Wall clock time and date at job start Mon Mar 30 2020 02:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00379 * 2 1 4 4 H 1.48500 * 109.46895 * 270.00136 * 3 2 1 5 5 H 1.48499 * 109.46898 * 30.00476 * 3 2 1 6 6 H 1.48500 * 109.47031 * 149.99855 * 3 2 1 7 7 C 1.38813 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00220 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00359 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00548 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47679 * 180.02562 * 10 9 7 12 12 C 1.53040 * 109.46523 * 174.99961 * 11 10 9 13 13 C 1.53186 * 109.31499 * 181.38381 * 12 11 10 14 14 N 1.46930 * 108.89218 * 305.29441 * 13 12 11 15 15 C 1.34779 * 120.63119 * 233.67839 * 14 13 12 16 16 N 1.34773 * 119.99728 * 354.77299 * 15 14 13 17 17 O 1.21583 * 120.00179 * 174.77560 * 15 14 13 18 18 C 1.47203 * 118.55698 * 53.54313 * 14 13 12 19 19 C 1.53045 * 109.45580 * 295.07002 * 11 10 9 20 20 H 0.97003 * 119.99677 * 359.97438 * 1 2 3 21 21 H 0.97001 * 119.99398 * 359.97438 * 9 7 2 22 22 H 1.09006 * 109.47201 * 59.99767 * 10 9 7 23 23 H 1.09004 * 109.47218 * 300.00327 * 10 9 7 24 24 H 1.09003 * 109.45819 * 55.02190 * 11 10 9 25 25 H 1.09006 * 109.49564 * 61.42889 * 12 11 10 26 26 H 1.09001 * 109.52391 * 301.35684 * 12 11 10 27 27 H 1.08998 * 109.58650 * 65.15252 * 13 12 11 28 28 H 1.08995 * 109.58957 * 185.43899 * 13 12 11 29 29 H 0.97009 * 120.00436 * 4.97354 * 16 15 14 30 30 H 0.97003 * 120.00066 * 184.96501 * 16 15 14 31 31 H 1.09000 * 109.53725 * 186.68070 * 18 14 13 32 32 H 1.08991 * 109.68291 * 66.36081 * 18 14 13 33 33 H 1.08997 * 109.49503 * 298.56048 * 19 11 10 34 34 H 1.08994 * 109.50263 * 58.66032 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0578 -3.6568 -0.0005 11 6 1.0636 -4.8198 -0.0012 12 6 1.8249 -6.1414 -0.1270 13 6 0.8245 -7.3010 -0.1620 14 7 -0.0424 -7.2174 1.0213 15 6 -0.1822 -8.2741 1.8462 16 7 0.3912 -9.4531 1.5340 17 8 -0.8256 -8.1637 2.8719 18 6 -0.7510 -5.9548 1.2867 19 6 0.2671 -4.8102 1.3056 20 1 -0.4850 0.8401 0.0004 21 1 0.3555 -2.3880 0.0002 22 1 2.6846 -3.7146 0.8895 23 1 2.6846 -3.7146 -0.8905 24 1 0.3802 -4.7127 -0.8436 25 1 2.4904 -6.2608 0.7281 26 1 2.4107 -6.1384 -1.0461 27 1 0.2177 -7.2329 -1.0650 28 1 1.3630 -8.2486 -0.1542 29 1 0.9636 -9.5227 0.7539 30 1 0.2316 -10.2323 2.0893 31 1 -1.2519 -6.0140 2.2530 32 1 -1.4876 -5.7756 0.5036 33 1 0.9472 -4.9421 2.1471 34 1 -0.2562 -3.8594 1.4058 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260229588.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:27 Heat of formation + Delta-G solvation = -51.082733 kcal Electronic energy + Delta-G solvation = -15964.557587 eV Core-core repulsion = 13317.232923 eV Total energy + Delta-G solvation = -2647.324664 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.32488 -38.94678 -36.53217 -35.00444 -34.03672 -32.19705 -31.71540 -28.14139 -25.56116 -24.32137 -23.42416 -21.73875 -20.49756 -19.47152 -18.95283 -17.85629 -16.72046 -16.46691 -16.04064 -15.62388 -15.36482 -15.29393 -15.00135 -14.56858 -14.13468 -13.87697 -13.45042 -13.15281 -12.91047 -12.73952 -12.23249 -12.13567 -11.97059 -11.66588 -11.54212 -11.37165 -11.15435 -10.90382 -10.70022 -9.56612 -8.97312 -7.94248 -5.22365 1.47695 1.49402 1.57797 1.83469 2.13857 2.57013 3.26173 3.39455 3.76213 3.88179 3.90727 4.10981 4.31835 4.36360 4.48163 4.62138 4.75096 4.77294 4.90824 5.00558 5.02434 5.11888 5.18493 5.28579 5.48424 5.56054 5.57937 5.91210 6.03947 6.28670 6.95137 7.34997 7.63323 8.12526 8.35279 9.29397 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.060754 B = 0.005191 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.767880 B = 5392.345903 C = 5646.394830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.972 3.028 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.247 4.247 8 H 0.074 0.926 9 N -0.745 5.745 10 C 0.156 3.844 11 C -0.084 4.084 12 C -0.120 4.120 13 C 0.112 3.888 14 N -0.626 5.626 15 C 0.701 3.299 16 N -0.847 5.847 17 O -0.649 6.649 18 C 0.135 3.865 19 C -0.116 4.116 20 H 0.251 0.749 21 H 0.375 0.625 22 H 0.011 0.989 23 H 0.025 0.975 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.412 0.588 30 H 0.420 0.580 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.334 -19.411 -2.600 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.196 1.196 7 C -0.379 4.379 8 H 0.092 0.908 9 N -0.388 5.388 10 C 0.029 3.971 11 C -0.103 4.103 12 C -0.158 4.158 13 C -0.010 4.010 14 N -0.363 5.363 15 C 0.400 3.600 16 N -0.418 5.418 17 O -0.532 6.532 18 C 0.011 3.989 19 C -0.155 4.155 20 H 0.060 0.940 21 H 0.207 0.793 22 H 0.029 0.971 23 H 0.043 0.957 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.117 0.883 27 H 0.104 0.896 28 H 0.129 0.871 29 H 0.246 0.754 30 H 0.253 0.747 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.073 -19.102 -2.000 19.451 hybrid contribution 0.125 1.039 0.089 1.051 sum 3.199 -18.062 -1.911 18.443 Atomic orbital electron populations 1.69810 1.06591 1.26054 1.59548 1.25544 0.96379 1.01038 1.03724 0.85155 0.77662 0.79541 0.77496 1.21210 1.22256 1.19587 1.19646 0.91480 0.85561 1.41188 0.90838 1.42597 1.05688 1.01180 1.89300 1.20857 0.93914 0.84947 0.97339 1.21206 0.97046 0.94710 0.97325 1.21878 0.97730 0.92549 1.03678 1.21892 0.92032 0.99725 0.87322 1.47398 1.49582 1.11978 1.27335 1.16112 0.79736 0.81788 0.82320 1.42911 1.54430 1.09776 1.34700 1.90913 1.49559 1.84635 1.28088 1.21420 0.93841 0.81515 1.02107 1.21783 0.98119 0.97724 0.97840 0.94011 0.79292 0.97097 0.95700 0.91024 0.91860 0.88331 0.89588 0.87125 0.75431 0.74696 0.90979 0.90432 0.93180 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.71 13.06 21.65 0.28 -59.42 16 2 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 3 Si 0.97 46.42 29.55 68.60 2.03 48.45 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.74 -37.86 5.32 -343.46 -1.83 -39.69 16 10 C 0.16 6.07 5.65 86.38 0.49 6.56 16 11 C -0.08 -2.49 2.19 -10.77 -0.02 -2.52 16 12 C -0.12 -2.41 5.36 30.67 0.16 -2.24 16 13 C 0.11 1.75 6.38 86.36 0.55 2.30 16 14 N -0.63 -14.70 2.98 -836.21 -2.50 -17.20 16 15 C 0.70 18.06 8.58 179.05 1.54 19.59 16 16 N -0.85 -12.24 8.78 -184.75 -1.62 -13.86 16 17 O -0.65 -23.49 16.62 -3.98 -0.07 -23.56 16 18 C 0.13 3.81 6.45 86.31 0.56 4.37 16 19 C -0.12 -3.74 5.25 30.68 0.16 -3.58 16 20 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 21 H 0.37 20.16 6.84 -92.71 -0.63 19.53 16 22 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 23 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.11 0.90 5.64 -2.39 -0.01 0.89 16 29 H 0.41 3.08 6.32 -92.70 -0.59 2.50 16 30 H 0.42 5.00 8.93 -92.71 -0.83 4.18 16 31 H 0.07 2.32 7.01 -2.39 -0.02 2.31 16 32 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 2.20 7.15 -2.39 -0.02 2.18 16 Total: -1.00 -74.50 276.15 0.12 -74.39 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: -0.92 Total: 23.34 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 4.74 Total: 7.55 kcal Atomic # 7 Polarization: -124.51 SS G_CDS: -5.66 Total: -130.17 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.07 Total: -23.56 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -74.50 0.12 -74.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229588.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.303 kcal (2) G-P(sol) polarization free energy of solvation -74.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds