Wall clock time and date at job start Mon Mar 30 2020 03:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34776 * 120.00146 * 2 1 4 4 O 1.21592 * 119.99932 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00160 * 179.97438 * 3 2 1 6 6 C 1.47422 * 125.64827 * 0.02562 * 5 3 2 7 7 C 1.54905 * 104.83292 * 204.09168 * 6 5 3 8 8 C 1.55154 * 101.58291 * 322.98910 * 7 6 5 9 9 H 1.08997 * 110.72269 * 276.96498 * 8 7 6 10 10 N 1.46499 * 110.72164 * 153.86607 * 8 7 6 11 11 C 1.46501 * 119.99779 * 300.00258 * 10 8 7 12 12 C 1.36929 * 120.00076 * 120.00319 * 10 8 7 13 13 H 1.08000 * 120.00646 * 23.59832 * 12 10 8 14 14 C 1.38818 * 120.00133 * 203.59936 * 12 10 8 15 15 N 1.31623 * 119.99576 * 15.66950 * 14 12 10 16 16 Si 1.86796 * 120.00200 * 195.67224 * 14 12 10 17 17 H 1.48491 * 109.47345 * 59.99842 * 16 14 12 18 18 H 1.48500 * 109.46931 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47168 * 299.99520 * 16 14 12 20 20 C 1.47022 * 125.64888 * 179.71143 * 5 3 2 21 21 H 1.08994 * 109.47041 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46842 * 59.99917 * 1 2 3 23 23 H 1.09002 * 109.47256 * 300.00321 * 1 2 3 24 24 H 0.97000 * 119.99729 * 179.97438 * 2 1 3 25 25 H 1.09007 * 110.36609 * 322.93438 * 6 5 3 26 26 H 1.09001 * 110.36363 * 85.25067 * 6 5 3 27 27 H 1.09003 * 111.00750 * 81.06476 * 7 6 5 28 28 H 1.08999 * 111.00344 * 204.87609 * 7 6 5 29 29 H 1.08999 * 109.47357 * 95.23290 * 11 10 8 30 30 H 1.08999 * 109.46823 * 215.23095 * 11 10 8 31 31 H 1.09000 * 109.47474 * 335.22998 * 11 10 8 32 32 H 0.96998 * 119.99771 * 180.02562 * 15 14 12 33 33 H 1.09001 * 109.88557 * 298.39963 * 20 5 3 34 34 H 1.09005 * 109.87941 * 59.56407 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.3459 -0.0308 0.0006 7 6 5.6876 0.4435 0.6125 8 6 5.8079 1.8755 0.0273 9 1 6.2263 1.8471 -0.9787 10 7 6.6204 2.7258 0.9008 11 6 6.2037 2.9642 2.2849 12 6 7.7694 3.2977 0.4236 13 1 7.8938 3.4553 -0.6376 14 6 8.7745 3.6748 1.3037 15 7 8.7741 3.2175 2.5379 16 14 10.1274 4.8311 0.7364 17 1 9.5284 6.1189 0.3029 18 1 11.0713 5.0758 1.8565 19 1 10.8585 4.2174 -0.4011 20 6 4.3436 2.3619 -0.0054 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.9500 -0.8401 0.0004 25 1 3.9041 -0.8145 0.6162 26 1 4.4986 -0.3881 -1.0178 27 1 5.6332 0.4695 1.7008 28 1 6.5129 -0.1858 0.2796 29 1 6.7090 2.2578 2.9434 30 1 6.4668 3.9819 2.5733 31 1 5.1251 2.8305 2.3677 32 1 9.4762 3.4813 3.1531 33 1 4.1638 2.9425 -0.9102 34 1 4.1373 2.9704 0.8751 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260312427.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:28 Heat of formation + Delta-G solvation = -18.076565 kcal Electronic energy + Delta-G solvation = -16235.252483 eV Core-core repulsion = 13589.359074 eV Total energy + Delta-G solvation = -2645.893409 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.26607 -39.08298 -36.51614 -35.57716 -33.38260 -31.33029 -29.56380 -28.07735 -27.32346 -24.87729 -23.76176 -21.15722 -20.77640 -19.29157 -18.92402 -17.57044 -16.96175 -16.63686 -15.88854 -15.67290 -15.05282 -14.91715 -14.54721 -14.31870 -13.92655 -13.75928 -13.18216 -13.03266 -12.88913 -12.85631 -12.54178 -12.37856 -12.24986 -12.06923 -11.81720 -11.47826 -11.38709 -10.62398 -10.26695 -9.46049 -8.79924 -7.83402 -5.32308 1.48498 1.52044 1.57620 1.64617 2.10739 2.52258 3.10058 3.29866 3.58230 3.84028 3.95896 4.29500 4.35189 4.46121 4.49957 4.65182 4.67932 4.74412 4.94462 4.96835 5.01444 5.13678 5.25983 5.32158 5.40886 5.50190 5.65041 5.67091 6.09108 6.32430 7.00017 7.13120 7.54076 7.83877 8.29699 9.19964 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.061487 B = 0.005893 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.273666 B = 4750.469147 C = 4832.999110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.735 5.735 3 C 0.709 3.291 4 O -0.644 6.644 5 N -0.633 5.633 6 C 0.110 3.890 7 C -0.141 4.141 8 C 0.166 3.834 9 H 0.084 0.916 10 N -0.601 5.601 11 C 0.177 3.823 12 C -0.270 4.270 13 H 0.074 0.926 14 C -0.047 4.047 15 N -0.934 5.934 16 Si 0.968 3.032 17 H -0.283 1.283 18 H -0.295 1.295 19 H -0.271 1.271 20 C 0.117 3.883 21 H 0.118 0.882 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.413 0.587 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.012 0.988 30 H 0.010 0.990 31 H 0.023 0.977 32 H 0.249 0.751 33 H 0.053 0.947 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.100 -11.248 -5.431 16.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.392 5.392 3 C 0.411 3.589 4 O -0.526 6.526 5 N -0.370 5.370 6 C -0.012 4.012 7 C -0.181 4.181 8 C 0.058 3.942 9 H 0.102 0.898 10 N -0.322 5.322 11 C 0.032 3.968 12 C -0.400 4.400 13 H 0.092 0.908 14 C -0.243 4.243 15 N -0.580 5.580 16 Si 0.796 3.204 17 H -0.209 1.209 18 H -0.222 1.222 19 H -0.197 1.197 20 C -0.009 4.009 21 H 0.136 0.864 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.250 0.750 25 H 0.115 0.885 26 H 0.110 0.890 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.031 0.969 30 H 0.029 0.971 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.521 -10.464 -5.293 16.439 hybrid contribution 1.094 0.635 0.207 1.282 sum -10.427 -9.828 -5.086 15.205 Atomic orbital electron populations 1.21560 0.76962 1.04248 1.01148 1.44844 1.08334 1.06381 1.79645 1.15766 0.80480 0.84729 0.77946 1.90871 1.68231 1.32690 1.60813 1.47571 1.03143 1.09388 1.76947 1.22441 0.89540 0.87005 1.02257 1.23195 0.96936 0.97622 1.00346 1.21476 0.88046 0.89830 0.94884 0.89762 1.43993 1.23986 1.54982 1.09268 1.20463 0.93230 0.97826 0.85249 1.19521 0.93687 1.33723 0.93076 0.90785 1.25747 0.99789 1.02055 0.96662 1.70221 1.35095 1.46201 1.06471 0.85338 0.78771 0.79259 0.77044 1.20889 1.22170 1.19686 1.22214 0.91129 0.87296 1.00270 0.86355 0.93419 0.93780 0.75008 0.88512 0.88980 0.92604 0.89316 0.96929 0.97134 0.95853 0.94227 0.92908 0.93841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.79 10.70 127.77 1.37 3.16 16 2 N -0.74 -15.81 5.67 -500.18 -2.84 -18.65 16 3 C 0.71 23.19 8.49 179.05 1.52 24.71 16 4 O -0.64 -27.29 16.67 -4.01 -0.07 -27.36 16 5 N -0.63 -19.88 3.33 -829.72 -2.76 -22.64 16 6 C 0.11 2.54 6.57 86.85 0.57 3.11 16 7 C -0.14 -4.44 6.66 31.98 0.21 -4.23 16 8 C 0.17 6.46 3.43 46.18 0.16 6.62 16 9 H 0.08 3.17 7.93 -2.39 -0.02 3.15 16 10 N -0.60 -29.69 2.93 -696.14 -2.04 -31.73 16 11 C 0.18 8.93 7.77 127.77 0.99 9.92 16 12 C -0.27 -14.58 9.59 84.04 0.81 -13.78 16 13 H 0.07 3.83 7.85 -2.91 -0.02 3.81 16 14 C -0.05 -2.59 5.04 84.86 0.43 -2.16 16 15 N -0.93 -54.75 10.90 21.65 0.24 -54.52 16 16 Si 0.97 44.61 29.58 68.60 2.03 46.64 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 20 C 0.12 4.43 6.41 86.73 0.56 4.99 16 21 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.41 5.95 7.31 -92.71 -0.68 5.28 16 25 H 0.10 1.64 7.30 -2.38 -0.02 1.63 16 26 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.06 2.00 7.34 -2.39 -0.02 1.98 16 28 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.01 0.68 7.31 -2.39 -0.02 0.66 16 30 H 0.01 0.55 7.46 -2.39 -0.02 0.53 16 31 H 0.02 1.06 6.18 -2.39 -0.01 1.04 16 32 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 33 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.04 1.89 6.03 -2.38 -0.01 1.87 16 Total: -1.00 -71.53 276.94 1.59 -69.94 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 0.41 Total: 5.97 kcal Atomic # 6 Polarization: 25.73 SS G_CDS: 6.61 Total: 32.34 kcal Atomic # 7 Polarization: -120.14 SS G_CDS: -7.40 Total: -127.54 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.07 Total: -27.36 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -71.53 1.59 -69.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260312427.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.867 kcal (2) G-P(sol) polarization free energy of solvation -71.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds