Wall clock time and date at job start Mon Mar 30 2020 03:15:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86801 * 120.00169 * 2 1
4 4 H 1.48506 * 109.47000 * 269.99838 * 3 2 1
5 5 H 1.48506 * 109.47012 * 29.99609 * 3 2 1
6 6 H 1.48500 * 109.47204 * 149.99355 * 3 2 1
7 7 C 1.37873 * 119.99958 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99838 * 0.02562 * 7 2 1
9 9 C 1.50700 * 120.00127 * 180.02562 * 7 2 1
10 10 F 1.39905 * 109.40446 * 60.00519 * 9 7 2
11 11 C 1.52939 * 109.40926 * 300.16054 * 9 7 2
12 12 C 1.53211 * 108.69462 * 298.10954 * 11 9 7
13 13 C 1.52834 * 108.77131 * 301.17458 * 12 11 9
14 14 N 1.47150 * 110.11243 * 59.85227 * 13 12 11
15 15 C 1.47153 * 109.27303 * 175.64074 * 14 13 12
16 16 C 1.52842 * 110.11545 * 184.34232 * 15 14 13
17 17 C 1.53219 * 108.82702 * 300.17804 * 16 15 14
18 18 C 1.52937 * 108.68410 * 58.72901 * 17 16 15
19 19 C 1.46704 * 111.52442 * 299.40520 * 14 13 12
20 20 H 1.08997 * 109.62842 * 298.77716 * 19 14 13
21 21 H 0.97001 * 120.00161 * 0.02562 * 1 2 3
22 22 H 1.08997 * 109.60185 * 57.79956 * 11 9 7
23 23 H 1.09003 * 109.59744 * 178.27426 * 11 9 7
24 24 H 1.09001 * 109.57769 * 181.40355 * 12 11 9
25 25 H 1.09006 * 109.74751 * 61.04506 * 12 11 9
26 26 H 1.09008 * 109.36231 * 299.65409 * 13 12 11
27 27 H 1.09000 * 109.25914 * 179.97438 * 13 12 11
28 28 H 1.09004 * 109.36127 * 64.14617 * 15 14 13
29 29 H 1.08999 * 109.25918 * 304.47470 * 15 14 13
30 30 H 1.09004 * 109.57248 * 180.37623 * 16 15 14
31 31 H 1.08997 * 109.57705 * 59.98403 * 16 15 14
32 32 H 1.08997 * 109.60371 * 298.97055 * 17 16 15
33 33 H 1.08998 * 109.60389 * 178.48314 * 17 16 15
34 34 H 1.09003 * 109.40649 * 181.79782 * 18 17 16
35 35 H 1.08999 * 109.34816 * 61.99556 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4465 2.6527 0.7000
6 1 3.5467 1.4402 0.7002
7 6 2.0045 -1.1940 0.0005
8 1 1.4644 -2.1293 0.0005
9 6 3.5115 -1.1941 0.0011
10 9 3.9759 -0.5341 1.1440
11 6 4.0202 -0.4696 -1.2460
12 6 3.5389 -1.2298 -2.4861
13 6 4.0717 -2.6609 -2.4233
14 7 3.5784 -3.3317 -1.2100
15 6 4.0151 -4.7369 -1.2202
16 6 3.4233 -5.4799 -0.0229
17 6 3.9013 -4.8019 1.2653
18 6 3.4536 -3.3397 1.2447
19 6 4.0206 -2.6393 0.0054
20 1 5.1096 -2.6415 0.0523
21 1 -0.4850 0.8400 -0.0004
22 1 3.6257 0.5463 -1.2653
23 1 5.1098 -0.4410 -1.2333
24 1 3.9148 -0.7392 -3.3840
25 1 2.4492 -1.2464 -2.5081
26 1 5.1615 -2.6404 -2.4072
27 1 3.7334 -3.2094 -3.3023
28 1 5.1032 -4.7775 -1.1690
29 1 3.6787 -5.2112 -2.1421
30 1 3.7576 -6.5174 -0.0354
31 1 2.3350 -5.4441 -0.0723
32 1 4.9887 -4.8506 1.3224
33 1 3.4647 -5.3058 2.1276
34 1 3.8153 -2.8375 2.1419
35 1 2.3648 -3.2958 1.2191
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260681168.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:15:44
Heat of formation + Delta-G solvation = -64.326734 kcal
Electronic energy + Delta-G solvation = -17461.576839 eV
Core-core repulsion = 14793.757911 eV
Total energy + Delta-G solvation = -2667.818928 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.138 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-48.25333 -40.46715 -36.55216 -34.75108 -33.24750 -31.66829 -29.62204 -26.93349
-24.40943 -24.30387 -22.92614 -20.73087 -20.57783 -18.42417 -17.44788 -16.92435
-16.29491 -15.84514 -15.69057 -15.20140 -15.04266 -14.72475 -14.61052 -14.18138
-14.07185 -13.88706 -13.26039 -12.82712 -12.72081 -12.41336 -12.36726 -12.11324
-11.84413 -11.64456 -11.49661 -11.43868 -11.13490 -10.81020 -10.65604 -10.35348
-9.01750 -8.29335 -6.36011 1.25185 1.36204 1.49414 2.32833 2.94753
3.13246 3.77653 3.85588 3.94062 4.07635 4.17230 4.29800 4.29992
4.37350 4.44420 4.60436 4.70626 4.73319 4.83135 4.87558 4.94006
5.00939 5.10713 5.16148 5.16376 5.32010 5.35459 5.42924 5.49420
5.59965 5.68562 6.24209 6.37333 6.47403 6.76230 7.33151 8.85378
Molecular weight = 227.14amu
Principal moments of inertia in cm(-1)
A = 0.032496 B = 0.012200 C = 0.011194
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 861.427986 B = 2294.526705 C = 2500.709904
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.936 5.936
2 C 0.028 3.972
3 Si 0.919 3.081
4 H -0.270 1.270
5 H -0.306 1.306
6 H -0.238 1.238
7 C -0.496 4.496
8 H 0.060 0.940
9 C 0.195 3.805
10 F -0.245 7.245
11 C -0.145 4.145
12 C -0.103 4.103
13 C 0.062 3.938
14 N -0.533 5.533
15 C 0.054 3.946
16 C -0.114 4.114
17 C -0.114 4.114
18 C -0.109 4.109
19 C 0.098 3.902
20 H 0.033 0.967
21 H 0.264 0.736
22 H 0.042 0.958
23 H 0.067 0.933
24 H 0.084 0.916
25 H 0.056 0.944
26 H 0.040 0.960
27 H 0.091 0.909
28 H 0.038 0.962
29 H 0.087 0.913
30 H 0.093 0.907
31 H 0.053 0.947
32 H 0.067 0.933
33 H 0.072 0.928
34 H 0.051 0.949
35 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.997 -8.180 -3.660 14.186
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.576 5.576
2 C -0.170 4.170
3 Si 0.747 3.253
4 H -0.196 1.196
5 H -0.234 1.234
6 H -0.161 1.161
7 C -0.534 4.534
8 H 0.078 0.922
9 C 0.177 3.823
10 F -0.226 7.226
11 C -0.182 4.182
12 C -0.141 4.141
13 C -0.065 4.065
14 N -0.258 5.258
15 C -0.073 4.073
16 C -0.151 4.151
17 C -0.151 4.151
18 C -0.147 4.147
19 C -0.011 4.011
20 H 0.051 0.949
21 H 0.073 0.927
22 H 0.060 0.940
23 H 0.086 0.914
24 H 0.103 0.897
25 H 0.075 0.925
26 H 0.058 0.942
27 H 0.110 0.890
28 H 0.057 0.943
29 H 0.105 0.895
30 H 0.111 0.889
31 H 0.071 0.929
32 H 0.086 0.914
33 H 0.090 0.910
34 H 0.070 0.930
35 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 10.352 -8.061 -3.624 13.612
hybrid contribution 0.520 1.363 0.308 1.491
sum 10.872 -6.698 -3.316 13.193
Atomic orbital electron populations
1.70019 1.07717 1.27633 1.52193 1.25637 0.95260 1.02118 0.94010
0.86508 0.80476 0.80029 0.78293 1.19622 1.23450 1.16148 1.21141
0.89146 0.93654 1.49467 0.92165 1.19138 0.94008 0.89570 0.79627
1.92692 1.90835 1.83146 1.55972 1.22348 0.99671 0.98956 0.97254
1.21397 1.01575 0.95129 0.95967 1.22089 0.96993 0.94541 0.92907
1.62019 1.60327 1.02458 1.01034 1.22207 0.97577 0.87694 0.99855
1.21578 1.00643 0.99280 0.93616 1.21578 1.00791 0.94129 0.98631
1.21552 1.01142 0.96186 0.95790 1.21667 0.95016 0.92879 0.91504
0.94916 0.92730 0.93965 0.91439 0.89729 0.92512 0.94182 0.89044
0.94350 0.89465 0.88866 0.92852 0.91393 0.90977 0.93019 0.92910
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -58.64 13.96 21.45 0.30 -58.34 16
2 C 0.03 1.66 5.45 84.65 0.46 2.12 16
3 Si 0.92 46.40 23.99 68.60 1.65 48.05 16
4 H -0.27 -12.82 6.85 99.48 0.68 -12.14 16
5 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16
6 H -0.24 -11.74 5.47 99.48 0.54 -11.20 16
7 C -0.50 -27.78 6.56 25.60 0.17 -27.61 16
8 H 0.06 3.75 6.76 -2.91 -0.02 3.73 16
9 C 0.20 9.23 0.60 -11.48 -0.01 9.23 16
10 F -0.25 -12.39 13.42 44.97 0.60 -11.79 16
11 C -0.14 -6.10 4.77 30.64 0.15 -5.95 16
12 C -0.10 -3.82 5.86 30.61 0.18 -3.64 16
13 C 0.06 1.96 5.32 86.20 0.46 2.42 16
14 N -0.53 -19.13 4.35 -869.86 -3.79 -22.91 16
15 C 0.05 1.47 5.33 86.20 0.46 1.93 16
16 C -0.11 -2.99 6.10 30.61 0.19 -2.80 16
17 C -0.11 -3.26 6.02 30.65 0.18 -3.07 16
18 C -0.11 -4.23 4.89 30.65 0.15 -4.08 16
19 C 0.10 3.92 1.71 45.11 0.08 4.00 16
20 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16
21 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16
22 H 0.04 1.91 3.22 -2.39 -0.01 1.90 16
23 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16
24 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16
25 H 0.06 2.53 7.27 -2.38 -0.02 2.51 16
26 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16
27 H 0.09 2.46 8.03 -2.39 -0.02 2.44 16
28 H 0.04 0.94 8.14 -2.38 -0.02 0.93 16
29 H 0.09 2.07 8.03 -2.39 -0.02 2.05 16
30 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16
31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16
32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16
33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16
34 H 0.05 2.05 7.80 -2.39 -0.02 2.04 16
35 H 0.05 2.43 6.32 -2.39 -0.02 2.41 16
Total: -1.00 -65.61 256.79 2.10 -63.51
By element:
Atomic # 1 Polarization: 8.07 SS G_CDS: 0.87 Total: 8.94 kcal
Atomic # 6 Polarization: -29.92 SS G_CDS: 2.46 Total: -27.46 kcal
Atomic # 7 Polarization: -77.77 SS G_CDS: -3.49 Total: -81.26 kcal
Atomic # 9 Polarization: -12.39 SS G_CDS: 0.60 Total: -11.79 kcal
Atomic # 14 Polarization: 46.40 SS G_CDS: 1.65 Total: 48.05 kcal
Total: -65.61 2.10 -63.51 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260681168.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.813 kcal
(2) G-P(sol) polarization free energy of solvation -65.610 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.423 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.514 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.327 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds