: 4.74 Total: 7.55 kcal
Atomic # 7 Polarization: -124.51 SS G_CDS: -5.66 Total: -130.17 kcal
Atomic # 8 Polarization: -23.49 SS G_CDS: -0.07 Total: -23.56 kcal
Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal
Total: -74.50 0.12 -74.39 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260229588.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.303 kcal
(2) G-P(sol) polarization free energy of solvation -74.501 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.198 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.115 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.385 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.083 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds