Wall clock time and date at job start Mon Mar 30 2020 03:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48806 * 111.18798 * 2 1 4 4 C 1.54935 * 103.35098 * 159.50343 * 3 2 1 5 5 C 1.54588 * 102.92060 * 322.69064 * 4 3 2 6 6 C 1.47901 * 110.99708 * 117.33682 * 2 1 3 7 7 H 1.08996 * 109.91830 * 333.70278 * 6 2 1 8 8 N 1.46500 * 109.91967 * 94.80364 * 6 2 1 9 9 C 1.34772 * 120.00121 * 253.19864 * 8 6 2 10 10 O 1.21583 * 119.99720 * 359.97438 * 9 8 6 11 11 N 1.34780 * 120.00305 * 179.97438 * 9 8 6 12 12 C 1.46491 * 120.00091 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.46957 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 H 1.08996 * 109.46938 * 302.66384 * 1 2 3 22 22 H 1.08999 * 109.47035 * 62.66350 * 1 2 3 23 23 H 1.08999 * 109.47179 * 182.66303 * 1 2 3 24 24 H 1.09005 * 110.51686 * 41.06774 * 3 2 1 25 25 H 1.09000 * 110.84064 * 278.09505 * 3 2 1 26 26 H 1.09001 * 110.72412 * 204.33308 * 4 3 2 27 27 H 1.08999 * 110.87304 * 81.12034 * 4 3 2 28 28 H 1.09003 * 110.31155 * 263.03417 * 5 4 3 29 29 H 1.09009 * 110.39196 * 140.91421 * 5 4 3 30 30 H 0.97005 * 120.00110 * 73.18746 * 8 6 2 31 31 H 0.97003 * 119.99349 * 359.97438 * 11 9 8 32 32 H 1.09004 * 109.47166 * 60.00164 * 12 11 9 33 33 H 1.08994 * 109.47507 * 299.99870 * 12 11 9 34 34 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0069 1.3875 0.0000 4 6 3.4528 1.2107 0.5278 5 6 3.2974 0.1059 1.5979 6 6 1.9990 -0.6341 1.2266 7 1 1.2743 -0.5412 2.0355 8 7 2.2855 -2.0483 0.9735 9 6 1.4825 -3.0010 1.4873 10 8 0.5206 -2.6867 2.1612 11 7 1.7458 -4.3021 1.2541 12 6 0.8733 -5.3376 1.8130 13 6 1.3828 -6.6966 1.4072 14 1 2.2684 -6.7805 0.7946 15 6 0.7221 -7.8331 1.8232 16 7 -0.3560 -7.7309 2.5695 17 14 1.3582 -9.5177 1.3267 18 1 2.5769 -9.3607 0.4929 19 1 1.6894 -10.3005 2.5445 20 1 0.3141 -10.2315 0.5483 21 1 -0.3633 0.5546 0.8651 22 1 -0.3633 0.4719 -0.9129 23 1 -0.3633 -1.0265 0.0477 24 1 1.4273 2.0219 0.6707 25 1 2.0133 1.8009 -1.0085 26 1 3.8149 2.1352 0.9776 27 1 4.1201 0.8841 -0.2697 28 1 3.2097 0.5495 2.5898 29 1 4.1456 -0.5779 1.5638 30 1 3.0531 -2.2991 0.4361 31 1 2.5131 -4.5528 0.7161 32 1 -0.1400 -5.2021 1.4346 33 1 0.8684 -5.2608 2.9002 34 1 -0.8210 -8.5304 2.8619 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260715130.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:00 Heat of formation + Delta-G solvation = -53.940244 kcal Electronic energy + Delta-G solvation = -15806.332116 eV Core-core repulsion = 13158.883541 eV Total energy + Delta-G solvation = -2647.448575 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.17599 -39.47630 -36.13351 -34.91089 -34.15341 -33.07108 -29.71551 -28.20811 -26.51792 -24.68407 -22.17201 -21.97444 -21.65981 -19.87423 -18.08286 -17.76897 -16.75732 -16.59150 -16.43321 -15.87198 -15.24250 -14.90190 -14.68720 -14.58535 -14.04503 -14.00080 -13.51190 -13.01191 -12.84221 -12.74878 -12.50783 -12.44565 -12.21139 -11.98849 -11.65457 -11.44000 -11.23275 -10.81220 -10.37381 -9.73252 -9.46673 -8.28225 -6.44629 1.43936 1.45664 1.58939 1.83689 2.22617 2.40100 3.06598 3.09655 3.53615 3.63932 3.85722 4.00939 4.31622 4.39342 4.46700 4.58720 4.71269 4.90778 4.92455 5.01536 5.07681 5.13025 5.26691 5.28850 5.49164 5.53040 5.64834 5.83376 5.86314 5.99303 6.32727 6.67458 7.24832 7.32834 7.72767 8.84551 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.057968 B = 0.004992 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.911929 B = 5607.818055 C = 5785.008261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.545 5.545 3 C 0.036 3.964 4 C -0.112 4.112 5 C -0.130 4.130 6 C 0.296 3.704 7 H 0.052 0.948 8 N -0.714 5.714 9 C 0.694 3.306 10 O -0.651 6.651 11 N -0.723 5.723 12 C 0.286 3.714 13 C -0.554 4.554 14 H 0.084 0.916 15 C 0.003 3.997 16 N -0.932 5.932 17 Si 0.988 3.012 18 H -0.253 1.253 19 H -0.278 1.278 20 H -0.279 1.279 21 H 0.028 0.972 22 H 0.088 0.912 23 H 0.033 0.967 24 H 0.052 0.948 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.409 0.591 31 H 0.404 0.596 32 H -0.017 1.017 33 H -0.014 1.014 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.182 16.791 -6.393 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.272 5.272 3 C -0.092 4.092 4 C -0.150 4.150 5 C -0.170 4.170 6 C 0.101 3.899 7 H 0.070 0.930 8 N -0.372 5.372 9 C 0.393 3.607 10 O -0.534 6.534 11 N -0.376 5.376 12 C 0.163 3.837 13 C -0.592 4.592 14 H 0.102 0.898 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.811 3.189 18 H -0.177 1.177 19 H -0.204 1.204 20 H -0.204 1.204 21 H 0.047 0.953 22 H 0.106 0.894 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.246 0.754 31 H 0.240 0.760 32 H 0.001 0.999 33 H 0.004 0.996 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.324 16.673 -6.151 20.069 hybrid contribution -0.231 -0.880 0.387 0.988 sum 9.093 15.793 -5.764 19.114 Atomic orbital electron populations 1.22333 0.87754 1.00565 1.01360 1.64333 1.08267 1.16885 1.37732 1.23360 0.95703 0.87603 1.02500 1.22489 0.95807 0.98746 0.97929 1.22662 0.95462 0.98388 1.00439 1.22058 0.97484 0.79613 0.90727 0.92982 1.44984 1.30654 1.04635 1.56887 1.16345 0.82446 0.81774 0.80138 1.90816 1.32948 1.82425 1.47205 1.45309 1.32467 1.03746 1.56079 1.18400 0.88395 0.85121 0.91822 1.21633 1.13283 0.90383 1.33868 0.89844 1.26079 0.94719 1.04433 0.94366 1.70157 1.19588 1.31072 1.36230 0.85072 0.78662 0.77073 0.78141 1.17655 1.20362 1.20444 0.95298 0.89381 0.94780 0.93010 0.88349 0.88373 0.89725 0.89745 0.89231 0.75440 0.76045 0.99898 0.99650 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.41 127.69 1.20 2.00 16 2 N -0.55 -13.83 5.42 -895.12 -4.85 -18.68 16 3 C 0.04 0.60 6.58 86.60 0.57 1.17 16 4 C -0.11 -1.49 7.06 31.80 0.22 -1.27 16 5 C -0.13 -2.42 6.70 31.47 0.21 -2.20 16 6 C 0.30 8.30 3.18 129.37 0.41 8.71 16 7 H 0.05 1.84 6.65 -2.39 -0.02 1.82 16 8 N -0.71 -22.68 5.11 -463.94 -2.37 -25.05 16 9 C 0.69 30.48 8.57 179.05 1.53 32.02 16 10 O -0.65 -34.92 15.74 -3.98 -0.06 -34.98 16 11 N -0.72 -32.61 5.55 -482.32 -2.68 -35.29 16 12 C 0.29 16.36 5.43 85.64 0.46 16.82 16 13 C -0.55 -30.87 9.28 25.60 0.24 -30.63 16 14 H 0.08 4.21 7.60 -2.91 -0.02 4.19 16 15 C 0.00 0.19 5.46 84.66 0.46 0.66 16 16 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 17 Si 0.99 42.91 29.54 68.60 2.03 44.94 16 18 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 19 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 20 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 21 H 0.03 0.77 8.01 -2.39 -0.02 0.75 16 22 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 24 H 0.05 0.83 7.97 -2.38 -0.02 0.81 16 25 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.09 1.52 7.88 -2.38 -0.02 1.50 16 30 H 0.41 10.31 8.76 -92.70 -0.81 9.50 16 31 H 0.40 15.15 8.34 -92.71 -0.77 14.37 16 32 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 33 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 34 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -74.36 286.28 -2.82 -77.19 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -0.49 Total: 21.48 kcal Atomic # 6 Polarization: 21.96 SS G_CDS: 5.32 Total: 27.28 kcal Atomic # 7 Polarization: -126.28 SS G_CDS: -9.62 Total: -135.90 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -0.06 Total: -34.98 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -74.36 -2.82 -77.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260715130.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.249 kcal (2) G-P(sol) polarization free energy of solvation -74.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds