Wall clock time and date at job start Mon Mar 30 2020 02:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34641 * 117.00093 * 2 1 4 4 O 1.21513 * 119.99732 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00117 * 180.02562 * 3 2 1 6 6 C 1.46506 * 120.00180 * 359.97438 * 5 3 2 7 7 C 1.46502 * 119.99869 * 179.97438 * 5 3 2 8 8 H 1.09007 * 110.01336 * 181.39214 * 7 5 3 9 9 C 1.54262 * 110.03260 * 302.82982 * 7 5 3 10 10 C 1.55032 * 104.27898 * 142.80678 * 9 7 5 11 11 C 1.54888 * 102.68007 * 322.23171 * 10 9 7 12 12 H 1.08998 * 110.48795 * 279.02897 * 11 10 9 13 13 C 1.50706 * 110.48457 * 156.52256 * 11 10 9 14 14 H 1.07997 * 119.99562 * 243.24550 * 13 11 10 15 15 C 1.37877 * 120.00159 * 63.24092 * 13 11 10 16 16 N 1.31510 * 119.99756 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00022 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47308 * 89.99543 * 17 15 13 19 19 H 1.48501 * 109.46878 * 209.99986 * 17 15 13 20 20 H 1.48507 * 109.46947 * 329.99669 * 17 15 13 21 21 C 1.53871 * 110.03335 * 60.00175 * 7 5 3 22 22 H 1.08999 * 109.46989 * 299.99862 * 1 2 3 23 23 H 1.09000 * 109.47308 * 59.99884 * 1 2 3 24 24 H 1.09007 * 109.47365 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46846 * 270.00597 * 6 5 3 26 26 H 1.08999 * 109.46660 * 30.00100 * 6 5 3 27 27 H 1.09001 * 109.46961 * 149.99902 * 6 5 3 28 28 H 1.08997 * 110.48611 * 261.57510 * 9 7 5 29 29 H 1.08998 * 110.48889 * 24.21856 * 9 7 5 30 30 H 1.09004 * 110.87090 * 203.90512 * 10 9 7 31 31 H 1.08989 * 110.70187 * 80.48538 * 10 9 7 32 32 H 0.96998 * 119.99911 * 180.02562 * 16 15 13 33 33 H 1.08994 * 110.03564 * 121.42818 * 21 7 5 34 34 H 1.08998 * 110.07354 * 0.02562 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.2071 0.0415 -0.0005 7 6 4.0742 2.5755 -0.0011 8 1 5.1559 2.4431 -0.0263 9 6 3.6135 3.4028 -1.2189 10 6 3.5281 4.8555 -0.6842 11 6 2.9777 4.6580 0.7500 12 1 1.8961 4.5249 0.7285 13 6 3.3462 5.8304 1.6224 14 1 3.9880 5.6854 2.4788 15 6 2.8641 7.0879 1.3271 16 7 2.0823 7.2643 0.2845 17 14 3.3216 8.5411 2.4081 18 1 4.5654 9.1685 1.8938 19 1 2.2205 9.5374 2.3900 20 1 3.5424 8.0726 3.7999 21 6 3.6699 3.3736 1.2508 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 4.4052 -0.2630 1.0271 26 1 3.6583 -0.7480 -0.5140 27 1 5.1512 0.2215 -0.5148 28 1 4.3442 3.3346 -2.0249 29 1 2.6347 3.0662 -1.5606 30 1 2.8391 5.4502 -1.2840 31 1 4.5159 5.3154 -0.6590 32 1 1.7434 8.1490 0.0766 33 1 4.5554 3.6293 1.8327 34 1 2.9792 2.7902 1.8596 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261058652.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:01 Heat of formation + Delta-G solvation = -102.842584 kcal Electronic energy + Delta-G solvation = -16607.709531 eV Core-core repulsion = 13925.847641 eV Total energy + Delta-G solvation = -2681.861890 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.68189 -39.21543 -36.95575 -36.17006 -34.13757 -30.06471 -29.28992 -28.55185 -26.93907 -25.82295 -22.68652 -21.30575 -20.56435 -18.73610 -18.33370 -17.74179 -17.48491 -16.56084 -16.42082 -15.41971 -15.06267 -14.62308 -14.58799 -14.27184 -13.73369 -13.48225 -13.18404 -12.95863 -12.89210 -12.66082 -12.47034 -12.42199 -12.09570 -11.70359 -11.62000 -11.38029 -11.18061 -11.00594 -10.70377 -10.41055 -9.62783 -8.06824 -6.18445 1.27049 1.40484 1.41959 1.52296 1.86011 2.45199 3.07153 3.22232 3.93018 4.04617 4.21803 4.37036 4.39398 4.42291 4.66747 4.69502 4.73734 4.80069 4.94879 4.98199 5.03407 5.08061 5.27636 5.31339 5.43009 5.46397 5.66879 5.78872 6.00444 6.11898 6.41462 6.44721 6.95424 7.38994 7.48583 9.01700 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.040377 B = 0.007337 C = 0.006901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.293421 B = 3815.529664 C = 4056.696224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 O -0.373 6.373 3 C 0.629 3.371 4 O -0.590 6.590 5 N -0.593 5.593 6 C 0.080 3.920 7 C 0.167 3.833 8 H 0.132 0.868 9 C -0.127 4.127 10 C -0.087 4.087 11 C 0.051 3.949 12 H -0.012 1.012 13 C -0.534 4.534 14 H 0.055 0.945 15 C 0.006 3.994 16 N -0.922 5.922 17 Si 0.957 3.043 18 H -0.270 1.270 19 H -0.287 1.287 20 H -0.268 1.268 21 C -0.111 4.111 22 H 0.049 0.951 23 H 0.053 0.947 24 H 0.142 0.858 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.029 0.971 31 H 0.045 0.955 32 H 0.258 0.742 33 H 0.065 0.935 34 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.109 -16.211 -1.986 16.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 O -0.287 6.287 3 C 0.383 3.617 4 O -0.480 6.480 5 N -0.333 5.333 6 C -0.061 4.061 7 C 0.066 3.934 8 H 0.149 0.851 9 C -0.166 4.166 10 C -0.125 4.125 11 C 0.033 3.967 12 H 0.006 0.994 13 C -0.573 4.573 14 H 0.073 0.927 15 C -0.192 4.192 16 N -0.562 5.562 17 Si 0.782 3.218 18 H -0.195 1.195 19 H -0.213 1.213 20 H -0.192 1.192 21 C -0.149 4.149 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.160 0.840 25 H 0.083 0.917 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 3.757 -15.836 -2.070 16.407 hybrid contribution -0.572 1.226 0.493 1.440 sum 3.184 -14.611 -1.576 15.036 Atomic orbital electron populations 1.23399 0.73599 1.05358 1.01910 1.86203 1.25115 1.30253 1.87152 1.18501 0.84156 0.82127 0.76915 1.91113 1.65318 1.35834 1.55692 1.47061 1.01631 1.09215 1.75388 1.22036 0.96541 0.84441 1.03082 1.21887 0.96933 0.79763 0.94852 0.85073 1.22743 1.00639 0.95921 0.97252 1.22130 0.98552 0.93778 0.98052 1.19238 0.93527 0.91296 0.92670 0.99399 1.21691 1.29863 0.93835 1.11865 0.92702 1.25858 0.94971 1.01755 0.96582 1.70156 1.34626 1.22855 1.28563 0.85578 0.77881 0.78951 0.79365 1.19524 1.21263 1.19235 1.22430 0.99272 0.96694 0.96515 0.93177 0.92776 0.83988 0.91704 0.89958 0.88311 0.90124 0.93349 0.95192 0.93653 0.93326 0.91599 0.95065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.21 10.56 113.37 1.20 2.41 16 2 O -0.37 -11.01 9.39 -55.50 -0.52 -11.53 16 3 C 0.63 23.24 7.26 129.79 0.94 24.18 16 4 O -0.59 -27.82 12.14 19.80 0.24 -27.58 16 5 N -0.59 -18.51 2.83 -948.87 -2.68 -21.19 16 6 C 0.08 1.55 10.42 127.77 1.33 2.88 16 7 C 0.17 5.85 3.36 45.71 0.15 6.00 16 8 H 0.13 3.48 7.82 -2.38 -0.02 3.47 16 9 C -0.13 -5.10 6.07 31.72 0.19 -4.91 16 10 C -0.09 -4.38 5.69 31.93 0.18 -4.20 16 11 C 0.05 2.84 2.31 -10.46 -0.02 2.82 16 12 H -0.01 -0.81 7.32 -2.39 -0.02 -0.82 16 13 C -0.53 -31.45 8.48 25.60 0.22 -31.23 16 14 H 0.05 3.11 7.56 -2.91 -0.02 3.09 16 15 C 0.01 0.38 5.34 84.66 0.45 0.83 16 16 N -0.92 -57.70 12.14 21.45 0.26 -57.44 16 17 Si 0.96 45.72 29.54 68.60 2.03 47.75 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 19 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 21 C -0.11 -4.90 5.35 31.32 0.17 -4.73 16 22 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.14 1.98 8.14 -2.38 -0.02 1.96 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.08 1.44 7.37 -2.39 -0.02 1.43 16 27 H 0.10 1.38 7.92 -2.39 -0.02 1.36 16 28 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.05 2.17 6.05 -2.39 -0.01 2.15 16 30 H 0.03 1.70 7.46 -2.38 -0.02 1.68 16 31 H 0.04 2.23 8.05 -2.39 -0.02 2.22 16 32 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.07 2.74 7.67 -2.39 -0.02 2.72 16 34 H 0.03 1.44 7.15 -2.39 -0.02 1.43 16 Total: -1.00 -75.69 275.57 5.21 -70.49 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 1.07 Total: 5.45 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 4.81 Total: -5.95 kcal Atomic # 7 Polarization: -76.21 SS G_CDS: -2.42 Total: -78.63 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -0.28 Total: -39.11 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -75.69 5.21 -70.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058652.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.357 kcal (2) G-P(sol) polarization free energy of solvation -75.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds