Wall clock time and date at job start Mon Mar 30 2020 03:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48806 * 111.18798 * 2 1 4 4 C 1.54935 * 103.35098 * 159.50343 * 3 2 1 5 5 C 1.54588 * 102.92060 * 322.69064 * 4 3 2 6 6 C 1.47901 * 110.99708 * 117.33682 * 2 1 3 7 7 H 1.08996 * 109.91830 * 333.70278 * 6 2 1 8 8 N 1.46500 * 109.91967 * 94.80364 * 6 2 1 9 9 C 1.34772 * 120.00121 * 253.19864 * 8 6 2 10 10 O 1.21583 * 119.99720 * 359.97438 * 9 8 6 11 11 N 1.34780 * 120.00305 * 179.97438 * 9 8 6 12 12 C 1.46491 * 120.00091 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.46957 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 H 1.08996 * 109.46938 * 302.66384 * 1 2 3 22 22 H 1.08999 * 109.47035 * 62.66350 * 1 2 3 23 23 H 1.08999 * 109.47179 * 182.66303 * 1 2 3 24 24 H 1.09005 * 110.51686 * 41.06774 * 3 2 1 25 25 H 1.09000 * 110.84064 * 278.09505 * 3 2 1 26 26 H 1.09001 * 110.72412 * 204.33308 * 4 3 2 27 27 H 1.08999 * 110.87304 * 81.12034 * 4 3 2 28 28 H 1.09003 * 110.31155 * 263.03417 * 5 4 3 29 29 H 1.09009 * 110.39196 * 140.91421 * 5 4 3 30 30 H 0.97005 * 120.00110 * 73.18746 * 8 6 2 31 31 H 0.97003 * 119.99349 * 359.97438 * 11 9 8 32 32 H 1.09004 * 109.47166 * 60.00164 * 12 11 9 33 33 H 1.08994 * 109.47507 * 299.99870 * 12 11 9 34 34 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0069 1.3875 0.0000 4 6 3.4528 1.2107 0.5278 5 6 3.2974 0.1059 1.5979 6 6 1.9990 -0.6341 1.2266 7 1 1.2743 -0.5412 2.0355 8 7 2.2855 -2.0483 0.9735 9 6 1.4825 -3.0010 1.4873 10 8 0.5206 -2.6867 2.1612 11 7 1.7458 -4.3021 1.2541 12 6 0.8733 -5.3376 1.8130 13 6 1.3828 -6.6966 1.4072 14 1 2.2684 -6.7805 0.7946 15 6 0.7221 -7.8331 1.8232 16 7 -0.3560 -7.7309 2.5695 17 14 1.3582 -9.5177 1.3267 18 1 2.5769 -9.3607 0.4929 19 1 1.6894 -10.3005 2.5445 20 1 0.3141 -10.2315 0.5483 21 1 -0.3633 0.5546 0.8651 22 1 -0.3633 0.4719 -0.9129 23 1 -0.3633 -1.0265 0.0477 24 1 1.4273 2.0219 0.6707 25 1 2.0133 1.8009 -1.0085 26 1 3.8149 2.1352 0.9776 27 1 4.1201 0.8841 -0.2697 28 1 3.2097 0.5495 2.5898 29 1 4.1456 -0.5779 1.5638 30 1 3.0531 -2.2991 0.4361 31 1 2.5131 -4.5528 0.7161 32 1 -0.1400 -5.2021 1.4346 33 1 0.8684 -5.2608 2.9002 34 1 -0.8210 -8.5304 2.8619 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260715130.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:01 Heat of formation + Delta-G solvation = -27.084591 kcal Electronic energy + Delta-G solvation = -15805.167567 eV Core-core repulsion = 13158.883541 eV Total energy + Delta-G solvation = -2646.284026 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.73296 -38.13577 -34.12103 -33.35355 -32.19104 -32.11230 -28.15695 -26.62565 -25.42223 -22.65221 -21.25830 -20.67816 -20.14130 -18.09785 -16.52303 -16.07421 -15.56541 -14.96001 -14.77257 -14.27115 -13.86977 -13.71151 -13.38597 -13.08792 -12.58024 -12.02092 -11.94178 -11.85095 -11.52236 -11.43135 -11.15679 -10.89678 -10.88412 -10.81864 -10.26890 -9.41463 -9.31656 -8.88818 -8.69302 -8.41732 -7.72113 -6.12447 -4.18550 3.26353 3.28767 3.34248 3.38387 3.89878 4.25472 4.36777 4.53456 4.62280 4.85830 5.17547 5.23839 5.25845 5.33719 5.49509 5.51976 5.61683 5.71051 5.76257 5.91202 6.02149 6.11430 6.73000 6.89600 7.08843 7.23170 7.56625 7.61083 7.61648 7.96688 8.10276 8.80984 9.00229 9.37975 9.52494 10.97947 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.057968 B = 0.004992 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.911929 B = 5607.818055 C = 5785.008261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.537 5.537 3 C 0.038 3.962 4 C -0.123 4.123 5 C -0.136 4.136 6 C 0.304 3.696 7 H 0.087 0.913 8 N -0.737 5.737 9 C 0.695 3.305 10 O -0.606 6.606 11 N -0.728 5.728 12 C 0.267 3.733 13 C -0.540 4.540 14 H 0.063 0.937 15 C 0.063 3.937 16 N -0.886 5.886 17 Si 0.904 3.096 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 H 0.028 0.972 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.045 0.955 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.392 0.608 31 H 0.387 0.613 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.670 16.195 -4.903 18.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.264 5.264 3 C -0.090 4.090 4 C -0.161 4.161 5 C -0.176 4.176 6 C 0.109 3.891 7 H 0.104 0.896 8 N -0.393 5.393 9 C 0.395 3.605 10 O -0.485 6.485 11 N -0.380 5.380 12 C 0.146 3.854 13 C -0.578 4.578 14 H 0.081 0.919 15 C -0.141 4.141 16 N -0.524 5.524 17 Si 0.731 3.269 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.208 1.208 21 H 0.046 0.954 22 H 0.083 0.917 23 H 0.093 0.907 24 H 0.064 0.936 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.226 0.774 31 H 0.219 0.781 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.741 16.014 -4.612 17.976 hybrid contribution 0.585 -0.814 -0.077 1.005 sum 7.326 15.200 -4.689 17.513 Atomic orbital electron populations 1.22422 0.86940 1.02967 1.00127 1.64348 1.08857 1.14402 1.38785 1.23196 0.94939 0.89761 1.01128 1.22479 0.96682 0.98488 0.98469 1.22675 0.97744 0.97958 0.99209 1.21832 0.95841 0.80389 0.91047 0.89558 1.45156 1.31510 1.04655 1.58014 1.16183 0.82515 0.81460 0.80386 1.90847 1.30755 1.81761 1.45181 1.45715 1.32455 1.04105 1.55752 1.18970 0.89229 0.83092 0.94151 1.21278 1.12571 0.90446 1.33553 0.91895 1.24948 0.94791 0.99515 0.94807 1.69995 1.17965 1.29476 1.34944 0.86359 0.78798 0.83408 0.78311 1.19659 1.20841 1.20827 0.95366 0.91701 0.90684 0.93634 0.90046 0.90974 0.90626 0.90580 0.90161 0.77418 0.78129 0.95805 0.95795 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.41 60.07 0.57 0.90 16 2 N -0.54 -7.12 5.42 -234.28 -1.27 -8.39 16 3 C 0.04 0.38 6.58 -1.75 -0.01 0.36 16 4 C -0.12 -1.05 7.06 -24.88 -0.18 -1.23 16 5 C -0.14 -1.43 6.70 -25.38 -0.17 -1.60 16 6 C 0.30 4.34 3.18 -125.58 -0.40 3.94 16 7 H 0.09 1.47 6.65 -51.93 -0.35 1.12 16 8 N -0.74 -11.80 5.11 -60.61 -0.31 -12.11 16 9 C 0.70 14.81 8.57 -86.92 -0.74 14.07 16 10 O -0.61 -15.36 15.74 5.29 0.08 -15.28 16 11 N -0.73 -16.08 5.55 -66.42 -0.37 -16.45 16 12 C 0.27 7.29 5.43 -5.20 -0.03 7.27 16 13 C -0.54 -14.95 9.28 -34.44 -0.32 -15.26 16 14 H 0.06 1.63 7.60 -52.49 -0.40 1.24 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 17 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H 0.03 0.37 8.01 -51.93 -0.42 -0.05 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 24 H 0.05 0.43 7.97 -51.93 -0.41 0.01 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.80 7.88 -51.92 -0.41 0.39 16 30 H 0.39 5.27 8.76 -40.82 -0.36 4.91 16 31 H 0.39 7.35 8.34 -40.82 -0.34 7.01 16 32 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 286.28 15.07 4.31 4.31 Total: -1.00 -32.74 286.28 -8.41 -41.16 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.20 Total: 6.31 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -1.38 Total: 10.11 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -1.21 Total: -62.71 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.08 Total: -15.28 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.74 -8.41 -41.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260715130.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.073 kcal (2) G-P(sol) polarization free energy of solvation -32.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds