Wall clock time and date at job start Mon Mar 30 2020 03:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86297 * 109.47217 * 2 1 4 4 C 1.86296 * 109.46913 * 239.99752 * 2 1 3 5 5 C 1.86304 * 109.46792 * 120.00080 * 2 1 3 6 6 N 1.46894 * 109.47005 * 299.99695 * 5 2 1 7 7 C 1.46894 * 111.00059 * 155.00589 * 6 5 2 8 8 C 1.50694 * 109.47213 * 288.78022 * 7 6 5 9 9 H 1.08005 * 120.00007 * 4.50787 * 8 7 6 10 10 C 1.37874 * 120.00548 * 184.50494 * 8 7 6 11 11 N 1.31513 * 119.99907 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 120.00109 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47147 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.46763 * 120.00595 * 12 10 8 15 15 H 1.48500 * 109.47019 * 239.99874 * 12 10 8 16 16 C 1.46903 * 111.00061 * 278.95499 * 6 5 2 17 17 C 1.52999 * 117.50139 * 244.32299 * 16 6 5 18 18 C 1.52998 * 60.00020 * 252.50846 * 17 16 6 19 19 H 1.08999 * 109.46967 * 300.00052 * 1 2 3 20 20 H 1.08998 * 109.47397 * 59.99858 * 1 2 3 21 21 H 1.09004 * 109.47498 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46887 * 180.02562 * 3 2 1 23 23 H 1.09006 * 109.46884 * 300.00025 * 3 2 1 24 24 H 1.08999 * 109.47195 * 60.00087 * 3 2 1 25 25 H 1.09004 * 109.47188 * 300.00372 * 4 2 1 26 26 H 1.09006 * 109.47123 * 60.00015 * 4 2 1 27 27 H 1.08997 * 109.47337 * 180.02562 * 4 2 1 28 28 H 1.08994 * 109.47492 * 60.00135 * 5 2 1 29 29 H 1.09000 * 109.46421 * 179.97438 * 5 2 1 30 30 H 1.09001 * 109.47540 * 48.77640 * 7 6 5 31 31 H 1.09002 * 109.47604 * 168.77738 * 7 6 5 32 32 H 0.97004 * 120.00300 * 179.97438 * 11 10 8 33 33 H 1.09002 * 115.55063 * 30.03282 * 16 6 5 34 34 H 1.09002 * 117.50052 * 0.02562 * 17 16 6 35 35 H 1.08999 * 117.50070 * 145.02126 * 17 16 6 36 36 H 1.08995 * 117.50121 * 252.50584 * 18 17 16 37 37 H 1.09000 * 117.51441 * 107.48260 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4839 -0.8783 1.5212 6 7 1.9943 -0.1858 2.7205 7 6 1.9315 -1.1007 3.8680 8 6 0.8025 -2.0789 3.6694 9 1 0.2391 -2.0734 2.7479 10 6 0.4887 -2.9808 4.6638 11 7 1.1744 -2.9873 5.7860 12 14 -0.9114 -4.1929 4.4177 13 1 -1.5198 -3.9813 3.0798 14 1 -0.3875 -5.5794 4.5092 15 1 -1.9392 -3.9818 5.4685 16 6 2.8244 0.9868 3.0271 17 6 3.6110 0.9720 4.3394 18 6 2.3866 1.8774 4.1917 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 3.5740 1.7564 -0.0005 23 1 2.1207 2.2702 -0.8900 24 1 2.1207 2.2703 0.8900 25 1 2.1205 -1.9060 -1.5211 26 1 2.1206 -0.3645 -2.4111 27 1 3.5739 -0.8787 -1.5209 28 1 2.1206 -1.9059 1.5212 29 1 3.5739 -0.8786 1.5209 30 1 2.8726 -1.6443 3.9513 31 1 1.7605 -0.5288 4.7800 32 1 0.9534 -3.6216 6.4859 33 1 3.2870 1.4730 2.1682 34 1 3.5130 0.0919 4.9750 35 1 4.5914 1.4482 4.3439 36 1 2.5614 2.9492 4.0991 37 1 1.4824 1.5934 4.7302 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308387001.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:53 Heat of formation + Delta-G solvation = -7.286485 kcal Electronic energy + Delta-G solvation = -14367.518099 eV Core-core repulsion = 12188.839374 eV Total energy + Delta-G solvation = -2178.678725 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.140 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -37.90274 -33.40212 -31.98068 -28.48685 -27.52162 -27.08054 -26.92457 -24.22943 -22.46027 -21.59887 -18.86975 -16.57989 -15.15155 -14.86887 -14.18243 -13.46767 -13.04022 -12.94250 -12.79325 -12.47868 -12.27076 -12.19694 -11.99693 -11.90714 -11.72515 -11.44667 -11.19514 -10.92412 -10.72791 -10.60755 -10.12623 -9.83196 -9.75661 -9.51075 -9.41898 -9.04895 -8.97065 -8.34985 -6.89596 -5.98043 -3.98105 3.16612 3.23884 3.28504 3.32681 3.40231 3.45029 4.09970 4.44582 4.52596 5.10142 5.37882 5.58534 5.64162 5.79488 5.83313 5.83608 5.87042 5.93727 6.12911 6.23343 6.24366 6.27293 6.30638 6.52881 6.64268 6.70530 6.83242 6.85525 6.99622 7.37763 7.42620 7.87572 8.18910 8.26613 8.63584 9.10166 9.65316 11.12858 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.021849 B = 0.009804 C = 0.007467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.186530 B = 2855.170226 C = 3749.111532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.435 4.435 2 Si 1.019 2.981 3 C -0.447 4.447 4 C -0.451 4.451 5 C -0.229 4.229 6 N -0.481 5.481 7 C 0.184 3.816 8 C -0.501 4.501 9 H 0.065 0.935 10 C 0.053 3.947 11 N -0.900 5.900 12 Si 0.893 3.107 13 H -0.271 1.271 14 H -0.286 1.286 15 H -0.285 1.285 16 C 0.015 3.985 17 C -0.227 4.227 18 C -0.177 4.177 19 H 0.078 0.922 20 H 0.051 0.949 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.027 0.973 30 H -0.011 1.011 31 H 0.035 0.965 32 H 0.259 0.741 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.922 7.385 -10.422 13.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.543 4.543 2 Si 1.214 2.786 3 C -0.554 4.554 4 C -0.558 4.558 5 C -0.405 4.405 6 N -0.203 5.203 7 C 0.059 3.941 8 C -0.540 4.540 9 H 0.083 0.917 10 C -0.148 4.148 11 N -0.540 5.540 12 Si 0.721 3.279 13 H -0.196 1.196 14 H -0.212 1.212 15 H -0.211 1.211 16 C -0.095 4.095 17 C -0.267 4.267 18 C -0.215 4.215 19 H 0.097 0.903 20 H 0.071 0.929 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.046 0.954 30 H 0.007 0.993 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.453 7.417 -10.348 12.966 hybrid contribution 0.152 -1.068 0.420 1.158 sum 2.606 6.349 -9.927 12.068 Atomic orbital electron populations 1.25957 1.20628 1.04170 1.03542 0.79143 0.68059 0.66554 0.64864 1.26255 1.05241 1.19737 1.04143 1.26179 1.05757 1.08305 1.15562 1.27116 1.00674 1.06402 1.06296 1.62154 1.45392 1.07410 1.05353 1.19945 0.95653 0.90201 0.88284 1.21239 1.15564 1.15242 1.01911 0.91712 1.24983 0.96790 0.97759 0.95230 1.69968 1.40671 1.37226 1.06156 0.86511 0.82249 0.80854 0.78247 1.19589 1.21231 1.21101 1.22955 0.98223 0.96941 0.91360 1.23553 0.95086 1.03480 1.04533 1.22968 0.99159 0.95787 1.03620 0.90287 0.92932 0.91595 0.92016 0.92125 0.90376 0.91334 0.91843 0.91753 0.89317 0.95438 0.99285 0.94656 0.93120 0.86966 0.87537 0.90326 0.89759 0.88460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 -6.43 8.65 101.05 0.87 -5.56 16 2 Si 1.02 13.55 12.29 -169.99 -2.09 11.46 16 3 C -0.45 -5.46 7.28 101.05 0.74 -4.73 16 4 C -0.45 -5.36 8.65 101.05 0.87 -4.49 16 5 C -0.23 -4.22 4.10 60.06 0.25 -3.97 16 6 N -0.48 -10.12 4.09 -162.98 -0.67 -10.79 16 7 C 0.18 4.77 3.32 -4.98 -0.02 4.76 16 8 C -0.50 -14.03 8.36 -34.44 -0.29 -14.31 16 9 H 0.06 1.78 7.58 -52.48 -0.40 1.38 16 10 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 11 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 12 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 16 C 0.02 0.28 5.02 -67.71 -0.34 -0.06 16 17 C -0.23 -4.18 9.54 -26.73 -0.26 -4.44 16 18 C -0.18 -3.11 9.94 -26.73 -0.27 -3.38 16 19 H 0.08 1.30 7.96 -51.93 -0.41 0.88 16 20 H 0.05 0.66 7.96 -51.93 -0.41 0.25 16 21 H 0.06 1.02 7.96 -51.93 -0.41 0.61 16 22 H 0.06 0.70 7.85 -51.93 -0.41 0.30 16 23 H 0.06 0.65 7.96 -51.93 -0.41 0.24 16 24 H 0.08 1.02 6.61 -51.93 -0.34 0.68 16 25 H 0.07 0.83 7.96 -51.93 -0.41 0.41 16 26 H 0.06 0.67 7.96 -51.93 -0.41 0.26 16 27 H 0.06 0.72 7.96 -51.93 -0.41 0.31 16 28 H 0.09 1.82 6.74 -51.93 -0.35 1.47 16 29 H 0.03 0.48 7.74 -51.93 -0.40 0.08 16 30 H -0.01 -0.30 7.80 -51.93 -0.41 -0.70 16 31 H 0.04 0.98 5.85 -51.93 -0.30 0.68 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.11 1.76 5.16 -51.93 -0.27 1.49 16 34 H 0.11 2.29 5.96 -51.93 -0.31 1.98 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.10 1.90 7.58 -51.93 -0.39 1.51 16 LS Contribution 300.06 15.07 4.52 4.52 Total: -1.00 -30.13 300.06 -7.50 -37.64 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.45 Total: 1.35 kcal Atomic # 6 Polarization: -36.23 SS G_CDS: 1.47 Total: -34.76 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.07 Total: -36.99 kcal Atomic # 14 Polarization: 35.36 SS G_CDS: -7.11 Total: 28.25 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.13 -7.50 -37.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308387001.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.352 kcal (2) G-P(sol) polarization free energy of solvation -30.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds