Wall clock time and date at job start Mon Mar 30 2020 03:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47440 * 110.99676 * 2 1 4 4 C 1.54317 * 107.23368 * 236.73977 * 3 2 1 5 5 C 1.55144 * 103.01861 * 337.71644 * 4 3 2 6 6 C 1.47842 * 111.00238 * 239.15389 * 2 1 3 7 7 H 1.08998 * 110.37031 * 27.53480 * 6 2 1 8 8 N 1.46502 * 110.37359 * 265.30205 * 6 2 1 9 9 C 1.34779 * 119.99716 * 106.45572 * 8 6 2 10 10 O 1.21588 * 119.99912 * 0.02562 * 9 8 6 11 11 N 1.34772 * 120.00048 * 180.02562 * 9 8 6 12 12 C 1.46499 * 120.00465 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47508 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00114 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00140 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99932 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00208 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47050 * 90.00144 * 17 15 13 19 19 H 1.48503 * 109.47112 * 210.00461 * 17 15 13 20 20 H 1.48498 * 109.47025 * 330.00203 * 17 15 13 21 21 H 1.09002 * 109.46689 * 59.87970 * 1 2 3 22 22 H 1.09005 * 109.46763 * 179.87410 * 1 2 3 23 23 H 1.08994 * 109.47039 * 299.87765 * 1 2 3 24 24 H 1.09000 * 109.89463 * 117.33566 * 3 2 1 25 25 H 1.09001 * 110.02673 * 356.21799 * 3 2 1 26 26 H 1.08999 * 110.70846 * 96.09223 * 4 3 2 27 27 H 1.09000 * 110.71111 * 219.33808 * 4 3 2 28 28 H 1.09002 * 110.99593 * 153.74641 * 5 4 3 29 29 H 1.09000 * 110.99290 * 277.56635 * 5 4 3 30 30 H 0.97001 * 120.00097 * 286.45470 * 8 6 2 31 31 H 0.97001 * 119.99766 * 359.97438 * 11 9 8 32 32 H 1.09001 * 109.46653 * 299.99707 * 12 11 9 33 33 H 1.09004 * 109.47174 * 59.98895 * 12 11 9 34 34 H 0.97001 * 120.00326 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3765 0.0000 4 6 2.9158 1.5137 -1.2324 5 6 3.3048 0.0444 -1.5437 6 6 1.9989 -0.7077 -1.1850 7 1 1.2890 -0.6502 -2.0101 8 7 2.2867 -2.1063 -0.8573 9 6 1.4798 -3.0849 -1.3131 10 8 0.5134 -2.8070 -1.9965 11 7 1.7442 -4.3715 -1.0113 12 6 0.8676 -5.4354 -1.5072 13 6 1.3801 -6.7707 -1.0327 14 1 2.2702 -6.8219 -0.4231 15 6 0.7128 -7.9271 -1.3768 16 7 -0.3708 -7.8648 -2.1195 17 14 1.3485 -9.5825 -0.7892 18 1 0.7329 -9.9123 0.5213 19 1 0.9932 -10.6294 -1.7806 20 1 2.8249 -9.5216 -0.6413 21 1 -0.3633 0.5157 -0.8889 22 1 -0.3633 -1.0277 -0.0023 23 1 -0.3633 0.5119 0.8910 24 1 2.5697 1.5541 0.9105 25 1 1.1771 2.0911 -0.0676 26 1 2.3744 1.9545 -2.0695 27 1 3.8001 2.1034 -0.9905 28 1 3.5497 -0.0797 -2.5986 29 1 4.1302 -0.2833 -0.9117 30 1 3.0580 -2.3280 -0.3124 31 1 2.5155 -4.5932 -0.4664 32 1 -0.1430 -5.2787 -1.1298 33 1 0.8552 -5.4176 -2.5970 34 1 -0.8401 -8.6784 -2.3619 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260715140.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:02 Heat of formation + Delta-G solvation = -28.181224 kcal Electronic energy + Delta-G solvation = -15794.354236 eV Core-core repulsion = 13148.022656 eV Total energy + Delta-G solvation = -2646.331580 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.72768 -38.19477 -34.12743 -33.38756 -32.17369 -32.04579 -28.18962 -26.63524 -25.44923 -22.66699 -21.29305 -20.72062 -20.03134 -18.07366 -16.47510 -16.19083 -15.69983 -14.97299 -14.65158 -14.36809 -13.95397 -13.40190 -13.31667 -13.03884 -12.72546 -12.13743 -11.95265 -11.90954 -11.59597 -11.29882 -11.23904 -10.92418 -10.85865 -10.83798 -10.26590 -9.40725 -9.33279 -8.85834 -8.68332 -8.33692 -7.72247 -6.12093 -4.18373 3.27336 3.27727 3.33928 3.37461 3.88048 4.27792 4.36976 4.52880 4.61142 4.81449 5.14090 5.24060 5.28996 5.30083 5.46630 5.54018 5.62039 5.66055 5.81234 5.87228 6.04850 6.12765 6.79076 6.92198 7.12634 7.23524 7.56389 7.61161 7.61504 7.96789 8.10317 8.80836 9.00098 9.37885 9.52463 10.98242 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.060899 B = 0.004928 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.668845 B = 5679.935769 C = 5820.685923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.551 5.551 3 C 0.047 3.953 4 C -0.141 4.141 5 C -0.133 4.133 6 C 0.310 3.690 7 H 0.089 0.911 8 N -0.736 5.736 9 C 0.695 3.305 10 O -0.605 6.605 11 N -0.728 5.728 12 C 0.267 3.733 13 C -0.541 4.541 14 H 0.062 0.938 15 C 0.063 3.937 16 N -0.886 5.886 17 Si 0.904 3.096 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 H 0.027 0.973 22 H 0.074 0.926 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.393 0.607 31 H 0.387 0.613 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.471 16.501 3.725 18.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.278 5.278 3 C -0.081 4.081 4 C -0.180 4.180 5 C -0.172 4.172 6 C 0.116 3.884 7 H 0.107 0.893 8 N -0.392 5.392 9 C 0.395 3.605 10 O -0.485 6.485 11 N -0.380 5.380 12 C 0.146 3.854 13 C -0.579 4.579 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.524 5.524 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 H 0.045 0.955 22 H 0.092 0.908 23 H 0.082 0.918 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.226 0.774 31 H 0.219 0.781 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.532 16.307 3.424 17.897 hybrid contribution 0.622 -0.763 0.180 1.001 sum 7.154 15.544 3.604 17.486 Atomic orbital electron populations 1.22453 0.86809 1.02967 0.99851 1.63136 1.08697 1.13648 1.42274 1.22722 0.97931 0.89200 0.98285 1.22760 1.00099 0.96837 0.98326 1.22903 0.97471 0.94565 1.02270 1.22002 0.95497 0.80247 0.90661 0.89311 1.45075 1.31013 1.04818 1.58299 1.16176 0.82553 0.81312 0.80466 1.90850 1.30478 1.82734 1.44444 1.45715 1.32004 1.04630 1.55660 1.18968 0.89137 0.82378 0.94925 1.21236 1.12069 0.90797 1.33816 0.91947 1.24942 0.94785 0.99434 0.94862 1.69981 1.17586 1.28829 1.35993 0.86414 0.79104 0.82882 0.78478 1.20492 1.21042 1.19777 0.95485 0.90752 0.91828 0.90598 0.92589 0.91240 0.90486 0.90165 0.90217 0.77405 0.78122 0.95798 0.95793 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.12 60.07 0.55 0.93 16 2 N -0.55 -7.31 5.32 -235.33 -1.25 -8.57 16 3 C 0.05 0.47 6.89 -2.84 -0.02 0.45 16 4 C -0.14 -1.22 6.94 -24.91 -0.17 -1.39 16 5 C -0.13 -1.39 6.73 -24.59 -0.17 -1.55 16 6 C 0.31 4.43 3.13 -125.15 -0.39 4.04 16 7 H 0.09 1.50 6.76 -51.93 -0.35 1.15 16 8 N -0.74 -11.78 5.27 -60.15 -0.32 -12.09 16 9 C 0.70 14.80 8.57 -86.92 -0.74 14.06 16 10 O -0.61 -15.33 15.77 5.29 0.08 -15.24 16 11 N -0.73 -16.05 5.55 -66.42 -0.37 -16.42 16 12 C 0.27 7.30 5.43 -5.20 -0.03 7.27 16 13 C -0.54 -14.95 9.28 -34.44 -0.32 -15.27 16 14 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 15 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 17 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 H 0.03 0.35 8.11 -51.93 -0.42 -0.07 16 22 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.51 7.59 -51.93 -0.39 0.11 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.76 8.13 -51.93 -0.42 0.34 16 30 H 0.39 5.25 8.80 -40.82 -0.36 4.89 16 31 H 0.39 7.34 8.34 -40.82 -0.34 7.00 16 32 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 286.38 15.07 4.32 4.32 Total: -1.00 -32.66 286.38 -8.42 -41.08 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.20 Total: 6.39 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: -1.39 Total: 10.21 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -1.20 Total: -62.83 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.08 Total: -15.24 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.66 -8.42 -41.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260715140.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.899 kcal (2) G-P(sol) polarization free energy of solvation -32.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds