Wall clock time and date at job start Mon Mar 30 2020 03:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.90654 * 2 1 4 4 C 1.53998 * 109.91720 * 121.10689 * 2 1 3 5 5 H 1.08996 * 110.30508 * 239.49395 * 4 2 1 6 6 N 1.46899 * 110.30896 * 1.55850 * 4 2 1 7 7 C 1.54598 * 105.13743 * 120.57516 * 4 2 1 8 8 C 1.54935 * 102.92387 * 21.95925 * 7 4 2 9 9 N 1.47907 * 109.91384 * 238.69389 * 2 1 3 10 10 C 1.46899 * 110.99498 * 94.80371 * 9 2 1 11 11 C 1.50709 * 109.46883 * 169.99967 * 10 9 2 12 12 O 1.21293 * 119.99493 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99774 * 179.97438 * 11 10 9 14 14 C 1.37101 * 119.99656 * 179.97438 * 13 11 10 15 15 H 1.08004 * 119.99868 * 359.97438 * 14 13 11 16 16 C 1.38951 * 120.00132 * 180.02562 * 14 13 11 17 17 N 1.31410 * 119.99617 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00006 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47105 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46988 * 120.00385 * 18 16 14 21 21 H 1.48503 * 109.46814 * 239.99960 * 18 16 14 22 22 H 1.09001 * 109.47002 * 298.89255 * 1 2 3 23 23 H 1.08993 * 109.46955 * 58.89692 * 1 2 3 24 24 H 1.09000 * 109.47050 * 178.89521 * 1 2 3 25 25 H 1.00899 * 110.99751 * 179.97438 * 6 4 2 26 26 H 1.00898 * 111.00444 * 303.95666 * 6 4 2 27 27 H 1.09006 * 110.72038 * 140.31426 * 7 4 2 28 28 H 1.08995 * 110.72445 * 263.41781 * 7 4 2 29 29 H 1.09001 * 110.67274 * 81.01689 * 8 7 4 30 30 H 1.09001 * 110.66773 * 203.98510 * 8 7 4 31 31 H 1.09003 * 109.47283 * 289.99446 * 10 9 2 32 32 H 1.08996 * 109.47682 * 49.99985 * 10 9 2 33 33 H 0.96998 * 120.00305 * 359.97438 * 13 11 10 34 34 H 0.97007 * 119.99648 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9012 1.0248 0.0000 4 6 2.0547 -0.7480 1.2397 5 1 2.6714 -0.0863 1.8478 6 7 0.9336 -1.2701 2.0324 7 6 2.9059 -1.9106 0.6794 8 6 3.2682 -1.4199 -0.7448 9 7 2.0338 -0.7226 -1.1882 10 6 2.3211 0.2083 -2.2877 11 6 3.0560 -0.5201 -3.3834 12 8 3.3153 -1.6986 -3.2602 13 7 3.4250 0.1380 -4.5001 14 6 4.0940 -0.5245 -5.4967 15 1 4.3257 -1.5736 -5.3867 16 6 4.4750 0.1541 -6.6479 17 7 4.1944 1.4309 -6.7811 18 14 5.3858 -0.7488 -8.0060 19 1 5.5787 -2.1680 -7.6140 20 1 4.5940 -0.6844 -9.2607 21 1 6.7095 -0.1114 -8.2228 22 1 -0.3633 0.4965 0.8998 23 1 -0.3633 0.5308 -0.8799 24 1 -0.3633 -1.0275 -0.0198 25 1 1.2659 -1.7630 2.8477 26 1 0.2979 -0.5304 2.2908 27 1 3.8053 -2.0536 1.2785 28 1 2.3224 -2.8302 0.6368 29 1 4.1098 -0.7280 -0.7109 30 1 3.4916 -2.2639 -1.3973 31 1 1.3855 0.6067 -2.6803 32 1 2.9383 1.0273 -1.9185 33 1 3.2173 1.0803 -4.5988 34 1 4.4607 1.9047 -7.5846 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307739291.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:00 Heat of formation + Delta-G solvation = -47.337518 kcal Electronic energy + Delta-G solvation = -16103.216512 eV Core-core repulsion = 13456.054253 eV Total energy + Delta-G solvation = -2647.162259 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.89964 -39.40233 -36.08321 -34.90211 -33.33576 -32.29349 -30.67371 -27.74062 -25.99630 -25.72753 -22.39451 -21.06288 -20.36039 -19.88535 -17.70390 -17.35648 -16.49292 -16.48165 -16.28751 -16.05779 -15.66328 -15.22039 -14.69155 -14.13523 -13.72764 -13.48376 -13.26769 -12.98958 -12.90465 -12.48254 -12.38713 -12.28885 -12.15821 -12.09394 -11.90240 -11.55410 -11.45657 -10.18355 -10.01942 -9.55309 -9.25327 -8.47842 -5.96606 1.35916 1.41279 1.55765 2.02120 2.28093 2.83521 3.18924 3.31160 3.60285 3.69332 3.83980 4.20380 4.26100 4.32829 4.42225 4.50224 4.54244 4.67072 4.79799 4.85508 5.00686 5.13275 5.22938 5.29819 5.40782 5.57751 5.89997 6.00527 6.17300 6.36396 6.59459 6.71422 7.11708 7.53651 8.09748 8.70012 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.062054 B = 0.005625 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.112021 B = 4976.148479 C = 5254.954639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.057 3.943 3 H 0.056 0.944 4 C 0.091 3.909 5 H 0.054 0.946 6 N -0.839 5.839 7 C -0.111 4.111 8 C 0.038 3.962 9 N -0.505 5.505 10 C 0.049 3.951 11 C 0.439 3.561 12 O -0.613 6.613 13 N -0.572 5.572 14 C -0.332 4.332 15 H 0.079 0.921 16 C -0.013 4.013 17 N -0.921 5.921 18 Si 0.994 3.006 19 H -0.273 1.273 20 H -0.270 1.270 21 H -0.270 1.270 22 H 0.078 0.922 23 H 0.042 0.958 24 H 0.058 0.942 25 H 0.348 0.652 26 H 0.351 0.649 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.026 0.974 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.396 0.604 34 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.623 1.440 15.197 15.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.051 4.051 3 H 0.074 0.926 4 C -0.021 4.021 5 H 0.072 0.928 6 N -0.373 5.373 7 C -0.149 4.149 8 C -0.089 4.089 9 N -0.230 5.230 10 C -0.083 4.083 11 C 0.227 3.773 12 O -0.499 6.499 13 N -0.210 5.210 14 C -0.462 4.462 15 H 0.097 0.903 16 C -0.212 4.212 17 N -0.562 5.562 18 Si 0.818 3.182 19 H -0.198 1.198 20 H -0.196 1.196 21 H -0.195 1.195 22 H 0.097 0.903 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.162 0.838 26 H 0.167 0.833 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.229 0.771 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.983 0.017 14.285 15.129 hybrid contribution 1.408 1.406 -0.097 1.992 sum -3.574 1.423 14.188 14.700 Atomic orbital electron populations 1.21507 0.92530 1.02381 1.01044 1.22667 0.97910 0.95429 0.89116 0.92614 1.22055 0.91709 0.94766 0.93550 0.92789 1.58807 1.18104 1.32949 1.27454 1.22558 0.99445 0.98798 0.94134 1.23231 0.90392 0.98969 0.96349 1.64547 1.27587 1.25172 1.05675 1.21975 1.00410 0.94015 0.91883 1.20693 0.83943 0.87964 0.84729 1.90438 1.60972 1.17815 1.80686 1.41927 1.51011 1.12401 1.15630 1.19709 1.33634 0.95929 0.96912 0.90279 1.26052 0.98335 0.96493 1.00355 1.69685 1.47461 1.09216 1.29869 0.84853 0.77953 0.78025 0.77385 1.19802 1.19567 1.19528 0.90339 0.93922 0.92258 0.83774 0.83322 0.89919 0.90869 0.95542 0.90542 0.87720 0.91676 0.77067 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 8.45 71.98 0.61 -2.07 16 2 C 0.06 1.49 3.08 45.06 0.14 1.63 16 3 H 0.06 1.35 7.58 -2.39 -0.02 1.33 16 4 C 0.09 2.01 4.11 45.80 0.19 2.20 16 5 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 6 N -0.84 -14.71 8.08 -165.03 -1.33 -16.05 16 7 C -0.11 -2.96 6.78 31.80 0.22 -2.75 16 8 C 0.04 1.39 5.30 86.65 0.46 1.84 16 9 N -0.50 -17.77 4.89 -862.57 -4.22 -21.99 16 10 C 0.05 1.82 5.52 85.56 0.47 2.29 16 11 C 0.44 21.71 7.49 87.66 0.66 22.37 16 12 O -0.61 -34.51 13.10 -3.07 -0.04 -34.55 16 13 N -0.57 -30.21 5.29 -306.97 -1.62 -31.84 16 14 C -0.33 -19.21 9.68 84.04 0.81 -18.39 16 15 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 16 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 17 N -0.92 -50.35 13.05 21.66 0.28 -50.07 16 18 Si 0.99 43.45 29.55 68.60 2.03 45.47 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 H 0.08 1.29 6.85 -2.39 -0.02 1.28 16 23 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.06 1.58 7.77 -2.39 -0.02 1.56 16 25 H 0.35 4.81 9.08 -89.69 -0.81 4.00 16 26 H 0.35 4.82 7.17 -89.70 -0.64 4.17 16 27 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.07 2.11 8.06 -2.39 -0.02 2.10 16 29 H 0.03 0.96 8.02 -2.39 -0.02 0.94 16 30 H 0.08 3.40 5.97 -2.39 -0.01 3.39 16 31 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 32 H 0.07 2.19 7.82 -2.39 -0.02 2.17 16 33 H 0.40 19.87 7.90 -92.71 -0.73 19.13 16 34 H 0.28 14.14 8.31 -92.70 -0.77 13.37 16 Total: -1.00 -67.03 275.43 -1.95 -68.98 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: -1.06 Total: 33.14 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 4.02 Total: 6.90 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -6.89 Total: -119.94 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -0.04 Total: -34.55 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -67.03 -1.95 -68.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307739291.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.643 kcal (2) G-P(sol) polarization free energy of solvation -67.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds