Wall clock time and date at job start Mon Mar 30 2020 03:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86297 * 109.47217 * 2 1 4 4 C 1.86296 * 109.46913 * 239.99752 * 2 1 3 5 5 C 1.86304 * 109.46792 * 120.00080 * 2 1 3 6 6 N 1.46894 * 109.47005 * 299.99695 * 5 2 1 7 7 C 1.46894 * 111.00059 * 155.00589 * 6 5 2 8 8 C 1.50694 * 109.47213 * 288.78022 * 7 6 5 9 9 H 1.08005 * 120.00007 * 4.50787 * 8 7 6 10 10 C 1.37874 * 120.00548 * 184.50494 * 8 7 6 11 11 N 1.31513 * 119.99907 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 120.00109 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47147 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.46763 * 120.00595 * 12 10 8 15 15 H 1.48500 * 109.47019 * 239.99874 * 12 10 8 16 16 C 1.46903 * 111.00061 * 278.95499 * 6 5 2 17 17 C 1.52999 * 117.50139 * 244.32299 * 16 6 5 18 18 C 1.52998 * 60.00020 * 252.50846 * 17 16 6 19 19 H 1.08999 * 109.46967 * 300.00052 * 1 2 3 20 20 H 1.08998 * 109.47397 * 59.99858 * 1 2 3 21 21 H 1.09004 * 109.47498 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46887 * 180.02562 * 3 2 1 23 23 H 1.09006 * 109.46884 * 300.00025 * 3 2 1 24 24 H 1.08999 * 109.47195 * 60.00087 * 3 2 1 25 25 H 1.09004 * 109.47188 * 300.00372 * 4 2 1 26 26 H 1.09006 * 109.47123 * 60.00015 * 4 2 1 27 27 H 1.08997 * 109.47337 * 180.02562 * 4 2 1 28 28 H 1.08994 * 109.47492 * 60.00135 * 5 2 1 29 29 H 1.09000 * 109.46421 * 179.97438 * 5 2 1 30 30 H 1.09001 * 109.47540 * 48.77640 * 7 6 5 31 31 H 1.09002 * 109.47604 * 168.77738 * 7 6 5 32 32 H 0.97004 * 120.00300 * 179.97438 * 11 10 8 33 33 H 1.09002 * 115.55063 * 30.03282 * 16 6 5 34 34 H 1.09002 * 117.50052 * 0.02562 * 17 16 6 35 35 H 1.08999 * 117.50070 * 145.02126 * 17 16 6 36 36 H 1.08995 * 117.50121 * 252.50584 * 18 17 16 37 37 H 1.09000 * 117.51441 * 107.48260 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4839 -0.8783 1.5212 6 7 1.9943 -0.1858 2.7205 7 6 1.9315 -1.1007 3.8680 8 6 0.8025 -2.0789 3.6694 9 1 0.2391 -2.0734 2.7479 10 6 0.4887 -2.9808 4.6638 11 7 1.1744 -2.9873 5.7860 12 14 -0.9114 -4.1929 4.4177 13 1 -1.5198 -3.9813 3.0798 14 1 -0.3875 -5.5794 4.5092 15 1 -1.9392 -3.9818 5.4685 16 6 2.8244 0.9868 3.0271 17 6 3.6110 0.9720 4.3394 18 6 2.3866 1.8774 4.1917 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 3.5740 1.7564 -0.0005 23 1 2.1207 2.2702 -0.8900 24 1 2.1207 2.2703 0.8900 25 1 2.1205 -1.9060 -1.5211 26 1 2.1206 -0.3645 -2.4111 27 1 3.5739 -0.8787 -1.5209 28 1 2.1206 -1.9059 1.5212 29 1 3.5739 -0.8786 1.5209 30 1 2.8726 -1.6443 3.9513 31 1 1.7605 -0.5288 4.7800 32 1 0.9534 -3.6216 6.4859 33 1 3.2870 1.4730 2.1682 34 1 3.5130 0.0919 4.9750 35 1 4.5914 1.4482 4.3439 36 1 2.5614 2.9492 4.0991 37 1 1.4824 1.5934 4.7302 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308387001.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:53 Heat of formation + Delta-G solvation = -23.264870 kcal Electronic energy + Delta-G solvation = -14368.210974 eV Core-core repulsion = 12188.839374 eV Total energy + Delta-G solvation = -2179.371600 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.140 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.51768 -35.32109 -33.89640 -29.68204 -29.05510 -28.22110 -28.14457 -25.99676 -24.27996 -23.10436 -20.55090 -18.66559 -16.89403 -16.73338 -15.97025 -15.02772 -14.52060 -14.20121 -13.99899 -13.84023 -13.64275 -13.45267 -13.27792 -13.06491 -12.96946 -12.84797 -12.83258 -12.77565 -12.47239 -12.33093 -12.02773 -11.59351 -11.13919 -11.06904 -10.69411 -10.58500 -10.52800 -10.35646 -8.60091 -8.20048 -6.29596 1.36362 1.37106 1.50893 2.00057 2.22446 2.24032 2.38649 2.97375 3.00575 3.11285 3.57974 4.09050 4.17406 4.32275 4.68705 4.80601 4.83317 4.93902 4.95027 4.99793 5.01575 5.03443 5.05449 5.10192 5.14967 5.34761 5.35386 5.39020 5.64032 5.67495 5.78298 5.81863 6.11093 6.41951 6.75365 6.88521 7.39319 8.90578 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.021849 B = 0.009804 C = 0.007467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.186530 B = 2855.170226 C = 3749.111532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.081 2.919 3 C -0.443 4.443 4 C -0.447 4.447 5 C -0.263 4.263 6 N -0.487 5.487 7 C 0.203 3.797 8 C -0.517 4.517 9 H 0.064 0.936 10 C -0.003 4.003 11 N -0.937 5.937 12 Si 0.964 3.036 13 H -0.261 1.261 14 H -0.279 1.279 15 H -0.278 1.278 16 C 0.007 3.993 17 C -0.235 4.235 18 C -0.167 4.167 19 H 0.055 0.945 20 H 0.077 0.923 21 H 0.049 0.951 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.027 0.973 30 H -0.050 1.050 31 H 0.007 0.993 32 H 0.262 0.738 33 H 0.150 0.850 34 H 0.062 0.938 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.889 8.896 -13.097 16.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.271 2.729 3 C -0.552 4.552 4 C -0.555 4.555 5 C -0.432 4.432 6 N -0.208 5.208 7 C 0.077 3.923 8 C -0.555 4.555 9 H 0.083 0.917 10 C -0.201 4.201 11 N -0.579 5.579 12 Si 0.789 3.211 13 H -0.184 1.184 14 H -0.205 1.205 15 H -0.204 1.204 16 C -0.102 4.102 17 C -0.274 4.274 18 C -0.205 4.205 19 H 0.075 0.925 20 H 0.096 0.904 21 H 0.068 0.932 22 H 0.094 0.906 23 H 0.103 0.897 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.046 0.954 30 H -0.032 1.032 31 H 0.025 0.975 32 H 0.071 0.929 33 H 0.168 0.832 34 H 0.080 0.920 35 H 0.130 0.870 36 H 0.145 0.855 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.412 8.901 -12.973 15.917 hybrid contribution 0.207 -1.559 1.297 2.038 sum 2.619 7.343 -11.676 14.040 Atomic orbital electron populations 1.26190 1.22810 1.03175 1.03658 0.78285 0.65730 0.66981 0.61884 1.26124 1.06230 1.17779 1.05052 1.26069 1.06477 1.07864 1.15124 1.27975 1.01067 1.05877 1.08292 1.62151 1.47146 1.07276 1.04239 1.19541 0.93133 0.90116 0.89482 1.21582 1.16039 1.15951 1.01931 0.91746 1.25931 0.99544 0.99738 0.94844 1.70109 1.42436 1.38225 1.07085 0.85409 0.78811 0.78256 0.78663 1.18449 1.20459 1.20405 1.23270 0.98164 0.96094 0.92685 1.23478 0.97247 1.02678 1.03992 1.23026 0.97303 0.97819 1.02334 0.92549 0.90352 0.93199 0.90556 0.89681 0.91085 0.91920 0.89540 0.90705 0.92757 0.95429 1.03231 0.97499 0.92906 0.83246 0.91950 0.87035 0.85524 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -12.84 8.65 113.37 0.98 -11.86 16 2 Si 1.08 26.37 12.29 68.60 0.84 27.22 16 3 C -0.44 -8.83 7.28 113.37 0.83 -8.00 16 4 C -0.45 -9.04 8.65 113.37 0.98 -8.06 16 5 C -0.26 -9.91 4.10 127.69 0.52 -9.38 16 6 N -0.49 -21.21 4.09 -669.53 -2.74 -23.95 16 7 C 0.20 11.30 3.32 85.56 0.28 11.58 16 8 C -0.52 -30.40 8.36 25.60 0.21 -30.19 16 9 H 0.06 3.70 7.58 -2.91 -0.02 3.67 16 10 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 11 N -0.94 -58.63 13.29 21.45 0.28 -58.34 16 12 Si 0.96 45.82 29.54 68.60 2.03 47.85 16 13 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 14 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 15 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 16 C 0.01 0.26 5.02 44.91 0.23 0.49 16 17 C -0.23 -8.77 9.54 30.59 0.29 -8.48 16 18 C -0.17 -5.77 9.94 30.59 0.30 -5.47 16 19 H 0.06 1.83 7.96 -2.39 -0.02 1.81 16 20 H 0.08 1.77 7.96 -2.39 -0.02 1.75 16 21 H 0.05 1.53 7.96 -2.38 -0.02 1.51 16 22 H 0.08 1.35 7.85 -2.39 -0.02 1.33 16 23 H 0.08 1.36 7.96 -2.38 -0.02 1.34 16 24 H 0.07 1.57 6.61 -2.39 -0.02 1.55 16 25 H 0.06 1.36 7.96 -2.38 -0.02 1.34 16 26 H 0.09 1.41 7.96 -2.38 -0.02 1.39 16 27 H 0.07 1.39 7.96 -2.39 -0.02 1.37 16 28 H 0.05 2.35 6.74 -2.39 -0.02 2.34 16 29 H 0.03 0.98 7.74 -2.39 -0.02 0.96 16 30 H -0.05 -3.08 7.80 -2.39 -0.02 -3.09 16 31 H 0.01 0.42 5.85 -2.39 -0.01 0.40 16 32 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 33 H 0.15 4.25 5.16 -2.39 -0.01 4.23 16 34 H 0.06 2.89 5.96 -2.39 -0.01 2.88 16 35 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 36 H 0.13 3.30 8.14 -2.39 -0.02 3.28 16 37 H 0.07 2.75 7.58 -2.39 -0.02 2.73 16 Total: -1.00 -69.55 300.06 6.52 -63.03 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 1.01 Total: 13.31 kcal Atomic # 6 Polarization: -74.21 SS G_CDS: 5.09 Total: -69.11 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -2.45 Total: -82.29 kcal Atomic # 14 Polarization: 72.20 SS G_CDS: 2.87 Total: 75.06 kcal Total: -69.55 6.52 -63.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308387001.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.764 kcal (2) G-P(sol) polarization free energy of solvation -69.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds