Wall clock time and date at job start Mon Mar 30 2020 02:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.39771 * 111.00335 * 2 1 4 4 C 1.54440 * 111.76479 * 170.85920 * 3 2 1 5 5 C 1.50758 * 109.02826 * 77.38258 * 4 3 2 6 6 H 1.08996 * 108.85497 * 27.80521 * 5 4 3 7 7 C 1.50699 * 108.84919 * 146.18270 * 5 4 3 8 8 O 1.20834 * 119.99448 * 123.08992 * 7 5 4 9 9 O 1.34227 * 120.00780 * 303.08976 * 7 5 4 10 10 C 1.54158 * 112.61140 * 266.99150 * 5 4 3 11 11 H 1.09003 * 108.98255 * 162.16599 * 10 5 4 12 12 C 1.50703 * 108.91741 * 280.92059 * 10 5 4 13 13 H 1.07999 * 119.99333 * 2.42503 * 12 10 5 14 14 C 1.37875 * 120.00157 * 182.41946 * 12 10 5 15 15 N 1.31509 * 120.00126 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 119.99988 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46948 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46627 * 120.00320 * 16 14 12 19 19 H 1.48494 * 109.46985 * 240.00658 * 16 14 12 20 20 C 1.53816 * 111.97908 * 41.52196 * 10 5 4 21 21 C 1.47633 * 110.99785 * 231.09172 * 2 1 3 22 22 H 1.09002 * 109.47401 * 188.90734 * 1 2 3 23 23 H 1.09001 * 109.46874 * 68.90747 * 1 2 3 24 24 H 1.09004 * 109.46970 * 308.90880 * 1 2 3 25 25 H 1.09005 * 109.02144 * 291.44318 * 3 2 1 26 26 H 1.09000 * 109.02441 * 50.26953 * 3 2 1 27 27 H 1.08994 * 109.54115 * 317.52120 * 4 3 2 28 28 H 1.09001 * 109.61671 * 197.29726 * 4 3 2 29 29 H 0.96697 * 117.00219 * 180.02562 * 9 7 5 30 30 H 0.96998 * 120.00513 * 179.97438 * 15 14 12 31 31 H 1.09000 * 109.04789 * 280.41068 * 20 10 5 32 32 H 1.08997 * 109.05863 * 161.50446 * 20 10 5 33 33 H 1.08999 * 109.75004 * 329.32103 * 21 2 1 34 34 H 1.09000 * 109.74938 * 90.00755 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9700 1.3048 0.0000 4 6 3.4972 1.3319 0.2279 5 6 4.1923 0.9506 -1.0544 6 1 3.5568 1.2277 -1.8955 7 6 5.4867 1.7160 -1.1528 8 8 6.5319 1.1222 -1.2748 9 8 5.4786 3.0574 -1.1051 10 6 4.4982 -0.5581 -1.1368 11 1 4.6975 -0.8233 -2.1751 12 6 5.7242 -0.8539 -0.3119 13 1 6.2052 -0.0622 0.2434 14 6 6.2318 -2.1350 -0.2661 15 7 5.6463 -3.0988 -0.9426 16 14 7.7520 -2.5014 0.7558 17 1 8.2171 -1.2549 1.4155 18 1 7.4208 -3.5144 1.7899 19 1 8.8260 -3.0261 -0.1253 20 6 3.3285 -1.4118 -0.6182 21 6 1.9980 -0.8657 -1.0725 22 1 -0.3634 -1.0153 0.1591 23 1 -0.3633 0.3698 -0.9588 24 1 -0.3633 0.6455 0.7997 25 1 1.7456 1.7715 -0.9592 26 1 1.4824 1.8726 0.7925 27 1 3.7616 0.6216 1.0111 28 1 3.8051 2.3343 0.5255 29 1 6.3335 3.5043 -1.1725 30 1 6.0035 -4.0001 -0.9107 31 1 3.3540 -1.4258 0.4715 32 1 3.4399 -2.4308 -0.9885 33 1 1.3063 -1.6875 -1.2574 34 1 2.1301 -0.2833 -1.9844 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261211106.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:27 Heat of formation + Delta-G solvation = -100.139595 kcal Electronic energy + Delta-G solvation = -16998.085728 eV Core-core repulsion = 14316.341048 eV Total energy + Delta-G solvation = -2681.744680 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.49218 -39.71867 -37.05950 -35.91029 -34.06673 -32.55473 -29.19797 -27.78933 -25.44474 -24.75529 -23.04343 -21.56530 -19.96942 -18.94390 -18.43759 -17.25627 -16.72507 -16.36417 -16.15381 -15.89985 -15.42782 -14.85346 -14.42137 -13.98900 -13.68102 -13.26949 -13.10071 -12.95216 -12.77763 -12.66635 -12.44814 -12.20646 -12.17594 -12.02174 -11.46580 -11.23176 -11.11268 -10.89676 -10.41422 -10.29775 -8.94914 -7.98818 -5.96215 1.37014 1.39179 1.50112 1.55961 2.39234 2.51222 3.20490 3.33073 3.97981 4.10329 4.17717 4.38016 4.53392 4.56404 4.69393 4.74105 4.84732 4.91840 4.95915 4.98997 5.13015 5.24357 5.31449 5.47282 5.55245 5.76118 5.85300 6.03041 6.14655 6.39998 6.44840 6.68022 7.00661 7.33707 7.61048 9.09156 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.023492 B = 0.011939 C = 0.008764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.624238 B = 2344.666364 C = 3194.271050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.575 5.575 3 C 0.087 3.913 4 C -0.101 4.101 5 C -0.061 4.061 6 H 0.093 0.907 7 C 0.467 3.533 8 O -0.516 6.516 9 O -0.518 6.518 10 C 0.059 3.941 11 H -0.010 1.010 12 C -0.472 4.472 13 H 0.050 0.950 14 C 0.002 3.998 15 N -0.926 5.926 16 Si 0.939 3.061 17 H -0.278 1.278 18 H -0.279 1.279 19 H -0.290 1.290 20 C -0.081 4.081 21 C 0.073 3.927 22 H 0.066 0.934 23 H 0.029 0.971 24 H 0.080 0.920 25 H 0.024 0.976 26 H 0.092 0.908 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.416 0.584 30 H 0.254 0.746 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.305 10.249 1.081 13.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.299 5.299 3 C -0.043 4.043 4 C -0.139 4.139 5 C -0.080 4.080 6 H 0.111 0.889 7 C 0.309 3.691 8 O -0.403 6.403 9 O -0.332 6.332 10 C 0.040 3.960 11 H 0.008 0.992 12 C -0.511 4.511 13 H 0.068 0.932 14 C -0.194 4.194 15 N -0.568 5.568 16 Si 0.767 3.233 17 H -0.203 1.203 18 H -0.205 1.205 19 H -0.216 1.216 20 C -0.119 4.119 21 C -0.053 4.053 22 H 0.085 0.915 23 H 0.048 0.952 24 H 0.098 0.902 25 H 0.042 0.958 26 H 0.110 0.890 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.276 0.724 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.204 9.531 1.451 13.329 hybrid contribution 1.712 -0.064 -0.522 1.790 sum -7.493 9.467 0.929 12.109 Atomic orbital electron populations 1.22373 0.85475 1.02735 1.00778 1.58787 1.08530 1.13885 1.48730 1.20889 0.93865 0.89029 1.00500 1.21420 0.95176 1.01762 0.95543 1.21040 0.90411 0.95719 1.00878 0.88931 1.23921 0.92614 0.80443 0.72081 1.90812 1.35631 1.69607 1.44219 1.84494 1.41977 1.21062 1.85689 1.18995 0.94296 0.87833 0.94872 0.99234 1.21496 1.09965 0.93149 1.26465 0.93209 1.25507 0.99493 0.96806 0.97563 1.70034 1.41609 1.01060 1.44140 0.85782 0.80973 0.77571 0.78933 1.20287 1.20546 1.21633 1.21096 0.91911 0.99243 0.99671 1.21862 0.96482 0.95737 0.91250 0.91476 0.95244 0.90165 0.95831 0.89030 0.91886 0.89702 0.72363 0.93738 0.94017 0.93106 0.90962 0.94769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 9.43 127.69 1.20 1.96 16 2 N -0.57 -17.51 4.19 -939.52 -3.94 -21.44 16 3 C 0.09 2.41 4.93 88.08 0.43 2.84 16 4 C -0.10 -3.41 5.09 30.36 0.15 -3.26 16 5 C -0.06 -2.43 1.89 -11.88 -0.02 -2.45 16 6 H 0.09 3.29 6.58 -2.39 -0.02 3.28 16 7 C 0.47 18.84 6.96 71.24 0.50 19.34 16 8 O -0.52 -25.75 13.76 21.94 0.30 -25.45 16 9 O -0.52 -15.31 12.77 -51.38 -0.66 -15.97 16 10 C 0.06 2.92 1.79 -10.87 -0.02 2.90 16 11 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 12 C -0.47 -26.77 6.10 25.60 0.16 -26.62 16 13 H 0.05 2.90 5.83 -2.91 -0.02 2.88 16 14 C 0.00 0.13 5.30 84.66 0.45 0.57 16 15 N -0.93 -55.61 11.56 21.45 0.25 -55.36 16 16 Si 0.94 47.49 29.54 68.60 2.03 49.52 16 17 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 18 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 19 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 20 C -0.08 -3.71 4.22 30.16 0.13 -3.59 16 21 C 0.07 2.59 5.36 85.46 0.46 3.05 16 22 H 0.07 1.47 8.07 -2.39 -0.02 1.45 16 23 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.08 1.50 7.86 -2.38 -0.02 1.48 16 25 H 0.02 0.62 7.55 -2.38 -0.02 0.60 16 26 H 0.09 2.09 7.81 -2.39 -0.02 2.07 16 27 H 0.06 2.51 6.89 -2.39 -0.02 2.49 16 28 H 0.08 2.52 7.23 -2.39 -0.02 2.50 16 29 H 0.42 8.61 9.10 -74.06 -0.67 7.94 16 30 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 31 H 0.04 2.05 7.09 -2.39 -0.02 2.04 16 32 H 0.05 2.66 6.72 -2.39 -0.02 2.64 16 33 H 0.07 2.35 7.77 -2.39 -0.02 2.33 16 34 H 0.03 1.18 6.67 -2.39 -0.02 1.17 16 Total: -1.00 -69.15 263.99 1.85 -67.30 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 0.43 Total: 6.66 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 3.44 Total: -5.25 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -3.69 Total: -76.80 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -0.35 Total: -41.42 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -69.15 1.85 -67.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261211106.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.844 kcal (2) G-P(sol) polarization free energy of solvation -69.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds