Wall clock time and date at job start Mon Mar 30 2020 03:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47440 * 110.99676 * 2 1 4 4 C 1.54317 * 107.23368 * 236.73977 * 3 2 1 5 5 C 1.55144 * 103.01861 * 337.71644 * 4 3 2 6 6 C 1.47842 * 111.00238 * 239.15389 * 2 1 3 7 7 H 1.08998 * 110.37031 * 27.53480 * 6 2 1 8 8 N 1.46502 * 110.37359 * 265.30205 * 6 2 1 9 9 C 1.34779 * 119.99716 * 106.45572 * 8 6 2 10 10 O 1.21588 * 119.99912 * 0.02562 * 9 8 6 11 11 N 1.34772 * 120.00048 * 180.02562 * 9 8 6 12 12 C 1.46499 * 120.00465 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47508 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00114 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00140 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99932 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00208 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47050 * 90.00144 * 17 15 13 19 19 H 1.48503 * 109.47112 * 210.00461 * 17 15 13 20 20 H 1.48498 * 109.47025 * 330.00203 * 17 15 13 21 21 H 1.09002 * 109.46689 * 59.87970 * 1 2 3 22 22 H 1.09005 * 109.46763 * 179.87410 * 1 2 3 23 23 H 1.08994 * 109.47039 * 299.87765 * 1 2 3 24 24 H 1.09000 * 109.89463 * 117.33566 * 3 2 1 25 25 H 1.09001 * 110.02673 * 356.21799 * 3 2 1 26 26 H 1.08999 * 110.70846 * 96.09223 * 4 3 2 27 27 H 1.09000 * 110.71111 * 219.33808 * 4 3 2 28 28 H 1.09002 * 110.99593 * 153.74641 * 5 4 3 29 29 H 1.09000 * 110.99290 * 277.56635 * 5 4 3 30 30 H 0.97001 * 120.00097 * 286.45470 * 8 6 2 31 31 H 0.97001 * 119.99766 * 359.97438 * 11 9 8 32 32 H 1.09001 * 109.46653 * 299.99707 * 12 11 9 33 33 H 1.09004 * 109.47174 * 59.98895 * 12 11 9 34 34 H 0.97001 * 120.00326 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3765 0.0000 4 6 2.9158 1.5137 -1.2324 5 6 3.3048 0.0444 -1.5437 6 6 1.9989 -0.7077 -1.1850 7 1 1.2890 -0.6502 -2.0101 8 7 2.2867 -2.1063 -0.8573 9 6 1.4798 -3.0849 -1.3131 10 8 0.5134 -2.8070 -1.9965 11 7 1.7442 -4.3715 -1.0113 12 6 0.8676 -5.4354 -1.5072 13 6 1.3801 -6.7707 -1.0327 14 1 2.2702 -6.8219 -0.4231 15 6 0.7128 -7.9271 -1.3768 16 7 -0.3708 -7.8648 -2.1195 17 14 1.3485 -9.5825 -0.7892 18 1 0.7329 -9.9123 0.5213 19 1 0.9932 -10.6294 -1.7806 20 1 2.8249 -9.5216 -0.6413 21 1 -0.3633 0.5157 -0.8889 22 1 -0.3633 -1.0277 -0.0023 23 1 -0.3633 0.5119 0.8910 24 1 2.5697 1.5541 0.9105 25 1 1.1771 2.0911 -0.0676 26 1 2.3744 1.9545 -2.0695 27 1 3.8001 2.1034 -0.9905 28 1 3.5497 -0.0797 -2.5986 29 1 4.1302 -0.2833 -0.9117 30 1 3.0580 -2.3280 -0.3124 31 1 2.5155 -4.5932 -0.4664 32 1 -0.1430 -5.2787 -1.1298 33 1 0.8552 -5.4176 -2.5970 34 1 -0.8401 -8.6784 -2.3619 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260715140.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:02 Heat of formation + Delta-G solvation = -54.966335 kcal Electronic energy + Delta-G solvation = -15795.515725 eV Core-core repulsion = 13148.022656 eV Total energy + Delta-G solvation = -2647.493069 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.15987 -39.53500 -36.13444 -34.94228 -34.16354 -32.98364 -29.73386 -28.23151 -26.54107 -24.69093 -22.18829 -22.14695 -21.45957 -19.84297 -18.08133 -17.71442 -17.02169 -16.63865 -16.24456 -15.96296 -15.28033 -14.97878 -14.54031 -14.30351 -14.04424 -13.97155 -13.63676 -13.14648 -12.87207 -12.73184 -12.66121 -12.31193 -12.20679 -12.09057 -11.63533 -11.46576 -11.24668 -10.79702 -10.36119 -9.69229 -9.38386 -8.27706 -6.44274 1.44073 1.47173 1.58093 1.83110 2.22065 2.40390 3.06910 3.10233 3.53158 3.64401 3.82316 4.04028 4.25685 4.39802 4.44207 4.56444 4.74599 4.91180 4.94134 4.97060 5.05834 5.10466 5.27036 5.32206 5.49324 5.53215 5.65833 5.84797 5.88056 6.07003 6.33412 6.67552 7.25152 7.33110 7.72873 8.84822 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.060899 B = 0.004928 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.668845 B = 5679.935769 C = 5820.685923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.559 5.559 3 C 0.044 3.956 4 C -0.132 4.132 5 C -0.124 4.124 6 C 0.301 3.699 7 H 0.055 0.945 8 N -0.714 5.714 9 C 0.694 3.306 10 O -0.651 6.651 11 N -0.722 5.722 12 C 0.286 3.714 13 C -0.555 4.555 14 H 0.084 0.916 15 C 0.004 3.996 16 N -0.932 5.932 17 Si 0.987 3.013 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.255 1.255 21 H 0.028 0.972 22 H 0.032 0.968 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.105 0.895 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.410 0.590 31 H 0.404 0.596 32 H -0.017 1.017 33 H -0.014 1.014 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.972 17.193 5.168 20.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.286 5.286 3 C -0.083 4.083 4 C -0.171 4.171 5 C -0.163 4.163 6 C 0.107 3.893 7 H 0.073 0.927 8 N -0.370 5.370 9 C 0.393 3.607 10 O -0.534 6.534 11 N -0.376 5.376 12 C 0.163 3.837 13 C -0.593 4.593 14 H 0.102 0.898 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.810 3.190 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.179 1.179 21 H 0.046 0.954 22 H 0.051 0.949 23 H 0.104 0.896 24 H 0.110 0.890 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.124 0.876 28 H 0.102 0.898 29 H 0.114 0.886 30 H 0.246 0.754 31 H 0.240 0.760 32 H 0.001 0.999 33 H 0.004 0.996 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.105 17.065 4.913 19.956 hybrid contribution -0.187 -0.860 -0.268 0.920 sum 8.918 16.205 4.645 19.071 Atomic orbital electron populations 1.22367 0.87635 1.00590 1.01039 1.63116 1.08104 1.15990 1.41341 1.22868 0.98659 0.87112 0.99700 1.22762 1.00887 0.95706 0.97696 1.22897 0.95458 0.95130 1.02831 1.22221 0.97324 0.79550 0.90245 0.92666 1.44894 1.30182 1.04685 1.57289 1.16338 0.82489 0.81708 0.80130 1.90819 1.32677 1.83401 1.46458 1.45309 1.32015 1.04184 1.56081 1.18398 0.88333 0.84475 0.92507 1.21600 1.12814 0.90754 1.34091 0.89842 1.26074 0.94714 1.04172 0.94601 1.70147 1.19217 1.30296 1.37378 0.85124 0.79254 0.76744 0.77867 1.19633 1.20884 1.17881 0.95359 0.94883 0.89551 0.89029 0.91577 0.91007 0.87641 0.89810 0.88588 0.75403 0.76031 0.99893 0.99643 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 9.12 127.69 1.16 2.06 16 2 N -0.56 -14.15 5.32 -898.44 -4.78 -18.94 16 3 C 0.04 0.74 6.89 86.65 0.60 1.34 16 4 C -0.13 -1.83 6.94 31.78 0.22 -1.61 16 5 C -0.12 -2.27 6.73 31.98 0.22 -2.06 16 6 C 0.30 8.43 3.13 129.71 0.41 8.83 16 7 H 0.06 1.94 6.76 -2.39 -0.02 1.92 16 8 N -0.71 -22.61 5.27 -462.47 -2.44 -25.05 16 9 C 0.69 30.45 8.57 179.06 1.53 31.99 16 10 O -0.65 -34.84 15.77 -3.99 -0.06 -34.90 16 11 N -0.72 -32.55 5.55 -482.30 -2.68 -35.23 16 12 C 0.29 16.35 5.43 85.63 0.46 16.82 16 13 C -0.55 -30.89 9.28 25.60 0.24 -30.66 16 14 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 15 C 0.00 0.22 5.46 84.65 0.46 0.68 16 16 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 17 Si 0.99 42.86 29.54 68.60 2.03 44.89 16 18 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 21 H 0.03 0.75 8.11 -2.39 -0.02 0.73 16 22 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 23 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 25 H 0.07 1.01 7.59 -2.39 -0.02 0.99 16 26 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.10 1.48 8.13 -2.39 -0.02 1.46 16 30 H 0.41 10.25 8.80 -92.71 -0.82 9.43 16 31 H 0.40 15.11 8.34 -92.71 -0.77 14.34 16 32 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 33 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 34 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -74.20 286.38 -2.84 -77.04 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -0.49 Total: 21.66 kcal Atomic # 6 Polarization: 22.10 SS G_CDS: 5.30 Total: 27.40 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -9.61 Total: -136.08 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -0.06 Total: -34.90 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -74.20 -2.84 -77.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260715140.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.073 kcal (2) G-P(sol) polarization free energy of solvation -74.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds