Wall clock time and date at job start Mon Mar 30 2020 03:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99827 * 2 1 4 4 H 1.48490 * 109.47182 * 264.70299 * 3 2 1 5 5 H 1.48501 * 109.46900 * 24.70413 * 3 2 1 6 6 H 1.48500 * 109.47148 * 144.69953 * 3 2 1 7 7 C 1.37879 * 120.00593 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99727 * 355.13405 * 7 2 1 9 9 C 1.50693 * 120.00315 * 175.13153 * 7 2 1 10 10 F 1.39899 * 109.41023 * 327.09047 * 9 7 2 11 11 C 1.52935 * 109.40719 * 86.93625 * 9 7 2 12 12 C 1.53213 * 108.70136 * 62.04570 * 11 9 7 13 13 C 1.52840 * 108.82678 * 58.71358 * 12 11 9 14 14 N 1.47161 * 110.10104 * 300.17643 * 13 12 11 15 15 C 1.47147 * 109.27314 * 184.39395 * 14 13 12 16 16 C 1.52842 * 110.11316 * 175.64176 * 15 14 13 17 17 C 1.53216 * 108.81772 * 59.82957 * 16 15 14 18 18 C 1.52940 * 108.69614 * 301.27218 * 17 16 15 19 19 C 1.46706 * 111.52286 * 60.61736 * 14 13 12 20 20 H 1.09004 * 109.51372 * 61.13885 * 19 14 13 21 21 H 0.96998 * 120.00031 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.60079 * 302.27761 * 11 9 7 23 23 H 1.09005 * 109.72893 * 181.88507 * 11 9 7 24 24 H 1.09001 * 109.58349 * 298.90573 * 12 11 9 25 25 H 1.09004 * 109.68879 * 178.57671 * 12 11 9 26 26 H 1.09000 * 109.37106 * 179.97438 * 13 12 11 27 27 H 1.08993 * 109.36886 * 60.37144 * 13 12 11 28 28 H 1.09006 * 109.36593 * 295.83650 * 15 14 13 29 29 H 1.08997 * 109.36313 * 55.44686 * 15 14 13 30 30 H 1.09008 * 109.57580 * 300.02958 * 16 15 14 31 31 H 1.08995 * 109.57881 * 179.63108 * 16 15 14 32 32 H 1.09000 * 109.60178 * 181.51225 * 17 16 15 33 33 H 1.08994 * 109.73390 * 61.10823 * 17 16 15 34 34 H 1.09010 * 109.40552 * 297.96302 * 18 17 16 35 35 H 1.08997 * 109.34747 * 178.16030 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6085 1.9819 -1.3940 5 1 1.3950 2.6824 0.5851 6 1 3.4862 1.4752 0.8090 7 6 2.0046 -1.1940 0.0005 8 1 1.4676 -2.1277 0.0803 9 6 3.5075 -1.1963 -0.1102 10 9 3.9167 -0.1211 -0.9062 11 6 4.1200 -1.0583 1.2843 12 6 3.7005 -2.2672 2.1269 13 6 4.1820 -3.5419 1.4347 14 7 3.5868 -3.6443 0.0927 15 6 3.9773 -4.9262 -0.5153 16 6 3.2823 -5.1009 -1.8653 17 6 3.6946 -3.9479 -2.7863 18 6 3.2973 -2.6269 -2.1259 19 6 3.9686 -2.5084 -0.7536 20 1 5.0516 -2.4931 -0.8757 21 1 -0.4850 0.8400 0.0004 22 1 3.7592 -0.1428 1.7532 23 1 5.2069 -1.0258 1.2072 24 1 2.6146 -2.2893 2.2189 25 1 4.1496 -2.1978 3.1178 26 1 3.8884 -4.4082 2.0274 27 1 5.2682 -3.5177 1.3474 28 1 5.0576 -4.9434 -0.6600 29 1 3.6903 -5.7427 0.1472 30 1 2.2015 -5.0872 -1.7242 31 1 3.5826 -6.0493 -2.3106 32 1 3.1848 -4.0453 -3.7448 33 1 4.7732 -3.9689 -2.9420 34 1 2.2146 -2.5944 -2.0033 35 1 3.6153 -1.7974 -2.7575 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260681174.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:47 Heat of formation + Delta-G solvation = -75.525818 kcal Electronic energy + Delta-G solvation = -17442.569845 eV Core-core repulsion = 14774.265288 eV Total energy + Delta-G solvation = -2668.304557 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.68031 -40.45087 -36.44071 -34.74320 -33.25752 -31.62012 -29.58278 -27.01950 -24.32199 -24.25956 -22.95624 -20.70888 -20.55002 -18.52903 -17.48387 -16.97993 -16.23561 -15.98089 -15.72381 -15.17738 -14.95436 -14.76520 -14.59528 -14.25265 -14.08664 -13.80125 -13.31961 -12.84020 -12.71287 -12.54719 -12.31487 -12.09778 -11.85594 -11.68283 -11.48439 -11.44541 -11.22407 -10.94622 -10.64793 -10.37528 -9.03120 -8.29001 -6.33207 1.35031 1.38431 1.54490 2.35837 2.94324 3.09341 3.80837 3.89164 3.94643 4.07770 4.21770 4.29325 4.33366 4.39469 4.45268 4.62738 4.72401 4.74391 4.85340 4.88533 4.96601 5.04466 5.11896 5.16460 5.23168 5.25703 5.34521 5.41859 5.49919 5.62437 5.69759 6.24207 6.36832 6.46132 6.77542 7.33206 8.84900 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.030713 B = 0.012484 C = 0.011110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.461472 B = 2242.310095 C = 2519.735020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.020 3.980 3 Si 0.966 3.034 4 H -0.296 1.296 5 H -0.325 1.325 6 H -0.258 1.258 7 C -0.496 4.496 8 H 0.069 0.931 9 C 0.196 3.804 10 F -0.232 7.232 11 C -0.139 4.139 12 C -0.101 4.101 13 C 0.059 3.941 14 N -0.533 5.533 15 C 0.055 3.945 16 C -0.113 4.113 17 C -0.114 4.114 18 C -0.108 4.108 19 C 0.097 3.903 20 H 0.033 0.967 21 H 0.263 0.737 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.948 -9.350 -0.030 14.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.178 4.178 3 Si 0.800 3.200 4 H -0.224 1.224 5 H -0.256 1.256 6 H -0.184 1.184 7 C -0.534 4.534 8 H 0.088 0.912 9 C 0.178 3.822 10 F -0.214 7.214 11 C -0.177 4.177 12 C -0.139 4.139 13 C -0.068 4.068 14 N -0.259 5.259 15 C -0.073 4.073 16 C -0.151 4.151 17 C -0.152 4.152 18 C -0.146 4.146 19 C -0.013 4.013 20 H 0.050 0.950 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.105 0.895 26 H 0.110 0.890 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.294 -9.230 -0.007 13.826 hybrid contribution 0.624 1.474 -0.238 1.619 sum 10.919 -7.755 -0.245 13.395 Atomic orbital electron populations 1.70025 1.07621 1.27640 1.52153 1.25656 0.95446 1.02290 0.94406 0.85693 0.77574 0.78999 0.77720 1.22379 1.25635 1.18357 1.21110 0.89322 0.93991 1.48967 0.91244 1.19332 0.94865 0.81161 0.86886 1.92157 1.91849 1.59454 1.77899 1.22300 0.98851 0.99975 0.96569 1.21383 1.01797 0.92814 0.97871 1.22134 0.96328 0.98698 0.89671 1.62019 1.59821 1.01451 1.02612 1.22193 0.97578 0.90983 0.96511 1.21571 1.00475 0.98535 0.94491 1.21575 1.01044 0.93890 0.98656 1.21518 1.01049 0.97749 0.94240 1.21736 0.95273 0.90611 0.93636 0.94966 0.92798 0.93077 0.92156 0.92417 0.89474 0.89022 0.94361 0.94412 0.89368 0.92809 0.88899 0.91159 0.91437 0.92789 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.69 13.96 21.45 0.30 -58.39 16 2 C 0.02 1.20 5.47 84.66 0.46 1.66 16 3 Si 0.97 50.30 24.56 68.60 1.69 51.98 16 4 H -0.30 -15.65 7.11 99.48 0.71 -14.94 16 5 H -0.33 -16.92 7.11 99.48 0.71 -16.21 16 6 H -0.26 -12.58 5.50 99.48 0.55 -12.03 16 7 C -0.50 -27.42 5.92 25.60 0.15 -27.27 16 8 H 0.07 4.24 7.66 -2.91 -0.02 4.22 16 9 C 0.20 9.16 0.60 -11.49 -0.01 9.15 16 10 F -0.23 -11.59 11.92 44.97 0.54 -11.05 16 11 C -0.14 -5.69 4.94 30.64 0.15 -5.54 16 12 C -0.10 -3.55 5.87 30.61 0.18 -3.37 16 13 C 0.06 1.80 5.33 86.20 0.46 2.26 16 14 N -0.53 -18.81 4.16 -869.84 -3.62 -22.43 16 15 C 0.05 1.47 5.33 86.20 0.46 1.93 16 16 C -0.11 -2.99 6.11 30.61 0.19 -2.80 16 17 C -0.11 -3.32 6.02 30.65 0.18 -3.14 16 18 C -0.11 -4.24 4.90 30.65 0.15 -4.09 16 19 C 0.10 3.83 1.73 45.11 0.08 3.91 16 20 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 21 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 22 H 0.05 2.25 5.89 -2.38 -0.01 2.24 16 23 H 0.06 2.18 8.14 -2.38 -0.02 2.17 16 24 H 0.06 2.42 7.27 -2.39 -0.02 2.40 16 25 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 26 H 0.09 2.37 8.03 -2.39 -0.02 2.35 16 27 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.09 2.05 8.03 -2.39 -0.02 2.03 16 30 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.05 2.54 6.90 -2.38 -0.02 2.52 16 35 H 0.05 1.94 7.81 -2.39 -0.02 1.92 16 Total: -1.00 -65.21 259.70 2.24 -62.97 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: 0.89 Total: 4.21 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 2.46 Total: -27.30 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -3.32 Total: -80.82 kcal Atomic # 9 Polarization: -11.59 SS G_CDS: 0.54 Total: -11.05 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 1.69 Total: 51.98 kcal Total: -65.21 2.24 -62.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260681174.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.559 kcal (2) G-P(sol) polarization free energy of solvation -65.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds