Wall clock time and date at job start Mon Mar 30 2020 03:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99827 * 2 1 4 4 H 1.48490 * 109.47182 * 264.70299 * 3 2 1 5 5 H 1.48501 * 109.46900 * 24.70413 * 3 2 1 6 6 H 1.48500 * 109.47148 * 144.69953 * 3 2 1 7 7 C 1.37879 * 120.00593 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99727 * 355.13405 * 7 2 1 9 9 C 1.50693 * 120.00315 * 175.13153 * 7 2 1 10 10 F 1.39899 * 109.41023 * 327.09047 * 9 7 2 11 11 C 1.52935 * 109.40719 * 86.93625 * 9 7 2 12 12 C 1.53213 * 108.70136 * 62.04570 * 11 9 7 13 13 C 1.52840 * 108.82678 * 58.71358 * 12 11 9 14 14 N 1.47161 * 110.10104 * 300.17643 * 13 12 11 15 15 C 1.47147 * 109.27314 * 184.39395 * 14 13 12 16 16 C 1.52842 * 110.11316 * 175.64176 * 15 14 13 17 17 C 1.53216 * 108.81772 * 59.82957 * 16 15 14 18 18 C 1.52940 * 108.69614 * 301.27218 * 17 16 15 19 19 C 1.46706 * 111.52286 * 60.61736 * 14 13 12 20 20 H 1.09004 * 109.51372 * 61.13885 * 19 14 13 21 21 H 0.96998 * 120.00031 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.60079 * 302.27761 * 11 9 7 23 23 H 1.09005 * 109.72893 * 181.88507 * 11 9 7 24 24 H 1.09001 * 109.58349 * 298.90573 * 12 11 9 25 25 H 1.09004 * 109.68879 * 178.57671 * 12 11 9 26 26 H 1.09000 * 109.37106 * 179.97438 * 13 12 11 27 27 H 1.08993 * 109.36886 * 60.37144 * 13 12 11 28 28 H 1.09006 * 109.36593 * 295.83650 * 15 14 13 29 29 H 1.08997 * 109.36313 * 55.44686 * 15 14 13 30 30 H 1.09008 * 109.57580 * 300.02958 * 16 15 14 31 31 H 1.08995 * 109.57881 * 179.63108 * 16 15 14 32 32 H 1.09000 * 109.60178 * 181.51225 * 17 16 15 33 33 H 1.08994 * 109.73390 * 61.10823 * 17 16 15 34 34 H 1.09010 * 109.40552 * 297.96302 * 18 17 16 35 35 H 1.08997 * 109.34747 * 178.16030 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6085 1.9819 -1.3940 5 1 1.3950 2.6824 0.5851 6 1 3.4862 1.4752 0.8090 7 6 2.0046 -1.1940 0.0005 8 1 1.4676 -2.1277 0.0803 9 6 3.5075 -1.1963 -0.1102 10 9 3.9167 -0.1211 -0.9062 11 6 4.1200 -1.0583 1.2843 12 6 3.7005 -2.2672 2.1269 13 6 4.1820 -3.5419 1.4347 14 7 3.5868 -3.6443 0.0927 15 6 3.9773 -4.9262 -0.5153 16 6 3.2823 -5.1009 -1.8653 17 6 3.6946 -3.9479 -2.7863 18 6 3.2973 -2.6269 -2.1259 19 6 3.9686 -2.5084 -0.7536 20 1 5.0516 -2.4931 -0.8757 21 1 -0.4850 0.8400 0.0004 22 1 3.7592 -0.1428 1.7532 23 1 5.2069 -1.0258 1.2072 24 1 2.6146 -2.2893 2.2189 25 1 4.1496 -2.1978 3.1178 26 1 3.8884 -4.4082 2.0274 27 1 5.2682 -3.5177 1.3474 28 1 5.0576 -4.9434 -0.6600 29 1 3.6903 -5.7427 0.1472 30 1 2.2015 -5.0872 -1.7242 31 1 3.5826 -6.0493 -2.3106 32 1 3.1848 -4.0453 -3.7448 33 1 4.7732 -3.9689 -2.9420 34 1 2.2146 -2.5944 -2.0033 35 1 3.6153 -1.7974 -2.7575 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260681174.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:48 Heat of formation + Delta-G solvation = -56.344531 kcal Electronic energy + Delta-G solvation = -17441.738082 eV Core-core repulsion = 14774.265288 eV Total energy + Delta-G solvation = -2667.472794 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -46.71512 -38.99576 -34.97296 -32.81041 -31.50137 -30.18656 -27.99944 -25.05314 -22.93092 -22.75085 -21.42925 -19.18440 -18.90410 -16.54484 -15.72034 -15.20472 -14.58008 -14.35034 -14.17702 -13.73488 -13.26431 -13.13897 -12.95292 -12.59422 -12.21051 -12.17387 -11.81001 -11.38448 -11.04104 -10.80439 -10.58967 -10.37412 -10.32156 -10.07684 -9.98533 -9.89068 -9.49689 -8.99857 -8.74365 -8.41381 -7.64974 -6.05589 -4.10792 3.46697 3.54945 3.65094 4.35803 4.53203 5.14101 5.22701 5.31782 5.37203 5.52325 5.65428 5.68106 5.81401 5.86087 5.90491 5.96968 6.06303 6.14651 6.16877 6.27836 6.32595 6.45008 6.53054 6.54843 6.62977 6.75546 7.00845 7.08653 7.15352 7.27050 7.50913 7.68277 7.84726 8.51400 9.04682 9.55029 11.04427 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.030713 B = 0.012484 C = 0.011110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.461472 B = 2242.310095 C = 2519.735020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.072 3.928 3 Si 0.922 3.078 4 H -0.289 1.289 5 H -0.322 1.322 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.101 0.899 9 C 0.211 3.789 10 F -0.222 7.222 11 C -0.138 4.138 12 C -0.104 4.104 13 C 0.059 3.941 14 N -0.507 5.507 15 C 0.056 3.944 16 C -0.115 4.115 17 C -0.121 4.121 18 C -0.108 4.108 19 C 0.090 3.910 20 H 0.020 0.980 21 H 0.264 0.736 22 H 0.069 0.931 23 H 0.036 0.964 24 H 0.091 0.909 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.019 0.981 28 H 0.021 0.979 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.355 -7.683 -0.333 11.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.131 4.131 3 Si 0.757 3.243 4 H -0.216 1.216 5 H -0.253 1.253 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.119 0.881 9 C 0.192 3.808 10 F -0.204 7.204 11 C -0.176 4.176 12 C -0.142 4.142 13 C -0.069 4.069 14 N -0.232 5.232 15 C -0.072 4.072 16 C -0.153 4.153 17 C -0.159 4.159 18 C -0.145 4.145 19 C -0.019 4.019 20 H 0.038 0.962 21 H 0.074 0.926 22 H 0.088 0.912 23 H 0.054 0.946 24 H 0.110 0.890 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.113 0.887 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.677 -7.547 -0.319 10.770 hybrid contribution 1.445 1.031 -0.132 1.780 sum 9.122 -6.515 -0.451 11.219 Atomic orbital electron populations 1.69919 1.06305 1.27193 1.49171 1.25039 0.94954 0.99513 0.93588 0.86428 0.77960 0.81849 0.78086 1.21566 1.25323 1.20217 1.21051 0.87162 0.95758 1.51804 0.88091 1.19080 0.96911 0.79617 0.85165 1.92193 1.92036 1.58732 1.77392 1.22340 0.97635 0.99462 0.98203 1.21402 1.03703 0.92797 0.96263 1.22078 0.95383 0.98935 0.90520 1.62052 1.58566 1.00749 1.01828 1.22073 0.96608 0.92402 0.96132 1.21555 1.01714 0.97428 0.94585 1.21617 0.99842 0.96095 0.98326 1.21595 1.03755 0.95397 0.93795 1.21927 0.94893 0.91463 0.93597 0.96190 0.92649 0.91195 0.94555 0.89010 0.92831 0.91459 0.96294 0.96055 0.91339 0.90739 0.92439 0.92279 0.93301 0.88717 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.96 55.43 0.77 -26.08 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.92 24.08 24.56 -169.99 -4.18 19.91 16 4 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 5 H -0.32 -8.46 7.11 56.52 0.40 -8.06 16 6 H -0.28 -6.93 5.50 56.52 0.31 -6.62 16 7 C -0.52 -14.02 5.92 -34.44 -0.20 -14.22 16 8 H 0.10 2.95 7.66 -52.48 -0.40 2.55 16 9 C 0.21 4.98 0.60 -91.69 -0.06 4.93 16 10 F -0.22 -5.61 11.92 2.25 0.03 -5.58 16 11 C -0.14 -2.96 4.94 -26.65 -0.13 -3.09 16 12 C -0.10 -1.94 5.87 -26.70 -0.16 -2.10 16 13 C 0.06 1.00 5.33 -3.76 -0.02 0.98 16 14 N -0.51 -9.51 4.16 -226.29 -0.94 -10.45 16 15 C 0.06 0.86 5.33 -3.77 -0.02 0.84 16 16 C -0.12 -1.69 6.11 -26.70 -0.16 -1.85 16 17 C -0.12 -1.91 6.02 -26.65 -0.16 -2.07 16 18 C -0.11 -2.14 4.90 -26.64 -0.13 -2.27 16 19 C 0.09 1.86 1.73 -67.58 -0.12 1.74 16 20 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 21 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 22 H 0.07 1.59 5.89 -51.93 -0.31 1.28 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.09 1.94 7.27 -51.93 -0.38 1.56 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 1.01 8.03 -51.93 -0.42 0.59 16 27 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.95 8.03 -51.93 -0.42 0.53 16 30 H 0.07 1.19 8.14 -51.92 -0.42 0.76 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 2.15 6.90 -51.92 -0.36 1.79 16 35 H 0.06 1.22 7.81 -51.93 -0.41 0.82 16 LS Contribution 259.70 15.07 3.91 3.91 Total: -1.00 -29.39 259.70 -7.37 -36.77 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -5.71 Total: -3.33 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -1.26 Total: -15.14 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: -0.17 Total: -36.54 kcal Atomic # 9 Polarization: -5.61 SS G_CDS: 0.03 Total: -5.58 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -4.18 Total: 19.91 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.39 -7.37 -36.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260681174.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.578 kcal (2) G-P(sol) polarization free energy of solvation -29.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds