Wall clock time and date at job start Mon Mar 30 2020 02:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.39771 * 111.00335 * 2 1 4 4 C 1.54440 * 111.76479 * 170.85920 * 3 2 1 5 5 C 1.50758 * 109.02826 * 77.38258 * 4 3 2 6 6 H 1.08996 * 108.85497 * 27.80521 * 5 4 3 7 7 C 1.50699 * 108.84919 * 146.18270 * 5 4 3 8 8 O 1.20834 * 119.99448 * 123.08992 * 7 5 4 9 9 O 1.34227 * 120.00780 * 303.08976 * 7 5 4 10 10 C 1.54158 * 112.61140 * 266.99150 * 5 4 3 11 11 H 1.09003 * 108.98255 * 162.16599 * 10 5 4 12 12 C 1.50703 * 108.91741 * 280.92059 * 10 5 4 13 13 H 1.07999 * 119.99333 * 2.42503 * 12 10 5 14 14 C 1.37875 * 120.00157 * 182.41946 * 12 10 5 15 15 N 1.31509 * 120.00126 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 119.99988 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46948 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46627 * 120.00320 * 16 14 12 19 19 H 1.48494 * 109.46985 * 240.00658 * 16 14 12 20 20 C 1.53816 * 111.97908 * 41.52196 * 10 5 4 21 21 C 1.47633 * 110.99785 * 231.09172 * 2 1 3 22 22 H 1.09002 * 109.47401 * 188.90734 * 1 2 3 23 23 H 1.09001 * 109.46874 * 68.90747 * 1 2 3 24 24 H 1.09004 * 109.46970 * 308.90880 * 1 2 3 25 25 H 1.09005 * 109.02144 * 291.44318 * 3 2 1 26 26 H 1.09000 * 109.02441 * 50.26953 * 3 2 1 27 27 H 1.08994 * 109.54115 * 317.52120 * 4 3 2 28 28 H 1.09001 * 109.61671 * 197.29726 * 4 3 2 29 29 H 0.96697 * 117.00219 * 180.02562 * 9 7 5 30 30 H 0.96998 * 120.00513 * 179.97438 * 15 14 12 31 31 H 1.09000 * 109.04789 * 280.41068 * 20 10 5 32 32 H 1.08997 * 109.05863 * 161.50446 * 20 10 5 33 33 H 1.08999 * 109.75004 * 329.32103 * 21 2 1 34 34 H 1.09000 * 109.74938 * 90.00755 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9700 1.3048 0.0000 4 6 3.4972 1.3319 0.2279 5 6 4.1923 0.9506 -1.0544 6 1 3.5568 1.2277 -1.8955 7 6 5.4867 1.7160 -1.1528 8 8 6.5319 1.1222 -1.2748 9 8 5.4786 3.0574 -1.1051 10 6 4.4982 -0.5581 -1.1368 11 1 4.6975 -0.8233 -2.1751 12 6 5.7242 -0.8539 -0.3119 13 1 6.2052 -0.0622 0.2434 14 6 6.2318 -2.1350 -0.2661 15 7 5.6463 -3.0988 -0.9426 16 14 7.7520 -2.5014 0.7558 17 1 8.2171 -1.2549 1.4155 18 1 7.4208 -3.5144 1.7899 19 1 8.8260 -3.0261 -0.1253 20 6 3.3285 -1.4118 -0.6182 21 6 1.9980 -0.8657 -1.0725 22 1 -0.3634 -1.0153 0.1591 23 1 -0.3633 0.3698 -0.9588 24 1 -0.3633 0.6455 0.7997 25 1 1.7456 1.7715 -0.9592 26 1 1.4824 1.8726 0.7925 27 1 3.7616 0.6216 1.0111 28 1 3.8051 2.3343 0.5255 29 1 6.3335 3.5043 -1.1725 30 1 6.0035 -4.0001 -0.9107 31 1 3.3540 -1.4258 0.4715 32 1 3.4399 -2.4308 -0.9885 33 1 1.3063 -1.6875 -1.2574 34 1 2.1301 -0.2833 -1.9844 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261211106.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:27 Heat of formation + Delta-G solvation = -77.787836 kcal Electronic energy + Delta-G solvation = -16997.116483 eV Core-core repulsion = 14316.341048 eV Total energy + Delta-G solvation = -2680.775435 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.87772 -38.28069 -35.50217 -34.19673 -32.26900 -30.81146 -27.75152 -26.00086 -24.02834 -22.99755 -21.45977 -20.15909 -18.18034 -17.26433 -16.65649 -15.64569 -15.08687 -14.86475 -14.45986 -14.34481 -13.95402 -13.17367 -12.66098 -12.45628 -12.30464 -11.82911 -11.67782 -11.13143 -11.02862 -10.90009 -10.77778 -10.67436 -10.55639 -10.21174 -9.71150 -9.46859 -9.42617 -9.05584 -8.41596 -8.18255 -7.69240 -5.82630 -3.76234 3.19790 3.42309 3.49286 3.55552 3.87912 4.46506 4.62177 5.27974 5.49642 5.50118 5.60486 5.72473 5.77132 5.90027 6.04207 6.06461 6.12457 6.18517 6.34681 6.37712 6.55185 6.87637 6.97174 7.10213 7.27376 7.37645 7.60426 7.82750 7.96086 8.06867 8.19033 8.51802 8.85521 9.15504 9.80132 11.26738 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.023492 B = 0.011939 C = 0.008764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.624238 B = 2344.666364 C = 3194.271050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.559 5.559 3 C 0.084 3.916 4 C -0.107 4.107 5 C -0.063 4.063 6 H 0.073 0.927 7 C 0.459 3.541 8 O -0.464 6.464 9 O -0.539 6.539 10 C 0.060 3.940 11 H 0.028 0.972 12 C -0.473 4.473 13 H 0.061 0.939 14 C 0.055 3.945 15 N -0.901 5.901 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.288 1.288 20 C -0.098 4.098 21 C 0.063 3.937 22 H 0.063 0.937 23 H 0.017 0.983 24 H 0.059 0.941 25 H 0.011 0.989 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.393 0.607 30 H 0.255 0.745 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.783 8.371 0.522 11.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.283 5.283 3 C -0.046 4.046 4 C -0.145 4.145 5 C -0.082 4.082 6 H 0.091 0.909 7 C 0.299 3.701 8 O -0.347 6.347 9 O -0.352 6.352 10 C 0.041 3.959 11 H 0.046 0.954 12 C -0.511 4.511 13 H 0.079 0.921 14 C -0.144 4.144 15 N -0.542 5.542 16 Si 0.719 3.281 17 H -0.201 1.201 18 H -0.215 1.215 19 H -0.215 1.215 20 C -0.137 4.137 21 C -0.063 4.063 22 H 0.082 0.918 23 H 0.035 0.965 24 H 0.078 0.922 25 H 0.029 0.971 26 H 0.082 0.918 27 H 0.110 0.890 28 H 0.084 0.916 29 H 0.249 0.751 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.665 7.608 0.880 10.836 hybrid contribution 1.230 0.411 -0.331 1.338 sum -6.435 8.019 0.549 10.297 Atomic orbital electron populations 1.22309 0.88128 1.01795 0.99315 1.58910 1.06200 1.13550 1.49649 1.20864 0.95755 0.89110 0.98835 1.21463 0.93296 1.01704 0.98066 1.21155 0.89827 0.98600 0.98594 0.90923 1.23908 0.93307 0.79298 0.73569 1.90825 1.34093 1.68195 1.41591 1.84585 1.40295 1.23533 1.86770 1.19092 0.94574 0.84329 0.97862 0.95375 1.21247 1.09126 0.93711 1.27045 0.92051 1.24841 0.96977 0.96476 0.96127 1.69912 1.40508 1.00998 1.42794 0.86567 0.83696 0.77840 0.80037 1.20138 1.21495 1.21468 1.21416 0.89744 1.01087 1.01442 1.22123 0.98696 0.94765 0.90707 0.91774 0.96466 0.92233 0.97065 0.91848 0.89032 0.91649 0.75062 0.93518 0.91962 0.89680 0.92306 0.95123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.43 60.07 0.57 0.99 16 2 N -0.56 -9.28 4.19 -248.31 -1.04 -10.32 16 3 C 0.08 1.32 4.93 -6.74 -0.03 1.29 16 4 C -0.11 -1.93 5.09 -27.10 -0.14 -2.06 16 5 C -0.06 -1.27 1.89 -92.29 -0.17 -1.44 16 6 H 0.07 1.37 6.58 -51.93 -0.34 1.03 16 7 C 0.46 9.49 6.96 36.00 0.25 9.74 16 8 O -0.46 -11.49 13.76 -18.76 -0.26 -11.75 16 9 O -0.54 -8.74 12.77 -39.25 -0.50 -9.24 16 10 C 0.06 1.46 1.79 -90.74 -0.16 1.30 16 11 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 12 C -0.47 -13.05 6.10 -34.44 -0.21 -13.26 16 13 H 0.06 1.75 5.83 -52.49 -0.31 1.44 16 14 C 0.05 1.56 5.30 -17.82 -0.09 1.46 16 15 N -0.90 -26.15 11.56 55.43 0.64 -25.51 16 16 Si 0.89 22.65 29.54 -169.99 -5.02 17.63 16 17 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 20 C -0.10 -2.22 4.22 -27.40 -0.12 -2.34 16 21 C 0.06 1.15 5.36 -4.51 -0.02 1.13 16 22 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 23 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.06 0.69 7.86 -51.93 -0.41 0.28 16 25 H 0.01 0.18 7.55 -51.93 -0.39 -0.22 16 26 H 0.06 0.88 7.81 -51.93 -0.41 0.47 16 27 H 0.09 1.86 6.89 -51.93 -0.36 1.50 16 28 H 0.06 1.08 7.23 -51.93 -0.38 0.70 16 29 H 0.39 4.66 9.10 45.56 0.41 5.07 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.06 1.50 7.09 -51.93 -0.37 1.13 16 32 H 0.08 2.14 6.72 -51.93 -0.35 1.79 16 33 H 0.06 1.00 7.77 -51.93 -0.40 0.59 16 34 H 0.03 0.56 6.67 -51.93 -0.35 0.21 16 LS Contribution 263.99 15.07 3.98 3.98 Total: -1.00 -31.14 263.99 -6.37 -37.52 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -4.04 Total: 0.88 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -0.14 Total: -3.19 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: -0.40 Total: -35.82 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.76 Total: -20.99 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.14 -6.37 -37.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261211106.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.272 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds