Wall clock time and date at job start Mon Mar 30 2020 02:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47633 * 111.00020 * 2 1 4 4 C 1.50818 * 108.05272 * 150.34673 * 3 2 1 5 5 C 1.53821 * 111.62296 * 95.05247 * 4 3 2 6 6 H 1.09000 * 108.97924 * 79.68420 * 5 4 3 7 7 C 1.50695 * 108.98394 * 198.39930 * 5 4 3 8 8 H 1.08009 * 119.99922 * 117.76720 * 7 5 4 9 9 C 1.37877 * 120.00528 * 297.77285 * 7 5 4 10 10 N 1.31509 * 120.00402 * 179.97438 * 9 7 5 11 11 Si 1.86805 * 119.99435 * 359.97438 * 9 7 5 12 12 H 1.48501 * 109.47319 * 90.00349 * 11 9 7 13 13 H 1.48501 * 109.46920 * 210.00171 * 11 9 7 14 14 H 1.48502 * 109.47164 * 329.99864 * 11 9 7 15 15 C 1.54171 * 111.97128 * 319.04625 * 5 4 3 16 16 H 1.08995 * 108.85503 * 79.29236 * 15 5 4 17 17 C 1.50699 * 108.77286 * 197.73873 * 15 5 4 18 18 O 1.20825 * 120.00360 * 95.83103 * 17 15 5 19 19 O 1.34231 * 119.99641 * 275.83265 * 17 15 5 20 20 C 1.50759 * 112.60871 * 318.48469 * 15 5 4 21 21 C 1.39775 * 110.99863 * 231.10590 * 2 1 3 22 22 H 1.09003 * 109.46918 * 184.94286 * 1 2 3 23 23 H 1.09001 * 109.46649 * 64.93870 * 1 2 3 24 24 H 1.08997 * 109.46684 * 304.93719 * 1 2 3 25 25 H 1.08996 * 109.74031 * 269.98191 * 3 2 1 26 26 H 1.08992 * 109.74457 * 30.70676 * 3 2 1 27 27 H 1.09005 * 109.04759 * 334.50384 * 4 3 2 28 28 H 1.09000 * 108.99296 * 215.57103 * 4 3 2 29 29 H 0.97000 * 119.99919 * 179.97438 * 10 9 7 30 30 H 0.96705 * 116.99471 * 179.97438 * 19 17 15 31 31 H 1.09004 * 109.54263 * 333.15776 * 20 15 5 32 32 H 1.09003 * 109.54658 * 212.88635 * 20 15 5 33 33 H 1.09002 * 109.02268 * 309.71374 * 21 2 1 34 34 H 1.08997 * 109.02102 * 68.61307 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9981 1.3783 0.0000 4 6 3.3290 1.3680 0.7094 5 6 4.4984 1.2356 -0.2811 6 1 4.6972 2.2100 -0.7271 7 6 5.7253 0.7817 0.4668 8 1 6.1861 -0.1647 0.2246 9 6 6.2597 1.5743 1.4604 10 7 7.3302 1.1779 2.1134 11 14 5.4631 3.2113 1.8788 12 1 4.4394 3.0080 2.9352 13 1 6.4995 4.1552 2.3690 14 1 4.8172 3.7722 0.6649 15 6 4.1920 0.2236 -1.4031 16 1 3.5561 0.7039 -2.1467 17 6 5.4874 -0.1804 -2.0588 18 8 6.0528 -1.1892 -1.7088 19 8 6.0130 0.5806 -3.0317 20 6 3.4972 -1.0136 -0.8940 21 6 1.9700 -0.8193 -1.0156 22 1 -0.3633 -1.0239 0.0885 23 1 -0.3633 0.4353 -0.9309 24 1 -0.3632 0.5885 0.8425 25 1 2.1304 1.7218 -1.0259 26 1 1.3067 2.0381 0.5238 27 1 3.3550 0.5290 1.4048 28 1 3.4400 2.2969 1.2688 29 1 7.7064 1.7358 2.8121 30 1 6.8455 0.2809 -3.4219 31 1 3.7620 -1.1767 0.1508 32 1 3.8038 -1.8746 -1.4879 33 1 1.4826 -1.7927 -0.9597 34 1 1.7464 -0.3653 -1.9810 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261211104.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:26 Heat of formation + Delta-G solvation = -84.304498 kcal Electronic energy + Delta-G solvation = -17015.079324 eV Core-core repulsion = 14334.021305 eV Total energy + Delta-G solvation = -2681.058019 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.99701 -38.44391 -35.42424 -34.60170 -32.28908 -31.41057 -28.11152 -26.44636 -24.33016 -22.77618 -21.56706 -20.24207 -18.55570 -17.47549 -16.68332 -16.19025 -15.31139 -14.87726 -14.71982 -14.36043 -14.09636 -13.43543 -12.91604 -12.66296 -12.53825 -12.06331 -12.01183 -11.50571 -11.10346 -10.94142 -10.90516 -10.85786 -10.60646 -10.23801 -9.85474 -9.74791 -9.59392 -9.39431 -8.81401 -8.52950 -7.88341 -6.04494 -4.05263 3.14954 3.29314 3.36624 3.38790 3.87963 4.26831 4.41934 5.15932 5.21636 5.36827 5.41692 5.59700 5.63473 5.73370 5.79807 5.90791 5.95312 6.01796 6.07218 6.21251 6.32956 6.49044 6.66148 6.83084 6.93745 7.03119 7.27660 7.34905 7.56516 7.72876 7.75145 8.51409 8.74877 9.08602 9.55973 11.08028 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.013963 C = 0.009552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.954464 B = 2004.807200 C = 2930.771187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.557 5.557 3 C 0.064 3.936 4 C -0.120 4.120 5 C 0.026 3.974 6 H 0.034 0.966 7 C -0.529 4.529 8 H 0.091 0.909 9 C 0.076 3.924 10 N -0.895 5.895 11 Si 0.879 3.121 12 H -0.276 1.276 13 H -0.297 1.297 14 H -0.265 1.265 15 C -0.055 4.055 16 H 0.071 0.929 17 C 0.501 3.499 18 O -0.517 6.517 19 O -0.525 6.525 20 C -0.104 4.104 21 C 0.080 3.920 22 H 0.062 0.938 23 H 0.019 0.981 24 H 0.064 0.936 25 H 0.039 0.961 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.263 0.737 30 H 0.397 0.603 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.300 -0.016 -7.182 13.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.282 5.282 3 C -0.062 4.062 4 C -0.158 4.158 5 C 0.007 3.993 6 H 0.052 0.948 7 C -0.566 4.566 8 H 0.109 0.891 9 C -0.126 4.126 10 N -0.532 5.532 11 Si 0.708 3.292 12 H -0.203 1.203 13 H -0.224 1.224 14 H -0.190 1.190 15 C -0.074 4.074 16 H 0.090 0.910 17 C 0.344 3.656 18 O -0.405 6.405 19 O -0.336 6.336 20 C -0.142 4.142 21 C -0.049 4.049 22 H 0.081 0.919 23 H 0.037 0.963 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.102 0.898 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.254 0.746 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -11.225 -0.319 -6.370 12.910 hybrid contribution 0.046 1.137 -0.566 1.271 sum -11.179 0.818 -6.936 13.182 Atomic orbital electron populations 1.22323 0.87655 1.01689 0.99879 1.58819 1.06546 1.13116 1.49701 1.21970 0.97494 0.87197 0.99564 1.21884 0.92441 1.01814 0.99627 1.19529 0.94961 0.93428 0.91390 0.94813 1.21376 1.09066 1.07663 1.18490 0.89078 1.24983 0.94555 0.97499 0.95607 1.69910 1.21794 1.37906 1.23621 0.86970 0.78608 0.84494 0.79096 1.20278 1.22400 1.19022 1.20845 0.89956 0.98646 0.97978 0.91049 1.23384 0.87046 0.79990 0.75161 1.90631 1.61679 1.27226 1.60917 1.84546 1.42203 1.55784 1.51090 1.21444 0.92279 0.95706 1.04757 1.20937 0.95995 0.96622 0.91392 0.91874 0.96294 0.91707 0.94303 0.91860 0.89786 0.93364 0.92687 0.74576 0.88455 0.91359 0.91351 0.96866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.44 60.07 0.57 0.96 16 2 N -0.56 -8.69 4.19 -248.32 -1.04 -9.73 16 3 C 0.06 1.07 5.37 -4.52 -0.02 1.04 16 4 C -0.12 -2.48 3.96 -27.40 -0.11 -2.58 16 5 C 0.03 0.59 1.57 -90.74 -0.14 0.45 16 6 H 0.03 0.79 6.93 -51.93 -0.36 0.43 16 7 C -0.53 -14.66 7.90 -34.44 -0.27 -14.93 16 8 H 0.09 2.84 5.97 -52.48 -0.31 2.52 16 9 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 10 N -0.89 -27.58 13.96 55.43 0.77 -26.81 16 11 Si 0.88 21.52 24.33 -169.99 -4.14 17.39 16 12 H -0.28 -6.58 7.03 56.52 0.40 -6.18 16 13 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 14 H -0.27 -6.14 6.41 56.52 0.36 -5.78 16 15 C -0.05 -1.09 1.89 -92.28 -0.17 -1.26 16 16 H 0.07 1.25 6.57 -51.93 -0.34 0.91 16 17 C 0.50 10.58 5.98 36.01 0.22 10.79 16 18 O -0.52 -12.37 15.22 -18.75 -0.29 -12.66 16 19 O -0.53 -9.46 13.42 -39.26 -0.53 -9.98 16 20 C -0.10 -1.90 4.73 -27.10 -0.13 -2.03 16 21 C 0.08 1.21 4.93 -6.75 -0.03 1.18 16 22 H 0.06 0.68 7.96 -51.93 -0.41 0.27 16 23 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.06 0.73 7.94 -51.93 -0.41 0.32 16 25 H 0.04 0.63 6.66 -51.93 -0.35 0.28 16 26 H 0.06 0.94 7.69 -51.93 -0.40 0.54 16 27 H 0.08 1.88 7.09 -51.93 -0.37 1.51 16 28 H 0.05 1.03 4.22 -51.93 -0.22 0.81 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.40 5.36 9.10 45.56 0.41 5.78 16 31 H 0.10 2.06 6.90 -51.93 -0.36 1.70 16 32 H 0.07 1.21 7.27 -51.93 -0.38 0.83 16 33 H 0.07 0.92 7.88 -51.93 -0.41 0.51 16 34 H 0.01 0.19 7.54 -51.93 -0.39 -0.20 16 LS Contribution 259.06 15.07 3.90 3.90 Total: -1.00 -32.42 259.06 -5.40 -37.83 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -3.90 Total: 4.37 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -0.20 Total: -4.31 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: -0.27 Total: -36.54 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.81 Total: -22.64 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.14 Total: 17.39 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -32.42 -5.40 -37.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261211104.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.475 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds