Wall clock time and date at job start Mon Mar 30 2020 03:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99962 * 2 1 4 4 H 1.48497 * 109.47203 * 269.99759 * 3 2 1 5 5 H 1.48501 * 109.47123 * 29.99920 * 3 2 1 6 6 H 1.48498 * 109.46763 * 150.00021 * 3 2 1 7 7 C 1.37870 * 119.99629 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99942 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00248 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.57837 * 300.25149 * 9 7 2 11 11 C 1.50460 * 109.57297 * 60.63468 * 9 7 2 12 12 C 1.54292 * 113.03514 * 211.96658 * 11 9 7 13 13 C 1.54064 * 112.28583 * 318.29700 * 12 11 9 14 14 N 1.44270 * 111.98539 * 318.91678 * 13 12 11 15 15 C 1.46897 * 111.00146 * 219.31093 * 14 13 12 16 16 C 1.53001 * 109.46842 * 303.29536 * 15 14 13 17 17 C 1.53006 * 109.46845 * 182.21665 * 16 15 14 18 18 O 1.42907 * 109.46943 * 179.97438 * 17 16 15 19 19 C 1.47800 * 109.46442 * 96.43408 * 14 13 12 20 20 C 1.45869 * 112.91895 * 276.74438 * 19 14 13 21 21 H 0.97003 * 119.99497 * 0.02562 * 1 2 3 22 22 H 1.09008 * 108.77092 * 332.87912 * 11 9 7 23 23 H 1.08995 * 108.77709 * 91.04542 * 11 9 7 24 24 H 1.09000 * 108.92271 * 79.02168 * 12 11 9 25 25 H 1.09002 * 108.92069 * 197.67181 * 12 11 9 26 26 H 1.08997 * 108.97992 * 198.27190 * 13 12 11 27 27 H 1.09002 * 108.98028 * 79.56001 * 13 12 11 28 28 H 1.09005 * 109.47188 * 183.30016 * 15 14 13 29 29 H 1.08997 * 109.47559 * 63.29720 * 15 14 13 30 30 H 1.08996 * 109.47100 * 62.22090 * 16 15 14 31 31 H 1.08994 * 109.47443 * 302.21593 * 16 15 14 32 32 H 1.08994 * 109.47041 * 300.00174 * 17 16 15 33 33 H 1.08996 * 109.46924 * 60.00318 * 17 16 15 34 34 H 0.96693 * 113.99895 * 180.02562 * 18 17 16 35 35 H 1.08994 * 108.79446 * 37.63019 * 19 14 13 36 36 H 1.09001 * 108.79634 * 155.97151 * 19 14 13 37 37 H 1.08996 * 109.05641 * 181.87348 * 20 19 14 38 38 H 1.09002 * 109.05144 * 300.84964 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6199 -2.5565 0.8874 11 6 0.3973 -2.5883 -1.2353 12 6 -0.9090 -3.3782 -1.0110 13 6 -0.6884 -4.6420 -0.1580 14 7 0.5268 -5.3313 -0.5180 15 6 0.3335 -6.7873 -0.4923 16 6 -0.1577 -7.2121 0.8931 17 6 -0.3061 -8.7343 0.9370 18 8 -0.7644 -9.1311 2.2311 19 6 1.6134 -4.9249 0.3977 20 6 2.2528 -3.6753 0.0011 21 1 -0.4849 0.8401 -0.0004 22 1 0.1453 -1.5790 -1.5611 23 1 0.9710 -3.0757 -2.0235 24 1 -1.6299 -2.7337 -0.5080 25 1 -1.3142 -3.6731 -1.9790 26 1 -1.5332 -5.3163 -0.2983 27 1 -0.6357 -4.3560 0.8925 28 1 1.2794 -7.2833 -0.7101 29 1 -0.4057 -7.0691 -1.2421 30 1 -1.1226 -6.7470 1.0948 31 1 0.5629 -6.8954 1.6470 32 1 -1.0268 -9.0509 0.1830 33 1 0.6588 -9.1993 0.7353 34 1 -0.8809 -10.0857 2.3314 35 1 1.2019 -4.8061 1.4000 36 1 2.3673 -5.7118 0.4193 37 1 3.0620 -3.4532 0.6968 38 1 2.6666 -3.7897 -1.0008 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260979525.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:09 Heat of formation + Delta-G solvation = -60.503810 kcal Electronic energy + Delta-G solvation = -16590.400981 eV Core-core repulsion = 14046.208132 eV Total energy + Delta-G solvation = -2544.192849 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.97963 -37.03978 -34.84339 -32.22088 -31.52857 -30.44419 -26.78928 -25.12662 -23.59556 -22.74916 -21.74413 -19.20205 -18.43588 -17.41286 -16.28540 -15.74770 -15.25190 -14.79152 -14.54882 -13.96414 -13.52670 -13.19698 -12.95633 -12.57248 -12.26026 -11.87418 -11.59282 -11.33974 -11.03755 -10.96260 -10.71262 -10.63567 -10.39764 -10.36371 -10.08921 -9.97611 -9.45918 -9.21480 -8.81854 -8.64789 -8.13245 -7.75966 -5.88551 -3.94180 3.35941 3.42552 3.45752 4.07035 4.44680 4.51743 4.88022 5.09472 5.30172 5.36942 5.41740 5.48538 5.58011 5.73798 5.78821 6.02779 6.06096 6.07865 6.29774 6.31401 6.56229 6.61953 6.70332 6.77130 6.86790 7.08638 7.23618 7.45229 7.48732 7.63445 7.72614 7.79555 7.90958 8.15894 8.29050 8.63642 9.11751 9.69418 11.17071 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.053123 B = 0.005763 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.948913 B = 4857.718040 C = 4999.254579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.059 3.941 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.052 0.948 9 C 0.055 3.945 10 H 0.021 0.979 11 C -0.087 4.087 12 C -0.102 4.102 13 C 0.059 3.941 14 N -0.519 5.519 15 C 0.060 3.940 16 C -0.161 4.161 17 C 0.080 3.920 18 O -0.576 6.576 19 C 0.066 3.934 20 C -0.114 4.114 21 H 0.257 0.743 22 H 0.076 0.924 23 H 0.026 0.974 24 H 0.056 0.944 25 H 0.036 0.964 26 H 0.047 0.953 27 H 0.039 0.961 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.376 0.624 35 H 0.030 0.970 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.258 -14.981 -0.038 15.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.549 4.549 8 H 0.070 0.930 9 C 0.037 3.963 10 H 0.039 0.961 11 C -0.125 4.125 12 C -0.140 4.140 13 C -0.069 4.069 14 N -0.242 5.242 15 C -0.069 4.069 16 C -0.200 4.200 17 C 0.001 3.999 18 O -0.381 6.381 19 C -0.061 4.061 20 C -0.152 4.152 21 H 0.067 0.933 22 H 0.094 0.906 23 H 0.045 0.955 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.222 0.778 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.248 -14.048 -0.434 14.110 hybrid contribution 0.152 0.069 0.722 0.741 sum -1.096 -13.979 0.288 14.025 Atomic orbital electron populations 1.69968 1.05748 1.26076 1.50880 1.24952 0.94814 0.98814 0.95548 0.86693 0.79919 0.83960 0.77984 1.20824 1.21402 1.20069 1.21313 0.92820 0.90836 1.49958 0.92957 1.18413 0.92343 0.90945 0.94609 0.96124 1.21169 0.93275 0.99289 0.98789 1.21900 1.00168 0.94511 0.97461 1.21938 0.90485 0.95890 0.98595 1.61883 1.06708 1.03296 1.52313 1.22252 1.01008 0.89377 0.94270 1.22363 1.03138 0.94149 1.00360 1.22164 0.97495 0.96040 0.84173 1.86524 1.89831 1.28164 1.33606 1.21085 0.93200 0.98300 0.93517 1.20725 0.99238 0.94815 1.00446 0.93278 0.90598 0.95534 0.92515 0.94492 0.93462 0.94298 0.91046 0.90998 0.91021 0.91092 0.93750 0.93768 0.77806 0.95154 0.93329 0.93018 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 11.64 55.43 0.65 -24.98 16 2 C 0.06 1.67 5.04 -17.82 -0.09 1.58 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.26 8.45 -34.44 -0.29 -14.55 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.06 1.39 1.77 -92.25 -0.16 1.23 16 10 H 0.02 0.57 7.17 -51.93 -0.37 0.20 16 11 C -0.09 -2.12 4.62 -27.32 -0.13 -2.24 16 12 C -0.10 -2.14 6.15 -25.50 -0.16 -2.30 16 13 C 0.06 1.09 4.04 -4.67 -0.02 1.07 16 14 N -0.52 -8.98 4.45 -239.56 -1.07 -10.04 16 15 C 0.06 0.80 5.05 -3.83 -0.02 0.78 16 16 C -0.16 -2.09 5.03 -26.73 -0.13 -2.22 16 17 C 0.08 0.83 7.05 37.16 0.26 1.09 16 18 O -0.58 -6.48 13.66 -35.23 -0.48 -6.96 16 19 C 0.07 1.19 3.98 -6.70 -0.03 1.17 16 20 C -0.11 -2.44 4.87 -29.31 -0.14 -2.58 16 21 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 22 H 0.08 2.09 5.91 -51.92 -0.31 1.78 16 23 H 0.03 0.63 7.38 -51.93 -0.38 0.24 16 24 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.76 6.84 -51.93 -0.36 0.41 16 27 H 0.04 0.77 6.51 -51.93 -0.34 0.43 16 28 H 0.07 0.87 7.91 -51.93 -0.41 0.46 16 29 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 30 H 0.07 1.02 6.77 -51.93 -0.35 0.67 16 31 H 0.07 1.02 7.04 -51.93 -0.37 0.65 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.38 2.28 9.12 45.56 0.42 2.70 16 35 H 0.03 0.57 6.84 -51.93 -0.36 0.21 16 36 H 0.05 0.78 7.66 -51.93 -0.40 0.38 16 37 H 0.05 1.09 8.01 -51.93 -0.42 0.67 16 38 H 0.05 1.12 7.58 -51.93 -0.39 0.73 16 LS Contribution 288.14 15.07 4.34 4.34 Total: -1.00 -30.21 288.14 -8.17 -38.38 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.68 Total: -0.32 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -0.91 Total: -16.98 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: -0.42 Total: -35.02 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.48 Total: -6.96 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.21 -8.17 -38.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260979525.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.123 kcal (2) G-P(sol) polarization free energy of solvation -30.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds