Wall clock time and date at job start Mon Mar 30 2020 03:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00169 * 2 1 4 4 H 1.48506 * 109.47000 * 269.99838 * 3 2 1 5 5 H 1.48506 * 109.47012 * 29.99609 * 3 2 1 6 6 H 1.48500 * 109.47204 * 149.99355 * 3 2 1 7 7 C 1.37873 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99838 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00127 * 180.02562 * 7 2 1 10 10 F 1.39905 * 109.40446 * 60.00519 * 9 7 2 11 11 C 1.52939 * 109.40926 * 300.16054 * 9 7 2 12 12 C 1.53211 * 108.69462 * 298.10954 * 11 9 7 13 13 C 1.52834 * 108.77131 * 301.17458 * 12 11 9 14 14 N 1.47150 * 110.11243 * 59.85227 * 13 12 11 15 15 C 1.47153 * 109.27303 * 175.64074 * 14 13 12 16 16 C 1.52842 * 110.11545 * 184.34232 * 15 14 13 17 17 C 1.53219 * 108.82702 * 300.17804 * 16 15 14 18 18 C 1.52937 * 108.68410 * 58.72901 * 17 16 15 19 19 C 1.46704 * 111.52442 * 299.40520 * 14 13 12 20 20 H 1.08997 * 109.62842 * 298.77716 * 19 14 13 21 21 H 0.97001 * 120.00161 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.60185 * 57.79956 * 11 9 7 23 23 H 1.09003 * 109.59744 * 178.27426 * 11 9 7 24 24 H 1.09001 * 109.57769 * 181.40355 * 12 11 9 25 25 H 1.09006 * 109.74751 * 61.04506 * 12 11 9 26 26 H 1.09008 * 109.36231 * 299.65409 * 13 12 11 27 27 H 1.09000 * 109.25914 * 179.97438 * 13 12 11 28 28 H 1.09004 * 109.36127 * 64.14617 * 15 14 13 29 29 H 1.08999 * 109.25918 * 304.47470 * 15 14 13 30 30 H 1.09004 * 109.57248 * 180.37623 * 16 15 14 31 31 H 1.08997 * 109.57705 * 59.98403 * 16 15 14 32 32 H 1.08997 * 109.60371 * 298.97055 * 17 16 15 33 33 H 1.08998 * 109.60389 * 178.48314 * 17 16 15 34 34 H 1.09003 * 109.40649 * 181.79782 * 18 17 16 35 35 H 1.08999 * 109.34816 * 61.99556 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 9 3.9759 -0.5341 1.1440 11 6 4.0202 -0.4696 -1.2460 12 6 3.5389 -1.2298 -2.4861 13 6 4.0717 -2.6609 -2.4233 14 7 3.5784 -3.3317 -1.2100 15 6 4.0151 -4.7369 -1.2202 16 6 3.4233 -5.4799 -0.0229 17 6 3.9013 -4.8019 1.2653 18 6 3.4536 -3.3397 1.2447 19 6 4.0206 -2.6393 0.0054 20 1 5.1096 -2.6415 0.0523 21 1 -0.4850 0.8400 -0.0004 22 1 3.6257 0.5463 -1.2653 23 1 5.1098 -0.4410 -1.2333 24 1 3.9148 -0.7392 -3.3840 25 1 2.4492 -1.2464 -2.5081 26 1 5.1615 -2.6404 -2.4072 27 1 3.7334 -3.2094 -3.3023 28 1 5.1032 -4.7775 -1.1690 29 1 3.6787 -5.2112 -2.1421 30 1 3.7576 -6.5174 -0.0354 31 1 2.3350 -5.4441 -0.0723 32 1 4.9887 -4.8506 1.3224 33 1 3.4647 -5.3058 2.1276 34 1 3.8153 -2.8375 2.1419 35 1 2.3648 -3.2958 1.2191 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260681168.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:44 Heat of formation + Delta-G solvation = -64.326734 kcal Electronic energy + Delta-G solvation = -17461.576839 eV Core-core repulsion = 14793.757911 eV Total energy + Delta-G solvation = -2667.818928 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.25333 -40.46715 -36.55216 -34.75108 -33.24750 -31.66829 -29.62204 -26.93349 -24.40943 -24.30387 -22.92614 -20.73087 -20.57783 -18.42417 -17.44788 -16.92435 -16.29491 -15.84514 -15.69057 -15.20140 -15.04266 -14.72475 -14.61052 -14.18138 -14.07185 -13.88706 -13.26039 -12.82712 -12.72081 -12.41336 -12.36726 -12.11324 -11.84413 -11.64456 -11.49661 -11.43868 -11.13490 -10.81020 -10.65604 -10.35348 -9.01750 -8.29335 -6.36011 1.25185 1.36204 1.49414 2.32833 2.94753 3.13246 3.77653 3.85588 3.94062 4.07635 4.17230 4.29800 4.29992 4.37350 4.44420 4.60436 4.70626 4.73319 4.83135 4.87558 4.94006 5.00939 5.10713 5.16148 5.16376 5.32010 5.35459 5.42924 5.49420 5.59965 5.68562 6.24209 6.37333 6.47403 6.76230 7.33151 8.85378 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.032496 B = 0.012200 C = 0.011194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.427986 B = 2294.526705 C = 2500.709904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.028 3.972 3 Si 0.919 3.081 4 H -0.270 1.270 5 H -0.306 1.306 6 H -0.238 1.238 7 C -0.496 4.496 8 H 0.060 0.940 9 C 0.195 3.805 10 F -0.245 7.245 11 C -0.145 4.145 12 C -0.103 4.103 13 C 0.062 3.938 14 N -0.533 5.533 15 C 0.054 3.946 16 C -0.114 4.114 17 C -0.114 4.114 18 C -0.109 4.109 19 C 0.098 3.902 20 H 0.033 0.967 21 H 0.264 0.736 22 H 0.042 0.958 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.056 0.944 26 H 0.040 0.960 27 H 0.091 0.909 28 H 0.038 0.962 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.997 -8.180 -3.660 14.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.170 4.170 3 Si 0.747 3.253 4 H -0.196 1.196 5 H -0.234 1.234 6 H -0.161 1.161 7 C -0.534 4.534 8 H 0.078 0.922 9 C 0.177 3.823 10 F -0.226 7.226 11 C -0.182 4.182 12 C -0.141 4.141 13 C -0.065 4.065 14 N -0.258 5.258 15 C -0.073 4.073 16 C -0.151 4.151 17 C -0.151 4.151 18 C -0.147 4.147 19 C -0.011 4.011 20 H 0.051 0.949 21 H 0.073 0.927 22 H 0.060 0.940 23 H 0.086 0.914 24 H 0.103 0.897 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.110 0.890 28 H 0.057 0.943 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.352 -8.061 -3.624 13.612 hybrid contribution 0.520 1.363 0.308 1.491 sum 10.872 -6.698 -3.316 13.193 Atomic orbital electron populations 1.70019 1.07717 1.27633 1.52193 1.25637 0.95260 1.02118 0.94010 0.86508 0.80476 0.80029 0.78293 1.19622 1.23450 1.16148 1.21141 0.89146 0.93654 1.49467 0.92165 1.19138 0.94008 0.89570 0.79627 1.92692 1.90835 1.83146 1.55972 1.22348 0.99671 0.98956 0.97254 1.21397 1.01575 0.95129 0.95967 1.22089 0.96993 0.94541 0.92907 1.62019 1.60327 1.02458 1.01034 1.22207 0.97577 0.87694 0.99855 1.21578 1.00643 0.99280 0.93616 1.21578 1.00791 0.94129 0.98631 1.21552 1.01142 0.96186 0.95790 1.21667 0.95016 0.92879 0.91504 0.94916 0.92730 0.93965 0.91439 0.89729 0.92512 0.94182 0.89044 0.94350 0.89465 0.88866 0.92852 0.91393 0.90977 0.93019 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.64 13.96 21.45 0.30 -58.34 16 2 C 0.03 1.66 5.45 84.65 0.46 2.12 16 3 Si 0.92 46.40 23.99 68.60 1.65 48.05 16 4 H -0.27 -12.82 6.85 99.48 0.68 -12.14 16 5 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 6 H -0.24 -11.74 5.47 99.48 0.54 -11.20 16 7 C -0.50 -27.78 6.56 25.60 0.17 -27.61 16 8 H 0.06 3.75 6.76 -2.91 -0.02 3.73 16 9 C 0.20 9.23 0.60 -11.48 -0.01 9.23 16 10 F -0.25 -12.39 13.42 44.97 0.60 -11.79 16 11 C -0.14 -6.10 4.77 30.64 0.15 -5.95 16 12 C -0.10 -3.82 5.86 30.61 0.18 -3.64 16 13 C 0.06 1.96 5.32 86.20 0.46 2.42 16 14 N -0.53 -19.13 4.35 -869.86 -3.79 -22.91 16 15 C 0.05 1.47 5.33 86.20 0.46 1.93 16 16 C -0.11 -2.99 6.10 30.61 0.19 -2.80 16 17 C -0.11 -3.26 6.02 30.65 0.18 -3.07 16 18 C -0.11 -4.23 4.89 30.65 0.15 -4.08 16 19 C 0.10 3.92 1.71 45.11 0.08 4.00 16 20 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 21 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 22 H 0.04 1.91 3.22 -2.39 -0.01 1.90 16 23 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.06 2.53 7.27 -2.38 -0.02 2.51 16 26 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.09 2.46 8.03 -2.39 -0.02 2.44 16 28 H 0.04 0.94 8.14 -2.38 -0.02 0.93 16 29 H 0.09 2.07 8.03 -2.39 -0.02 2.05 16 30 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.05 2.05 7.80 -2.39 -0.02 2.04 16 35 H 0.05 2.43 6.32 -2.39 -0.02 2.41 16 Total: -1.00 -65.61 256.79 2.10 -63.51 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 0.87 Total: 8.94 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: 2.46 Total: -27.46 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -3.49 Total: -81.26 kcal Atomic # 9 Polarization: -12.39 SS G_CDS: 0.60 Total: -11.79 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.65 Total: 48.05 kcal Total: -65.61 2.10 -63.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260681168.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.813 kcal (2) G-P(sol) polarization free energy of solvation -65.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds