Wall clock time and date at job start Mon Mar 30 2020 03:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99865 * 2 1 4 4 H 1.48502 * 109.47015 * 264.81804 * 3 2 1 5 5 H 1.48506 * 109.47008 * 24.81353 * 3 2 1 6 6 H 1.48498 * 109.47502 * 144.81481 * 3 2 1 7 7 C 1.37868 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00229 * 352.75952 * 7 2 1 9 9 C 1.50709 * 120.00320 * 172.76728 * 7 2 1 10 10 F 1.39906 * 109.47025 * 326.80806 * 9 7 2 11 11 C 1.51351 * 109.47436 * 86.81165 * 9 7 2 12 12 C 1.52274 * 110.34331 * 210.08127 * 11 9 7 13 13 C 1.48184 * 114.79314 * 275.57487 * 12 11 9 14 14 C 1.55449 * 109.01177 * 62.53243 * 13 12 11 15 15 N 1.40348 * 110.30033 * 288.29286 * 14 13 12 16 16 C 1.44664 * 124.32668 * 255.79619 * 15 14 13 17 17 C 1.54801 * 105.93860 * 172.19833 * 16 15 14 18 18 C 1.54930 * 105.22963 * 358.59867 * 17 16 15 19 19 C 1.45960 * 124.16151 * 90.83912 * 15 14 13 20 20 H 1.09003 * 110.24154 * 83.70316 * 19 15 14 21 21 H 0.96995 * 119.99911 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.33835 * 330.29878 * 11 9 7 23 23 H 1.09007 * 109.33415 * 89.80018 * 11 9 7 24 24 H 1.08999 * 108.55710 * 154.13025 * 12 11 9 25 25 H 1.09002 * 108.35924 * 36.88209 * 12 11 9 26 26 H 1.08994 * 109.56662 * 302.64735 * 13 12 11 27 27 H 1.08995 * 109.56442 * 182.41840 * 13 12 11 28 28 H 1.09002 * 109.33103 * 48.54816 * 14 13 12 29 29 H 1.09007 * 109.33104 * 168.03810 * 14 13 12 30 30 H 1.09002 * 110.15642 * 291.31516 * 16 15 14 31 31 H 1.09000 * 110.16076 * 53.08071 * 16 15 14 32 32 H 1.09003 * 110.29388 * 117.53746 * 17 16 15 33 33 H 1.09000 * 110.29306 * 239.65695 * 17 16 15 34 34 H 1.08997 * 110.62356 * 139.75198 * 18 17 16 35 35 H 1.09004 * 110.62215 * 262.60155 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6061 1.9832 -1.3944 5 1 1.3960 2.6819 0.5876 6 1 3.4876 1.4745 0.8067 7 6 2.0046 -1.1939 -0.0005 8 1 1.4711 -2.1256 0.1169 9 6 3.5027 -1.1990 -0.1649 10 9 3.8837 -0.1441 -1.0011 11 6 4.1593 -1.0325 1.1886 12 6 5.4952 -0.3161 1.0443 13 6 6.6381 -1.1953 0.7026 14 6 6.3784 -1.8472 -0.6845 15 7 5.3643 -2.8125 -0.5867 16 6 5.5949 -4.2406 -0.5839 17 6 4.2283 -4.8912 -0.2592 18 6 3.2523 -3.7060 -0.0516 19 6 3.9458 -2.5344 -0.7891 20 1 3.7041 -2.5611 -1.8517 21 1 -0.4850 0.8400 -0.0004 22 1 3.5062 -0.4487 1.8373 23 1 4.3224 -2.0140 1.6338 24 1 5.7200 0.1911 1.9825 25 1 5.3972 0.4394 0.2647 26 1 6.7385 -1.9739 1.4586 27 1 7.5535 -0.6050 0.6627 28 1 6.0764 -1.0771 -1.3943 29 1 7.2945 -2.3208 -1.0378 30 1 5.9428 -4.5668 -1.5641 31 1 6.3263 -4.5016 0.1809 32 1 3.8976 -5.5118 -1.0921 33 1 4.2996 -5.4862 0.6513 34 1 2.2835 -3.9231 -0.5015 35 1 3.1401 -3.4824 1.0093 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260736218.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:54 Heat of formation + Delta-G solvation = -60.820270 kcal Electronic energy + Delta-G solvation = -17540.460687 eV Core-core repulsion = 14872.793810 eV Total energy + Delta-G solvation = -2667.666877 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.67626 -40.35593 -36.29016 -35.33025 -33.56483 -31.41943 -28.92556 -27.84550 -25.18388 -24.03156 -22.09436 -20.89601 -20.11369 -18.81564 -17.82267 -17.36925 -16.84172 -16.05648 -15.48264 -15.30122 -14.98525 -14.93627 -14.42231 -14.15660 -13.90327 -13.37024 -13.05394 -12.86339 -12.81465 -12.56859 -12.22306 -12.01071 -11.90433 -11.74896 -11.48381 -11.43616 -11.26780 -11.08308 -10.69044 -10.59732 -8.41641 -8.37095 -6.48755 1.36237 1.37520 1.54087 2.32280 2.84372 3.02774 3.82945 3.83652 4.05032 4.09478 4.17436 4.30114 4.33433 4.43139 4.46110 4.69680 4.74960 4.80383 4.94575 5.02725 5.05122 5.11151 5.16303 5.19554 5.22819 5.36258 5.39172 5.45457 5.53309 5.60978 5.69515 6.20426 6.53481 6.63825 7.20990 7.22413 8.73152 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.031541 B = 0.013461 C = 0.010557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.529641 B = 2079.575507 C = 2651.693310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.029 3.971 3 Si 0.966 3.034 4 H -0.296 1.296 5 H -0.322 1.322 6 H -0.246 1.246 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.208 3.792 10 F -0.231 7.231 11 C -0.115 4.115 12 C -0.124 4.124 13 C -0.124 4.124 14 C 0.151 3.849 15 N -0.693 5.693 16 C 0.129 3.871 17 C -0.125 4.125 18 C -0.107 4.107 19 C 0.146 3.854 20 H 0.025 0.975 21 H 0.267 0.733 22 H 0.041 0.959 23 H 0.078 0.922 24 H 0.055 0.945 25 H 0.043 0.957 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.031 0.969 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.955 -6.808 0.985 15.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.171 4.171 3 Si 0.797 3.203 4 H -0.223 1.223 5 H -0.253 1.253 6 H -0.170 1.170 7 C -0.584 4.584 8 H 0.090 0.910 9 C 0.189 3.811 10 F -0.212 7.212 11 C -0.153 4.153 12 C -0.162 4.162 13 C -0.163 4.163 14 C 0.024 3.976 15 N -0.422 5.422 16 C 0.005 3.995 17 C -0.163 4.163 18 C -0.146 4.146 19 C 0.040 3.960 20 H 0.042 0.958 21 H 0.076 0.924 22 H 0.060 0.940 23 H 0.097 0.903 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.049 0.951 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.887 -6.655 1.062 15.435 hybrid contribution -0.547 1.263 -0.441 1.445 sum 13.339 -5.392 0.622 14.401 Atomic orbital electron populations 1.70021 1.07793 1.28203 1.50724 1.25664 0.95460 1.02730 0.93258 0.85657 0.78326 0.78290 0.77990 1.22317 1.25312 1.16967 1.21535 0.90655 0.94883 1.51314 0.90980 1.19129 0.93523 0.81488 0.86918 1.92168 1.92309 1.61122 1.75576 1.21665 0.95492 1.01334 0.96785 1.20596 0.95162 0.99292 1.01112 1.21591 0.96852 0.98948 0.98948 1.20237 0.90874 0.91151 0.95324 1.47451 1.02733 1.04583 1.87440 1.21410 0.97059 0.81379 0.99612 1.22627 0.94196 0.96769 1.02669 1.22429 0.97639 0.94147 1.00338 1.21678 0.83649 0.94561 0.96156 0.95756 0.92397 0.94050 0.90335 0.92669 0.93818 0.91461 0.90140 0.95092 0.90405 0.94292 0.90984 0.90651 0.89531 0.92478 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.91 13.96 21.44 0.30 -57.61 16 2 C 0.03 1.71 5.46 84.65 0.46 2.17 16 3 Si 0.97 49.75 24.52 68.60 1.68 51.43 16 4 H -0.30 -15.55 7.11 99.48 0.71 -14.84 16 5 H -0.32 -16.56 7.11 99.48 0.71 -15.85 16 6 H -0.25 -11.74 5.13 99.48 0.51 -11.23 16 7 C -0.55 -30.37 8.13 25.60 0.21 -30.17 16 8 H 0.07 4.23 6.41 -2.91 -0.02 4.21 16 9 C 0.21 9.73 0.49 -11.77 -0.01 9.72 16 10 F -0.23 -11.48 9.68 44.97 0.44 -11.04 16 11 C -0.11 -4.77 3.81 29.81 0.11 -4.66 16 12 C -0.12 -4.42 4.53 28.84 0.13 -4.29 16 13 C -0.12 -3.48 5.94 29.92 0.18 -3.30 16 14 C 0.15 4.48 5.77 88.33 0.51 4.99 16 15 N -0.69 -22.32 2.45 -880.85 -2.16 -24.48 16 16 C 0.13 3.27 7.15 87.34 0.62 3.89 16 17 C -0.12 -3.21 6.98 31.87 0.22 -2.98 16 18 C -0.11 -3.82 4.79 31.88 0.15 -3.67 16 19 C 0.15 5.85 2.87 46.03 0.13 5.98 16 20 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 21 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 22 H 0.04 1.88 6.73 -2.39 -0.02 1.86 16 23 H 0.08 3.05 6.27 -2.38 -0.01 3.04 16 24 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.04 1.73 5.94 -2.39 -0.01 1.72 16 26 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.03 1.07 7.06 -2.39 -0.02 1.05 16 29 H 0.08 1.85 8.02 -2.38 -0.02 1.83 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.06 2.19 7.59 -2.39 -0.02 2.17 16 35 H 0.06 2.43 6.65 -2.38 -0.02 2.41 16 Total: -1.00 -64.04 254.00 3.85 -60.19 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: 0.86 Total: 3.83 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: 2.73 Total: -22.32 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -1.86 Total: -82.09 kcal Atomic # 9 Polarization: -11.48 SS G_CDS: 0.44 Total: -11.04 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 1.68 Total: 51.43 kcal Total: -64.04 3.85 -60.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260736218.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.626 kcal (2) G-P(sol) polarization free energy of solvation -64.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds