Wall clock time and date at job start Mon Mar 30 2020 02:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34630 * 117.00046 * 2 1 4 4 O 1.21516 * 120.00250 * 0.02562 * 3 2 1 5 5 N 1.34784 * 120.00065 * 180.02562 * 3 2 1 6 6 C 1.46493 * 119.99864 * 179.72923 * 5 3 2 7 7 C 1.53001 * 109.47084 * 180.02562 * 6 5 3 8 8 H 1.09000 * 110.01274 * 305.05873 * 7 6 5 9 9 C 1.54261 * 110.03567 * 66.45002 * 7 6 5 10 10 C 1.54886 * 104.19854 * 142.89754 * 9 7 6 11 11 C 1.54887 * 102.74756 * 322.05773 * 10 9 7 12 12 H 1.09003 * 110.48822 * 279.26448 * 11 10 9 13 13 C 1.50697 * 110.48787 * 156.75082 * 11 10 9 14 14 H 1.08005 * 120.00500 * 241.45429 * 13 11 10 15 15 C 1.37881 * 119.99862 * 61.45494 * 13 11 10 16 16 N 1.31509 * 119.99955 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99916 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47413 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47032 * 120.00071 * 17 15 13 20 20 H 1.48501 * 109.46963 * 239.99793 * 17 15 13 21 21 C 1.53875 * 110.03339 * 183.62012 * 7 6 5 22 22 H 1.08998 * 109.47438 * 59.99585 * 1 2 3 23 23 H 1.09006 * 109.47276 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46821 * 299.99660 * 1 2 3 25 25 H 0.97000 * 119.99339 * 0.02562 * 5 3 2 26 26 H 1.09007 * 109.47196 * 299.99538 * 6 5 3 27 27 H 1.09006 * 109.47678 * 59.99732 * 6 5 3 28 28 H 1.09000 * 110.48628 * 261.57564 * 9 7 6 29 29 H 1.08998 * 110.48707 * 24.08375 * 9 7 6 30 30 H 1.09004 * 110.75516 * 80.37096 * 10 9 7 31 31 H 1.09002 * 110.75799 * 203.74482 * 10 9 7 32 32 H 0.97000 * 120.00358 * 180.02562 * 16 15 13 33 33 H 1.08997 * 110.03158 * 359.97438 * 21 7 6 34 34 H 1.08996 * 110.03308 * 121.42735 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0743 2.5754 -0.0065 7 6 5.5911 2.3749 -0.0065 8 1 5.8843 1.7464 0.8344 9 6 6.0384 1.7259 -1.3325 10 6 7.3943 2.4045 -1.6491 11 6 7.1577 3.8674 -1.1989 12 1 6.6151 4.4198 -1.9662 13 6 8.4691 4.5435 -0.8921 14 1 8.6667 4.9124 0.1036 15 6 9.4169 4.6912 -1.8826 16 7 9.1762 4.2425 -3.0951 17 14 11.0428 5.5286 -1.5022 18 1 11.0662 5.9392 -0.0753 19 1 12.1589 4.5845 -1.7635 20 1 11.1960 6.7273 -2.3653 21 6 6.3027 3.7366 0.0785 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.9374 0.4565 -0.0013 26 1 3.7813 3.1284 -0.8991 27 1 3.7815 3.1365 0.8810 28 1 6.1700 0.6513 -1.2059 29 1 5.3140 1.9303 -2.1208 30 1 8.1987 1.9480 -1.0723 31 1 7.6091 2.3588 -2.7168 32 1 9.8430 4.3460 -3.7919 33 1 5.5675 4.5402 0.1193 34 1 6.9420 3.7693 0.9607 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261059346.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:44 Heat of formation + Delta-G solvation = -125.261951 kcal Electronic energy + Delta-G solvation = -15693.170910 eV Core-core repulsion = 13010.336843 eV Total energy + Delta-G solvation = -2682.834067 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.47854 -39.41784 -37.57276 -35.93116 -34.33803 -30.91527 -29.78844 -28.43070 -26.51939 -24.84375 -22.41981 -21.17425 -20.72973 -19.40988 -18.53553 -17.94346 -17.58402 -16.57009 -16.37890 -15.71809 -15.12403 -15.00657 -14.78631 -14.22624 -13.94092 -13.47658 -13.27186 -12.96004 -12.93696 -12.64148 -12.34624 -11.92310 -11.78328 -11.70437 -11.52268 -11.37428 -11.26992 -11.01767 -10.74271 -10.42186 -10.21966 -8.08640 -6.18121 1.23340 1.41164 1.43517 1.54379 1.72354 2.45621 3.21933 3.34843 3.81315 3.93138 4.10475 4.37876 4.38809 4.54951 4.64678 4.65259 4.72805 4.83181 4.97028 5.07644 5.13020 5.21279 5.30702 5.33774 5.42424 5.48920 5.66943 5.71356 6.00449 6.06125 6.39344 6.43599 6.93880 7.28808 7.49335 8.99754 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.080625 B = 0.004692 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 347.205158 B = 5966.225956 C = 6090.925445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.374 6.374 3 C 0.641 3.359 4 O -0.612 6.612 5 N -0.692 5.692 6 C 0.153 3.847 7 C -0.086 4.086 8 H 0.095 0.905 9 C -0.114 4.114 10 C -0.094 4.094 11 C 0.033 3.967 12 H -0.007 1.007 13 C -0.530 4.530 14 H 0.054 0.946 15 C 0.010 3.990 16 N -0.920 5.920 17 Si 0.951 3.049 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.284 1.284 21 C -0.103 4.103 22 H 0.058 0.942 23 H 0.138 0.862 24 H 0.061 0.939 25 H 0.419 0.581 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.258 0.742 33 H 0.053 0.947 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.108 -10.007 6.554 17.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.288 6.288 3 C 0.394 3.606 4 O -0.504 6.504 5 N -0.352 5.352 6 C 0.031 3.969 7 C -0.105 4.105 8 H 0.113 0.887 9 C -0.152 4.152 10 C -0.132 4.132 11 C 0.015 3.985 12 H 0.011 0.989 13 C -0.569 4.569 14 H 0.072 0.928 15 C -0.188 4.188 16 N -0.560 5.560 17 Si 0.777 3.223 18 H -0.190 1.190 19 H -0.207 1.207 20 H -0.210 1.210 21 C -0.141 4.141 22 H 0.077 0.923 23 H 0.156 0.844 24 H 0.080 0.920 25 H 0.256 0.744 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.426 -9.558 6.397 16.931 hybrid contribution 1.105 0.480 -0.333 1.250 sum -11.320 -9.078 6.064 15.727 Atomic orbital electron populations 1.23501 0.72849 1.05650 1.02506 1.86252 1.25802 1.29880 1.86830 1.18367 0.83909 0.82231 0.76119 1.90973 1.65568 1.36247 1.57616 1.44682 1.02392 1.11374 1.76713 1.21471 0.91203 0.82366 1.01883 1.21915 0.91676 0.97868 0.99060 0.88663 1.22474 0.96897 0.99585 0.96196 1.22201 0.95039 0.96797 0.99158 1.19493 0.93347 0.93257 0.92452 0.98853 1.21655 1.01545 1.37550 0.96101 0.92793 1.25758 1.01754 0.96304 0.95010 1.70100 1.35720 1.47668 1.02465 0.85608 0.80048 0.78195 0.78418 1.19013 1.20686 1.20984 1.22119 0.97587 0.95335 0.99035 0.92317 0.84411 0.92015 0.74351 0.92641 0.91064 0.90339 0.92779 0.94475 0.94553 0.93273 0.92834 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.78 10.56 113.37 1.20 1.98 16 2 O -0.37 -8.54 10.61 -55.39 -0.59 -9.12 16 3 C 0.64 18.09 8.75 129.79 1.14 19.23 16 4 O -0.61 -21.50 16.13 19.79 0.32 -21.18 16 5 N -0.69 -17.20 5.39 -590.84 -3.18 -20.38 16 6 C 0.15 4.33 4.72 86.38 0.41 4.74 16 7 C -0.09 -2.60 2.98 -10.07 -0.03 -2.63 16 8 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 9 C -0.11 -3.79 6.01 31.67 0.19 -3.60 16 10 C -0.09 -4.24 5.61 31.88 0.18 -4.06 16 11 C 0.03 1.62 2.78 -10.47 -0.03 1.60 16 12 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 13 C -0.53 -29.06 8.49 25.60 0.22 -28.84 16 14 H 0.05 2.89 7.58 -2.91 -0.02 2.87 16 15 C 0.01 0.56 5.33 84.66 0.45 1.02 16 16 N -0.92 -53.68 12.00 21.45 0.26 -53.42 16 17 Si 0.95 43.68 29.54 68.60 2.03 45.71 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 C -0.10 -3.93 6.02 31.32 0.19 -3.74 16 22 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.14 1.12 8.14 -2.38 -0.02 1.10 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.42 8.27 8.42 -92.71 -0.78 7.49 16 26 H 0.06 1.78 8.04 -2.38 -0.02 1.76 16 27 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.05 1.83 7.78 -2.39 -0.02 1.81 16 30 H 0.04 1.72 8.05 -2.39 -0.02 1.70 16 31 H 0.04 1.85 7.36 -2.39 -0.02 1.83 16 32 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.05 1.96 7.67 -2.39 -0.02 1.94 16 34 H 0.06 2.28 7.69 -2.39 -0.02 2.27 16 Total: -1.00 -66.51 284.15 3.04 -63.47 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.30 Total: 9.25 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 3.91 Total: -14.31 kcal Atomic # 7 Polarization: -70.88 SS G_CDS: -2.93 Total: -73.81 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.27 Total: -30.30 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -66.51 3.04 -63.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261059346.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.794 kcal (2) G-P(sol) polarization free energy of solvation -66.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds