Wall clock time and date at job start Mon Mar 30 2020 02:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34641 * 117.00093 * 2 1 4 4 O 1.21513 * 119.99732 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00117 * 180.02562 * 3 2 1 6 6 C 1.46506 * 120.00180 * 359.97438 * 5 3 2 7 7 C 1.46502 * 119.99869 * 179.97438 * 5 3 2 8 8 H 1.09007 * 110.01336 * 181.39214 * 7 5 3 9 9 C 1.54262 * 110.03260 * 302.82982 * 7 5 3 10 10 C 1.55032 * 104.27898 * 142.80678 * 9 7 5 11 11 C 1.54888 * 102.68007 * 322.23171 * 10 9 7 12 12 H 1.08998 * 110.48795 * 279.02897 * 11 10 9 13 13 C 1.50706 * 110.48457 * 156.52256 * 11 10 9 14 14 H 1.07997 * 119.99562 * 243.24550 * 13 11 10 15 15 C 1.37877 * 120.00159 * 63.24092 * 13 11 10 16 16 N 1.31510 * 119.99756 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00022 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47308 * 89.99543 * 17 15 13 19 19 H 1.48501 * 109.46878 * 209.99986 * 17 15 13 20 20 H 1.48507 * 109.46947 * 329.99669 * 17 15 13 21 21 C 1.53871 * 110.03335 * 60.00175 * 7 5 3 22 22 H 1.08999 * 109.46989 * 299.99862 * 1 2 3 23 23 H 1.09000 * 109.47308 * 59.99884 * 1 2 3 24 24 H 1.09007 * 109.47365 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46846 * 270.00597 * 6 5 3 26 26 H 1.08999 * 109.46660 * 30.00100 * 6 5 3 27 27 H 1.09001 * 109.46961 * 149.99902 * 6 5 3 28 28 H 1.08997 * 110.48611 * 261.57510 * 9 7 5 29 29 H 1.08998 * 110.48889 * 24.21856 * 9 7 5 30 30 H 1.09004 * 110.87090 * 203.90512 * 10 9 7 31 31 H 1.08989 * 110.70187 * 80.48538 * 10 9 7 32 32 H 0.96998 * 119.99911 * 180.02562 * 16 15 13 33 33 H 1.08994 * 110.03564 * 121.42818 * 21 7 5 34 34 H 1.08998 * 110.07354 * 0.02562 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.2071 0.0415 -0.0005 7 6 4.0742 2.5755 -0.0011 8 1 5.1559 2.4431 -0.0263 9 6 3.6135 3.4028 -1.2189 10 6 3.5281 4.8555 -0.6842 11 6 2.9777 4.6580 0.7500 12 1 1.8961 4.5249 0.7285 13 6 3.3462 5.8304 1.6224 14 1 3.9880 5.6854 2.4788 15 6 2.8641 7.0879 1.3271 16 7 2.0823 7.2643 0.2845 17 14 3.3216 8.5411 2.4081 18 1 4.5654 9.1685 1.8938 19 1 2.2205 9.5374 2.3900 20 1 3.5424 8.0726 3.7999 21 6 3.6699 3.3736 1.2508 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 4.4052 -0.2630 1.0271 26 1 3.6583 -0.7480 -0.5140 27 1 5.1512 0.2215 -0.5148 28 1 4.3442 3.3346 -2.0249 29 1 2.6347 3.0662 -1.5606 30 1 2.8391 5.4502 -1.2840 31 1 4.5159 5.3154 -0.6590 32 1 1.7434 8.1490 0.0766 33 1 4.5554 3.6293 1.8327 34 1 2.9792 2.7902 1.8596 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261058652.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:01 Heat of formation + Delta-G solvation = -80.872863 kcal Electronic energy + Delta-G solvation = -16606.756852 eV Core-core repulsion = 13925.847641 eV Total energy + Delta-G solvation = -2680.909212 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.27942 -37.70426 -35.41468 -34.62355 -32.06882 -28.17774 -27.76225 -27.35949 -25.62770 -23.84397 -21.19387 -19.52029 -18.85842 -17.30629 -16.43818 -16.24143 -16.12329 -14.95754 -14.43840 -14.00793 -13.79492 -13.19052 -12.83771 -12.73973 -12.36471 -12.04485 -11.83625 -11.53233 -10.98116 -10.92165 -10.60640 -10.56960 -10.39467 -10.29861 -9.86154 -9.55133 -9.34519 -9.09508 -8.56739 -8.23184 -8.19243 -5.85165 -3.87790 2.53246 3.28279 3.38067 3.44529 3.47845 4.23579 4.55099 5.22597 5.30869 5.39469 5.44319 5.45637 5.52598 5.64304 5.78873 5.79804 5.93545 6.24187 6.45786 6.53455 6.71517 6.77883 6.90092 7.08345 7.20627 7.45482 7.55641 7.75601 7.87822 8.08404 8.32388 8.63492 8.77250 9.16526 9.74686 11.23875 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.040377 B = 0.007337 C = 0.006901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.293421 B = 3815.529664 C = 4056.696224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.382 6.382 3 C 0.636 3.364 4 O -0.538 6.538 5 N -0.595 5.595 6 C 0.086 3.914 7 C 0.158 3.842 8 H 0.085 0.915 9 C -0.139 4.139 10 C -0.093 4.093 11 C 0.057 3.943 12 H 0.043 0.957 13 C -0.513 4.513 14 H 0.052 0.948 15 C 0.061 3.939 16 N -0.888 5.888 17 Si 0.886 3.114 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.276 1.276 21 C -0.119 4.119 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.095 0.905 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.257 0.743 33 H 0.055 0.945 34 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.035 -14.614 -2.233 14.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.297 6.297 3 C 0.389 3.611 4 O -0.423 6.423 5 N -0.336 5.336 6 C -0.058 4.058 7 C 0.057 3.943 8 H 0.103 0.897 9 C -0.177 4.177 10 C -0.131 4.131 11 C 0.038 3.962 12 H 0.061 0.939 13 C -0.552 4.552 14 H 0.070 0.930 15 C -0.140 4.140 16 N -0.527 5.527 17 Si 0.714 3.286 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.201 1.201 21 C -0.158 4.158 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.113 0.887 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.660 -14.179 -2.321 14.464 hybrid contribution 0.162 0.785 0.566 0.981 sum 1.822 -13.394 -1.755 13.631 Atomic orbital electron populations 1.23078 0.75232 1.02629 1.02793 1.86193 1.23592 1.32275 1.87671 1.18164 0.83443 0.82001 0.77490 1.91121 1.63915 1.33914 1.53397 1.47025 1.01955 1.08220 1.76448 1.21705 0.95947 0.86547 1.01563 1.22039 0.94637 0.79339 0.98257 0.89676 1.22891 1.00535 0.98891 0.95399 1.22364 0.99994 0.91222 0.99568 1.19355 0.96287 0.89337 0.91171 0.93892 1.21282 1.29751 0.92708 1.11440 0.92979 1.24975 0.95120 0.98671 0.95224 1.69986 1.33586 1.22237 1.26855 0.86697 0.77929 0.82836 0.81098 1.20838 1.21383 1.20087 1.22600 0.99893 0.98483 0.94800 0.91961 0.92072 0.88663 0.93001 0.91079 0.91244 0.93746 0.91134 0.91331 0.93729 0.93288 0.92623 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.70 10.56 101.05 1.07 1.77 16 2 O -0.38 -5.90 9.39 -40.33 -0.38 -6.28 16 3 C 0.64 11.88 7.26 54.05 0.39 12.27 16 4 O -0.54 -12.18 12.14 -19.28 -0.23 -12.42 16 5 N -0.60 -9.99 2.83 -178.44 -0.50 -10.49 16 6 C 0.09 1.01 10.42 59.85 0.62 1.63 16 7 C 0.16 2.95 3.36 -66.82 -0.22 2.72 16 8 H 0.09 1.35 7.82 -51.92 -0.41 0.94 16 9 C -0.14 -2.84 6.07 -25.00 -0.15 -2.99 16 10 C -0.09 -2.30 5.69 -24.66 -0.14 -2.44 16 11 C 0.06 1.52 2.31 -90.11 -0.21 1.31 16 12 H 0.04 1.31 7.32 -51.93 -0.38 0.93 16 13 C -0.51 -14.78 8.48 -34.44 -0.29 -15.08 16 14 H 0.05 1.47 7.56 -52.49 -0.40 1.07 16 15 C 0.06 1.78 5.34 -17.82 -0.10 1.68 16 16 N -0.89 -26.77 12.14 55.43 0.67 -26.10 16 17 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C -0.12 -2.66 5.35 -25.62 -0.14 -2.79 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.77 7.37 -51.93 -0.38 0.38 16 27 H 0.07 0.68 7.92 -51.93 -0.41 0.27 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.56 6.05 -51.93 -0.31 1.25 16 30 H 0.07 1.86 7.46 -51.93 -0.39 1.48 16 31 H 0.04 1.09 8.05 -51.94 -0.42 0.67 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.06 1.20 7.67 -51.93 -0.40 0.80 16 34 H 0.05 1.08 7.15 -51.93 -0.37 0.70 16 LS Contribution 275.57 15.07 4.15 4.15 Total: -1.00 -32.88 275.57 -5.59 -38.47 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -5.11 Total: -2.44 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 0.83 Total: -1.91 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.17 Total: -36.59 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.61 Total: -18.70 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.88 -5.59 -38.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058652.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.402 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds