Wall clock time and date at job start Mon Mar 30 2020 03:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00073 * 2 1 4 4 H 1.48493 * 109.47332 * 270.00300 * 3 2 1 5 5 H 1.48509 * 109.46899 * 29.99995 * 3 2 1 6 6 H 1.48497 * 109.47392 * 149.99706 * 3 2 1 7 7 C 1.37877 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99717 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00119 * 359.97438 * 7 2 1 10 10 H 1.09007 * 108.82602 * 61.49929 * 9 7 2 11 11 C 1.54164 * 108.77446 * 303.03686 * 9 7 2 12 12 C 1.53822 * 111.97247 * 197.72917 * 11 9 7 13 13 C 1.50816 * 111.61982 * 319.04260 * 12 11 9 14 14 N 1.47636 * 108.03769 * 95.06165 * 13 12 11 15 15 C 1.46894 * 110.99781 * 150.32598 * 14 13 12 16 16 C 1.53003 * 109.47121 * 66.04606 * 15 14 13 17 17 C 1.53002 * 109.46945 * 179.97438 * 16 15 14 18 18 O 1.42897 * 109.46704 * 179.97438 * 17 16 15 19 19 C 1.39783 * 114.76457 * 277.18537 * 14 13 12 20 20 C 1.50754 * 108.85607 * 179.97438 * 9 7 2 21 21 H 0.96995 * 120.00154 * 0.02562 * 1 2 3 22 22 H 1.09000 * 108.97887 * 77.09356 * 11 9 7 23 23 H 1.09001 * 108.98349 * 318.37320 * 11 9 7 24 24 H 1.08999 * 109.04866 * 198.49015 * 12 11 9 25 25 H 1.08999 * 109.04826 * 79.59732 * 12 11 9 26 26 H 1.09001 * 109.74629 * 214.68968 * 13 12 11 27 27 H 1.09000 * 109.74629 * 335.37428 * 13 12 11 28 28 H 1.09003 * 109.46654 * 186.04187 * 15 14 13 29 29 H 1.08997 * 109.47420 * 306.04430 * 15 14 13 30 30 H 1.08995 * 109.47239 * 299.99960 * 16 15 14 31 31 H 1.09011 * 109.46940 * 59.99776 * 16 15 14 32 32 H 1.08994 * 109.47434 * 299.99868 * 17 16 15 33 33 H 1.09002 * 109.46853 * 60.00686 * 17 16 15 34 34 H 0.96700 * 114.00232 * 180.02562 * 18 17 16 35 35 H 1.08994 * 109.02247 * 182.86870 * 19 14 13 36 36 H 1.08997 * 109.01776 * 301.76867 * 19 14 13 37 37 H 1.09002 * 109.54589 * 93.85142 * 20 9 7 38 38 H 1.09001 * 109.54526 * 333.58707 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 1 0.6485 -2.5582 -0.9047 11 6 0.3143 -2.5302 1.2257 12 6 -0.1568 -3.9572 1.5539 13 6 -0.4898 -4.7336 0.3045 14 7 0.7005 -5.5197 -0.0761 15 6 0.3152 -6.7560 -0.7695 16 6 -0.3347 -6.4074 -2.1101 17 6 -0.7355 -7.6951 -2.8327 18 8 -1.3430 -7.3695 -4.0844 19 6 1.6596 -4.8131 -0.8074 20 6 2.2430 -3.6344 0.0014 21 1 -0.4850 0.8400 -0.0004 22 1 -0.5567 -1.9076 1.0214 23 1 0.8438 -2.1246 2.0878 24 1 -1.0433 -3.9027 2.1858 25 1 0.6334 -4.4769 2.0958 26 1 -1.3269 -5.4039 0.4996 27 1 -0.7494 -4.0444 -0.4991 28 1 1.2014 -7.3664 -0.9432 29 1 -0.3939 -7.3112 -0.1555 30 1 -1.2208 -5.7969 -1.9365 31 1 0.3744 -5.8522 -2.7242 32 1 0.1508 -8.3053 -3.0064 33 1 -1.4445 -8.2506 -2.2188 34 1 -1.6233 -8.1396 -4.5978 35 1 2.4682 -5.4910 -1.0809 36 1 1.1988 -4.4253 -1.7158 37 1 2.4318 -3.9539 1.0263 38 1 3.1753 -3.3039 -0.4564 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260979526.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:10 Heat of formation + Delta-G solvation = -83.230477 kcal Electronic energy + Delta-G solvation = -16621.085880 eV Core-core repulsion = 14075.907529 eV Total energy + Delta-G solvation = -2545.178351 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.55941 -37.99035 -36.51841 -34.12911 -32.92442 -32.00866 -28.25039 -26.82468 -25.24339 -24.31894 -23.02139 -20.86464 -20.11607 -18.46498 -18.25412 -16.76281 -16.63200 -16.57567 -15.95569 -15.60599 -15.18957 -14.66116 -14.32656 -14.10443 -13.70975 -13.49038 -13.16545 -13.03897 -12.78524 -12.48638 -12.31548 -12.14436 -12.00554 -11.81946 -11.65641 -11.40069 -11.15231 -10.87801 -10.84747 -10.56868 -10.34079 -9.06781 -8.07775 -6.20881 1.38803 1.39203 1.49799 2.42650 3.07617 3.18386 3.39219 3.94278 4.10302 4.22697 4.28933 4.34929 4.40782 4.50051 4.61660 4.64138 4.68133 4.74161 4.80657 4.89866 5.00012 5.07667 5.11902 5.22668 5.29420 5.34436 5.41837 5.49148 5.63362 5.71386 6.05426 6.23415 6.32846 6.41292 6.55266 6.93181 6.93766 7.46578 8.96534 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035921 B = 0.006291 C = 0.006002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.293543 B = 4449.568859 C = 4664.245989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.010 3.990 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.538 4.538 8 H 0.051 0.949 9 C 0.047 3.953 10 H -0.018 1.018 11 C -0.090 4.090 12 C -0.110 4.110 13 C 0.077 3.923 14 N -0.547 5.547 15 C 0.067 3.933 16 C -0.159 4.159 17 C 0.084 3.916 18 O -0.604 6.604 19 C 0.083 3.917 20 C -0.097 4.097 21 H 0.258 0.742 22 H 0.044 0.956 23 H 0.017 0.983 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.013 0.987 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.397 0.603 35 H 0.081 0.919 36 H -0.002 1.002 37 H 0.059 0.941 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.235 -16.294 -1.993 16.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.188 4.188 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.576 4.576 8 H 0.069 0.931 9 C 0.029 3.971 10 H 0.000 1.000 11 C -0.129 4.129 12 C -0.148 4.148 13 C -0.050 4.050 14 N -0.270 5.270 15 C -0.060 4.060 16 C -0.198 4.198 17 C 0.006 3.994 18 O -0.412 6.412 19 C -0.047 4.047 20 C -0.135 4.135 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.036 0.964 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.032 0.968 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.247 0.753 35 H 0.099 0.901 36 H 0.016 0.984 37 H 0.077 0.923 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.028 -15.665 -1.366 15.758 hybrid contribution -0.224 1.262 -1.089 1.681 sum -1.252 -14.404 -2.455 14.665 Atomic orbital electron populations 1.70080 1.07194 1.26851 1.51630 1.25781 0.95685 1.02432 0.94952 0.85650 0.78858 0.79596 0.78137 1.20316 1.20876 1.19162 1.21828 0.92912 0.92591 1.50275 0.93088 1.18476 0.92824 0.92727 0.93105 1.00024 1.21736 0.99352 0.94655 0.97139 1.21428 1.00653 0.95468 0.97258 1.21678 0.91603 0.95204 0.96534 1.59206 1.13065 1.08179 1.46513 1.22228 1.00968 0.91559 0.91237 1.22228 1.00572 0.98556 0.98486 1.22135 0.97256 0.95661 0.84388 1.86481 1.81991 1.39024 1.33739 1.20880 0.94704 0.95422 0.93685 1.21466 0.98019 0.94444 0.99597 0.93278 0.93739 0.96388 0.92184 0.91381 0.89449 0.96810 0.89008 0.88722 0.93475 0.93464 0.91757 0.91653 0.75294 0.90121 0.98402 0.92257 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.23 11.32 21.45 0.24 -54.99 16 2 C 0.01 0.57 5.28 84.66 0.45 1.01 16 3 Si 0.95 45.21 29.54 68.60 2.03 47.23 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 5 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.54 -30.97 8.33 25.60 0.21 -30.76 16 8 H 0.05 2.88 7.44 -2.90 -0.02 2.86 16 9 C 0.05 2.46 1.65 -11.88 -0.02 2.44 16 10 H -0.02 -1.08 6.58 -2.38 -0.02 -1.10 16 11 C -0.09 -4.50 4.64 31.27 0.15 -4.35 16 12 C -0.11 -4.24 5.41 30.16 0.16 -4.07 16 13 C 0.08 2.70 4.30 85.45 0.37 3.06 16 14 N -0.55 -17.43 4.12 -913.29 -3.76 -21.19 16 15 C 0.07 1.58 5.15 86.31 0.44 2.03 16 16 C -0.16 -4.17 5.04 30.60 0.15 -4.01 16 17 C 0.08 1.60 7.05 71.98 0.51 2.11 16 18 O -0.60 -13.48 13.66 -148.98 -2.03 -15.52 16 19 C 0.08 2.99 4.43 88.06 0.39 3.38 16 20 C -0.10 -4.20 5.14 30.34 0.16 -4.04 16 21 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 22 H 0.04 2.48 6.50 -2.39 -0.02 2.46 16 23 H 0.02 0.91 7.97 -2.39 -0.02 0.89 16 24 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 25 H 0.07 2.51 7.27 -2.39 -0.02 2.50 16 26 H 0.09 2.53 7.67 -2.39 -0.02 2.52 16 27 H 0.01 0.58 6.56 -2.39 -0.02 0.56 16 28 H 0.09 1.81 7.99 -2.39 -0.02 1.79 16 29 H 0.09 1.83 7.91 -2.39 -0.02 1.81 16 30 H 0.05 1.44 7.31 -2.39 -0.02 1.42 16 31 H 0.05 1.46 6.66 -2.38 -0.02 1.45 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.40 4.47 9.12 -74.06 -0.68 3.80 16 35 H 0.08 2.48 7.89 -2.39 -0.02 2.46 16 36 H 0.00 -0.08 6.08 -2.39 -0.01 -0.10 16 37 H 0.06 2.48 7.11 -2.39 -0.02 2.47 16 38 H 0.05 2.17 7.50 -2.39 -0.02 2.15 16 Total: -1.00 -67.70 286.67 -0.20 -67.90 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.35 Total: 9.78 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: 2.97 Total: -33.21 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -3.52 Total: -76.18 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -2.03 Total: -15.52 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -67.70 -0.20 -67.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260979526.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.330 kcal (2) G-P(sol) polarization free energy of solvation -67.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds