Wall clock time and date at job start Mon Mar 30 2020 02:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47633 * 111.00020 * 2 1 4 4 C 1.50818 * 108.05272 * 150.34673 * 3 2 1 5 5 C 1.53821 * 111.62296 * 95.05247 * 4 3 2 6 6 H 1.09000 * 108.97924 * 79.68420 * 5 4 3 7 7 C 1.50695 * 108.98394 * 198.39930 * 5 4 3 8 8 H 1.08009 * 119.99922 * 117.76720 * 7 5 4 9 9 C 1.37877 * 120.00528 * 297.77285 * 7 5 4 10 10 N 1.31509 * 120.00402 * 179.97438 * 9 7 5 11 11 Si 1.86805 * 119.99435 * 359.97438 * 9 7 5 12 12 H 1.48501 * 109.47319 * 90.00349 * 11 9 7 13 13 H 1.48501 * 109.46920 * 210.00171 * 11 9 7 14 14 H 1.48502 * 109.47164 * 329.99864 * 11 9 7 15 15 C 1.54171 * 111.97128 * 319.04625 * 5 4 3 16 16 H 1.08995 * 108.85503 * 79.29236 * 15 5 4 17 17 C 1.50699 * 108.77286 * 197.73873 * 15 5 4 18 18 O 1.20825 * 120.00360 * 95.83103 * 17 15 5 19 19 O 1.34231 * 119.99641 * 275.83265 * 17 15 5 20 20 C 1.50759 * 112.60871 * 318.48469 * 15 5 4 21 21 C 1.39775 * 110.99863 * 231.10590 * 2 1 3 22 22 H 1.09003 * 109.46918 * 184.94286 * 1 2 3 23 23 H 1.09001 * 109.46649 * 64.93870 * 1 2 3 24 24 H 1.08997 * 109.46684 * 304.93719 * 1 2 3 25 25 H 1.08996 * 109.74031 * 269.98191 * 3 2 1 26 26 H 1.08992 * 109.74457 * 30.70676 * 3 2 1 27 27 H 1.09005 * 109.04759 * 334.50384 * 4 3 2 28 28 H 1.09000 * 108.99296 * 215.57103 * 4 3 2 29 29 H 0.97000 * 119.99919 * 179.97438 * 10 9 7 30 30 H 0.96705 * 116.99471 * 179.97438 * 19 17 15 31 31 H 1.09004 * 109.54263 * 333.15776 * 20 15 5 32 32 H 1.09003 * 109.54658 * 212.88635 * 20 15 5 33 33 H 1.09002 * 109.02268 * 309.71374 * 21 2 1 34 34 H 1.08997 * 109.02102 * 68.61307 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9981 1.3783 0.0000 4 6 3.3290 1.3680 0.7094 5 6 4.4984 1.2356 -0.2811 6 1 4.6972 2.2100 -0.7271 7 6 5.7253 0.7817 0.4668 8 1 6.1861 -0.1647 0.2246 9 6 6.2597 1.5743 1.4604 10 7 7.3302 1.1779 2.1134 11 14 5.4631 3.2113 1.8788 12 1 4.4394 3.0080 2.9352 13 1 6.4995 4.1552 2.3690 14 1 4.8172 3.7722 0.6649 15 6 4.1920 0.2236 -1.4031 16 1 3.5561 0.7039 -2.1467 17 6 5.4874 -0.1804 -2.0588 18 8 6.0528 -1.1892 -1.7088 19 8 6.0130 0.5806 -3.0317 20 6 3.4972 -1.0136 -0.8940 21 6 1.9700 -0.8193 -1.0156 22 1 -0.3633 -1.0239 0.0885 23 1 -0.3633 0.4353 -0.9309 24 1 -0.3632 0.5885 0.8425 25 1 2.1304 1.7218 -1.0259 26 1 1.3067 2.0381 0.5238 27 1 3.3550 0.5290 1.4048 28 1 3.4400 2.2969 1.2688 29 1 7.7064 1.7358 2.8121 30 1 6.8455 0.2809 -3.4219 31 1 3.7620 -1.1767 0.1508 32 1 3.8038 -1.8746 -1.4879 33 1 1.4826 -1.7927 -0.9597 34 1 1.7464 -0.3653 -1.9810 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261211104.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:26 Heat of formation + Delta-G solvation = -109.530113 kcal Electronic energy + Delta-G solvation = -17016.173189 eV Core-core repulsion = 14334.021305 eV Total energy + Delta-G solvation = -2682.151883 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.58986 -39.84230 -36.99885 -36.26607 -34.16660 -33.05173 -29.51367 -28.11870 -25.59514 -24.51933 -23.17303 -21.56026 -20.29341 -19.20377 -18.52340 -17.74331 -16.87527 -16.34010 -16.21477 -15.87493 -15.59538 -15.05886 -14.66441 -14.30484 -13.98950 -13.39352 -13.36421 -12.91458 -12.68876 -12.62430 -12.54966 -12.33580 -12.10363 -11.91776 -11.53114 -11.47197 -11.27819 -11.15895 -10.77803 -10.63052 -8.99855 -8.25186 -6.30109 1.33527 1.36331 1.47039 1.48467 2.35108 2.38804 3.07267 3.15614 3.88714 3.90918 4.10771 4.27964 4.39019 4.46074 4.55052 4.66269 4.67428 4.80107 4.82689 4.87868 5.00827 5.11911 5.13310 5.23033 5.28629 5.47336 5.61229 5.75288 5.83310 6.31957 6.35258 6.59630 6.81303 7.20960 7.34698 8.91532 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.013963 C = 0.009552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.954464 B = 2004.807200 C = 2930.771187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.579 5.579 3 C 0.070 3.930 4 C -0.112 4.112 5 C 0.026 3.974 6 H 0.035 0.965 7 C -0.525 4.525 8 H 0.043 0.957 9 C 0.011 3.989 10 N -0.952 5.952 11 Si 0.944 3.056 12 H -0.264 1.264 13 H -0.303 1.303 14 H -0.237 1.237 15 C -0.055 4.055 16 H 0.106 0.894 17 C 0.496 3.504 18 O -0.555 6.555 19 O -0.517 6.517 20 C -0.100 4.100 21 C 0.088 3.912 22 H 0.074 0.926 23 H 0.034 0.966 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.263 0.737 30 H 0.417 0.583 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.429 1.484 -8.491 16.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.303 5.303 3 C -0.057 4.057 4 C -0.150 4.150 5 C 0.007 3.993 6 H 0.053 0.947 7 C -0.563 4.563 8 H 0.062 0.938 9 C -0.185 4.185 10 N -0.592 5.592 11 Si 0.770 3.230 12 H -0.190 1.190 13 H -0.231 1.231 14 H -0.160 1.160 15 C -0.074 4.074 16 H 0.124 0.876 17 C 0.341 3.659 18 O -0.446 6.446 19 O -0.329 6.329 20 C -0.138 4.138 21 C -0.041 4.041 22 H 0.093 0.907 23 H 0.053 0.947 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.106 0.894 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.276 0.724 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -14.382 1.185 -7.721 16.366 hybrid contribution 1.109 0.562 -0.218 1.262 sum -13.273 1.747 -7.939 15.564 Atomic orbital electron populations 1.22376 0.84965 1.02909 1.01027 1.58696 1.08882 1.12509 1.50258 1.21858 0.95434 0.88514 0.99894 1.21695 0.94179 1.00380 0.98761 1.19489 0.93752 0.93912 0.92148 0.94737 1.21608 1.10580 1.05647 1.18454 0.93840 1.25911 0.95096 1.01877 0.95652 1.70089 1.24183 1.39932 1.25039 0.85912 0.77717 0.79250 0.80104 1.18971 1.23059 1.16022 1.20915 0.89958 0.98838 0.97681 0.87608 1.23796 0.87397 0.79519 0.75166 1.90617 1.62814 1.29023 1.62150 1.84489 1.43382 1.54938 1.50131 1.21368 0.95198 0.95176 1.02033 1.20865 0.93069 0.97930 0.92256 0.90684 0.94703 0.90960 0.93066 0.89418 0.92440 0.93800 0.92808 0.72354 0.92406 0.91430 0.89413 0.94880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.44 127.69 1.21 1.87 16 2 N -0.58 -15.97 4.19 -939.56 -3.94 -19.91 16 3 C 0.07 2.04 5.37 85.45 0.46 2.49 16 4 C -0.11 -4.42 3.96 30.16 0.12 -4.30 16 5 C 0.03 1.16 1.57 -10.87 -0.02 1.14 16 6 H 0.03 1.54 6.93 -2.39 -0.02 1.52 16 7 C -0.53 -29.98 7.90 25.60 0.20 -29.77 16 8 H 0.04 2.86 5.97 -2.91 -0.02 2.84 16 9 C 0.01 0.67 5.45 84.66 0.46 1.13 16 10 N -0.95 -61.22 13.96 21.45 0.30 -60.92 16 11 Si 0.94 44.33 24.33 68.60 1.67 45.99 16 12 H -0.26 -11.79 7.03 99.48 0.70 -11.09 16 13 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 14 H -0.24 -9.94 6.41 99.48 0.64 -9.30 16 15 C -0.05 -2.09 1.89 -11.87 -0.02 -2.12 16 16 H 0.11 3.32 6.57 -2.39 -0.02 3.30 16 17 C 0.50 20.91 5.98 71.24 0.43 21.33 16 18 O -0.56 -27.47 15.22 21.97 0.33 -27.13 16 19 O -0.52 -17.95 13.42 -51.42 -0.69 -18.64 16 20 C -0.10 -3.57 4.73 30.35 0.14 -3.43 16 21 C 0.09 2.37 4.93 88.07 0.43 2.81 16 22 H 0.07 1.30 7.96 -2.39 -0.02 1.28 16 23 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.07 1.31 7.94 -2.39 -0.02 1.29 16 25 H 0.05 1.39 6.66 -2.39 -0.02 1.37 16 26 H 0.09 2.17 7.69 -2.39 -0.02 2.15 16 27 H 0.06 2.56 7.09 -2.38 -0.02 2.55 16 28 H 0.04 1.75 4.22 -2.39 -0.01 1.74 16 29 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 30 H 0.42 10.82 9.10 -74.05 -0.67 10.15 16 31 H 0.06 2.52 6.90 -2.38 -0.02 2.50 16 32 H 0.07 2.39 7.27 -2.39 -0.02 2.37 16 33 H 0.09 2.04 7.88 -2.39 -0.02 2.02 16 34 H 0.03 0.79 7.54 -2.39 -0.02 0.77 16 Total: -1.00 -73.47 259.06 1.45 -72.02 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.36 Total: 17.44 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 3.41 Total: -8.85 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -3.64 Total: -80.83 kcal Atomic # 8 Polarization: -45.42 SS G_CDS: -0.36 Total: -45.77 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.67 Total: 45.99 kcal Total: -73.47 1.45 -72.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261211104.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.505 kcal (2) G-P(sol) polarization free energy of solvation -73.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds