Wall clock time and date at job start Mon Mar 30 2020 03:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34776 * 120.00146 * 2 1 4 4 O 1.21592 * 119.99932 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00160 * 179.97438 * 3 2 1 6 6 C 1.47422 * 125.64827 * 0.02562 * 5 3 2 7 7 C 1.54905 * 104.83292 * 204.09168 * 6 5 3 8 8 C 1.55154 * 101.58291 * 322.98910 * 7 6 5 9 9 H 1.08997 * 110.72269 * 276.96498 * 8 7 6 10 10 N 1.46499 * 110.72164 * 153.86607 * 8 7 6 11 11 C 1.46501 * 119.99779 * 300.00258 * 10 8 7 12 12 C 1.36929 * 120.00076 * 120.00319 * 10 8 7 13 13 H 1.08000 * 120.00646 * 23.59832 * 12 10 8 14 14 C 1.38818 * 120.00133 * 203.59936 * 12 10 8 15 15 N 1.31623 * 119.99576 * 15.66950 * 14 12 10 16 16 Si 1.86796 * 120.00200 * 195.67224 * 14 12 10 17 17 H 1.48491 * 109.47345 * 59.99842 * 16 14 12 18 18 H 1.48500 * 109.46931 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47168 * 299.99520 * 16 14 12 20 20 C 1.47022 * 125.64888 * 179.71143 * 5 3 2 21 21 H 1.08994 * 109.47041 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46842 * 59.99917 * 1 2 3 23 23 H 1.09002 * 109.47256 * 300.00321 * 1 2 3 24 24 H 0.97000 * 119.99729 * 179.97438 * 2 1 3 25 25 H 1.09007 * 110.36609 * 322.93438 * 6 5 3 26 26 H 1.09001 * 110.36363 * 85.25067 * 6 5 3 27 27 H 1.09003 * 111.00750 * 81.06476 * 7 6 5 28 28 H 1.08999 * 111.00344 * 204.87609 * 7 6 5 29 29 H 1.08999 * 109.47357 * 95.23290 * 11 10 8 30 30 H 1.08999 * 109.46823 * 215.23095 * 11 10 8 31 31 H 1.09000 * 109.47474 * 335.22998 * 11 10 8 32 32 H 0.96998 * 119.99771 * 180.02562 * 15 14 12 33 33 H 1.09001 * 109.88557 * 298.39963 * 20 5 3 34 34 H 1.09005 * 109.87941 * 59.56407 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.3459 -0.0308 0.0006 7 6 5.6876 0.4435 0.6125 8 6 5.8079 1.8755 0.0273 9 1 6.2263 1.8471 -0.9787 10 7 6.6204 2.7258 0.9008 11 6 6.2037 2.9642 2.2849 12 6 7.7694 3.2977 0.4236 13 1 7.8938 3.4553 -0.6376 14 6 8.7745 3.6748 1.3037 15 7 8.7741 3.2175 2.5379 16 14 10.1274 4.8311 0.7364 17 1 9.5284 6.1189 0.3029 18 1 11.0713 5.0758 1.8565 19 1 10.8585 4.2174 -0.4011 20 6 4.3436 2.3619 -0.0054 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.9500 -0.8401 0.0004 25 1 3.9041 -0.8145 0.6162 26 1 4.4986 -0.3881 -1.0178 27 1 5.6332 0.4695 1.7008 28 1 6.5129 -0.1858 0.2796 29 1 6.7090 2.2578 2.9434 30 1 6.4668 3.9819 2.5733 31 1 5.1251 2.8305 2.3677 32 1 9.4762 3.4813 3.1531 33 1 4.1638 2.9425 -0.9102 34 1 4.1373 2.9704 0.8751 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260312427.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:29 Heat of formation + Delta-G solvation = 5.100732 kcal Electronic energy + Delta-G solvation = -16234.247440 eV Core-core repulsion = 13589.359074 eV Total energy + Delta-G solvation = -2644.888366 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.93350 -37.59046 -34.74379 -34.39799 -31.55526 -29.78944 -28.12855 -26.28286 -25.95601 -23.23325 -22.28564 -19.88546 -19.16911 -18.03782 -17.02071 -16.04416 -15.63264 -14.99385 -14.48503 -14.22696 -13.53254 -13.26620 -13.20481 -12.62712 -12.50731 -12.35787 -12.13096 -11.70541 -11.33101 -10.99160 -10.76150 -10.56237 -10.46461 -10.24416 -9.96149 -9.86275 -9.84225 -9.10758 -8.56926 -8.17195 -6.79557 -5.75891 -3.22906 2.85625 3.38612 3.42565 3.44492 3.46091 4.17319 4.47999 5.04604 5.09241 5.26374 5.33980 5.49130 5.52234 5.57351 5.72393 5.78842 5.92924 6.03129 6.35778 6.43819 6.51382 6.54112 6.63150 6.83252 6.91053 7.23782 7.33261 7.69983 7.78423 8.17484 8.36172 8.80200 9.19034 9.82129 10.31595 11.28774 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.061487 B = 0.005893 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.273666 B = 4750.469147 C = 4832.999110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.754 5.754 3 C 0.717 3.283 4 O -0.595 6.595 5 N -0.630 5.630 6 C 0.100 3.900 7 C -0.149 4.149 8 C 0.173 3.827 9 H 0.079 0.921 10 N -0.585 5.585 11 C 0.157 3.843 12 C -0.262 4.262 13 H 0.069 0.931 14 C 0.006 3.994 15 N -0.903 5.903 16 Si 0.905 3.095 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.283 1.283 20 C 0.105 3.895 21 H 0.071 0.929 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.396 0.604 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.034 0.966 30 H 0.039 0.961 31 H 0.005 0.995 32 H 0.254 0.746 33 H 0.059 0.941 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.451 -9.312 -4.172 14.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.411 5.411 3 C 0.418 3.582 4 O -0.473 6.473 5 N -0.368 5.368 6 C -0.023 4.023 7 C -0.190 4.190 8 C 0.062 3.938 9 H 0.097 0.903 10 N -0.305 5.305 11 C 0.012 3.988 12 C -0.392 4.392 13 H 0.087 0.913 14 C -0.193 4.193 15 N -0.547 5.547 16 Si 0.735 3.265 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.209 1.209 20 C -0.020 4.020 21 H 0.090 0.910 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.229 0.771 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.023 0.977 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.847 -8.444 -4.001 14.317 hybrid contribution 0.982 0.074 -0.148 0.996 sum -9.865 -8.371 -4.150 13.587 Atomic orbital electron populations 1.21330 0.78591 1.01507 1.02100 1.44938 1.07412 1.07274 1.81468 1.15494 0.80528 0.84056 0.78078 1.90905 1.67256 1.30511 1.58663 1.47613 1.02981 1.09285 1.76953 1.22295 0.92117 0.87758 1.00141 1.23366 0.94298 0.99753 1.01558 1.21307 0.88584 0.88611 0.95267 0.90334 1.43838 1.23955 1.53686 1.09048 1.20808 0.92610 1.00293 0.85069 1.19161 0.93213 1.34059 0.92746 0.91301 1.25007 0.97398 1.00421 0.96453 1.70071 1.34340 1.44818 1.05458 0.86329 0.81416 0.81253 0.77498 1.20989 1.21651 1.20880 1.22592 0.91053 0.86450 1.01876 0.90991 0.92606 0.92590 0.77099 0.91988 0.91928 0.90656 0.90417 0.94809 0.94211 0.97657 0.93635 0.92305 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.09 10.70 59.85 0.64 1.73 16 2 N -0.75 -9.32 5.67 -72.07 -0.41 -9.73 16 3 C 0.72 12.34 8.49 -86.92 -0.74 11.60 16 4 O -0.59 -12.66 16.67 5.28 0.09 -12.58 16 5 N -0.63 -10.52 3.33 -176.23 -0.59 -11.11 16 6 C 0.10 1.35 6.57 -2.53 -0.02 1.34 16 7 C -0.15 -2.51 6.66 -24.59 -0.16 -2.67 16 8 C 0.17 3.43 3.43 -66.09 -0.23 3.20 16 9 H 0.08 1.53 7.93 -51.93 -0.41 1.12 16 10 N -0.58 -14.32 2.93 -171.38 -0.50 -14.83 16 11 C 0.16 3.83 7.77 59.85 0.46 4.30 16 12 C -0.26 -7.06 9.59 -15.06 -0.14 -7.20 16 13 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 14 C 0.01 0.17 5.04 -17.43 -0.09 0.08 16 15 N -0.90 -25.93 10.90 55.49 0.60 -25.32 16 16 Si 0.91 21.57 29.58 -169.99 -5.03 16.54 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 20 C 0.11 2.01 6.41 -3.06 -0.02 1.99 16 21 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.40 3.77 7.31 -40.82 -0.30 3.47 16 25 H 0.06 0.68 7.30 -51.92 -0.38 0.30 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.07 1.39 7.34 -51.93 -0.38 1.01 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.03 0.89 7.31 -51.93 -0.38 0.51 16 30 H 0.04 1.05 7.46 -51.93 -0.39 0.66 16 31 H 0.00 0.11 6.18 -51.93 -0.32 -0.21 16 32 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.52 6.03 -51.93 -0.31 1.21 16 LS Contribution 276.94 15.07 4.17 4.17 Total: -1.00 -32.26 276.94 -6.91 -39.16 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -4.95 Total: -0.68 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: -0.29 Total: 14.37 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.89 Total: -60.99 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.09 Total: -12.58 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.26 -6.91 -39.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260312427.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.265 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds