Wall clock time and date at job start Mon Mar 30 2020 03:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99831 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.46930 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47042 * 180.02562 * 13 12 11 15 15 C 1.52995 * 109.47411 * 179.97438 * 14 13 12 16 16 H 1.09000 * 109.82324 * 305.57078 * 15 14 13 17 17 C 1.54375 * 109.83375 * 184.58276 * 15 14 13 18 18 C 1.55306 * 102.25647 * 219.12803 * 17 15 14 19 19 C 1.54953 * 100.94023 * 34.13710 * 18 17 15 20 20 O 1.43243 * 109.82778 * 66.45180 * 15 14 13 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 23 23 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 24 24 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 25 25 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 26 26 H 1.00897 * 111.00046 * 56.04666 * 11 10 9 27 27 H 1.08991 * 109.47315 * 299.99753 * 12 11 10 28 28 H 1.08999 * 109.47003 * 60.00043 * 12 11 10 29 29 H 1.08999 * 109.46917 * 299.99815 * 13 12 11 30 30 H 1.08999 * 109.47090 * 60.00283 * 13 12 11 31 31 H 1.09007 * 109.47101 * 300.00196 * 14 13 12 32 32 H 1.09004 * 109.47575 * 59.99912 * 14 13 12 33 33 H 1.09000 * 110.85272 * 337.32267 * 17 15 14 34 34 H 1.09006 * 110.84574 * 100.94291 * 17 15 14 35 35 H 1.08995 * 111.12732 * 276.21754 * 18 17 15 36 36 H 1.09001 * 111.16214 * 152.06714 * 18 17 15 37 37 H 1.08997 * 110.31009 * 204.63837 * 19 18 17 38 38 H 1.09001 * 110.30709 * 82.46615 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 -0.0001 12 6 2.4354 -6.0758 0.0005 13 6 1.6353 -7.3800 0.0005 14 6 2.5981 -8.5690 0.0018 15 6 1.7982 -9.8732 0.0024 16 1 1.0961 -9.8757 0.8361 17 6 2.7581 -11.0764 0.1197 18 6 2.1103 -12.1100 -0.8416 19 6 1.5379 -11.1747 -1.9365 20 8 1.0857 -10.0067 -1.2331 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8897 24 1 2.8720 -3.6043 -0.8894 25 1 2.8720 -3.6043 0.8906 26 1 0.8747 -4.9841 -0.7817 27 1 3.0639 -6.0348 -0.8890 28 1 3.0627 -6.0349 0.8910 29 1 1.0070 -7.4208 0.8903 30 1 1.0077 -7.4212 -0.8897 31 1 3.2269 -8.5284 -0.8878 32 1 3.2255 -8.5277 0.8922 33 1 3.7595 -10.8081 -0.2169 34 1 2.7800 -11.4571 1.1409 35 1 1.3151 -12.6648 -0.3439 36 1 2.8588 -12.7862 -1.2547 37 1 0.7035 -11.6559 -2.4467 38 1 2.3165 -10.9081 -2.6512 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308502806.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:33 Heat of formation + Delta-G solvation = -102.543601 kcal Electronic energy + Delta-G solvation = -15250.583789 eV Core-core repulsion = 12704.567958 eV Total energy + Delta-G solvation = -2546.015831 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.46999 -38.05683 -35.86185 -34.36544 -33.02509 -31.43146 -29.26329 -26.45459 -25.00005 -23.02938 -22.85517 -22.07654 -21.53497 -18.92284 -17.95340 -17.14636 -16.84891 -16.02505 -15.72072 -15.55405 -15.45507 -14.94747 -14.40867 -14.25406 -14.16199 -13.60398 -13.28598 -13.06160 -12.71725 -12.66425 -12.32573 -12.23026 -12.03445 -11.97877 -11.86432 -11.70757 -11.55552 -11.42216 -10.74405 -10.56964 -10.44742 -9.42196 -8.72577 -6.43089 1.51823 1.61934 1.79744 2.55474 2.93251 3.13649 3.21166 3.61144 3.78072 3.97672 4.01484 4.16193 4.27222 4.29633 4.35995 4.42200 4.48222 4.57572 4.71917 4.80877 4.82576 4.84710 4.89630 4.91918 5.00133 5.03965 5.19635 5.20244 5.33532 5.37721 5.40196 5.88131 6.11632 6.14985 6.16416 6.37687 6.55828 7.40208 8.68799 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.086038 B = 0.003258 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 325.358318 B = 8591.201736 C = 8721.776596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.040 4.040 3 Si 1.124 2.876 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.281 1.281 7 C -0.623 4.623 8 H 0.052 0.948 9 C 0.015 3.985 10 C 0.089 3.911 11 N -0.702 5.702 12 C 0.060 3.940 13 C -0.104 4.104 14 C -0.120 4.120 15 C 0.074 3.926 16 H 0.077 0.923 17 C -0.148 4.148 18 C -0.151 4.151 19 C 0.038 3.962 20 O -0.407 6.407 21 H 0.255 0.745 22 H -0.008 1.008 23 H -0.013 1.013 24 H 0.017 0.983 25 H 0.059 0.941 26 H 0.337 0.663 27 H 0.025 0.975 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.397 -24.925 -1.143 26.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.237 4.237 3 Si 0.945 3.055 4 H -0.196 1.196 5 H -0.193 1.193 6 H -0.206 1.206 7 C -0.661 4.661 8 H 0.070 0.930 9 C -0.023 4.023 10 C -0.040 4.040 11 N -0.332 5.332 12 C -0.068 4.068 13 C -0.142 4.142 14 C -0.158 4.158 15 C 0.017 3.983 16 H 0.095 0.905 17 C -0.186 4.186 18 C -0.189 4.189 19 C -0.038 4.038 20 O -0.327 6.327 21 H 0.065 0.935 22 H 0.010 0.990 23 H 0.006 0.994 24 H 0.035 0.965 25 H 0.078 0.922 26 H 0.154 0.846 27 H 0.044 0.956 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.980 -23.179 -0.528 24.213 hybrid contribution 0.227 -1.625 -0.922 1.882 sum 7.207 -24.805 -1.450 25.871 Atomic orbital electron populations 1.70879 1.07997 1.29923 1.48587 1.27566 0.96615 1.07058 0.92500 0.82860 0.74107 0.70635 0.77940 1.19579 1.19258 1.20641 1.22467 0.94765 0.93321 1.55540 0.92952 1.19113 0.95029 0.93830 0.94311 1.21654 0.95336 0.88214 0.98780 1.60528 1.20669 1.02059 1.49975 1.22031 0.94469 0.90108 1.00241 1.21405 0.98160 0.92583 1.02005 1.21901 0.97710 0.93205 1.03023 1.22884 0.93589 0.95062 0.86790 0.90459 1.23196 0.99312 0.94114 1.01938 1.23264 1.01346 0.98013 0.96227 1.23566 0.99657 0.85329 0.95207 1.88446 1.63044 1.47001 1.34225 0.93526 0.99008 0.99443 0.96457 0.92245 0.84583 0.95633 0.91066 0.91866 0.92849 0.91766 0.89434 0.89774 0.88582 0.90009 0.88187 0.89229 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.22 13.65 21.45 0.29 -59.93 16 2 C -0.04 -2.41 5.46 84.65 0.46 -1.95 16 3 Si 1.12 51.48 29.90 68.60 2.05 53.53 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.62 -37.20 9.11 25.60 0.23 -36.96 16 8 H 0.05 3.02 7.74 -2.91 -0.02 2.99 16 9 C 0.01 0.81 4.54 29.85 0.14 0.95 16 10 C 0.09 4.01 5.62 86.30 0.49 4.50 16 11 N -0.70 -26.85 6.50 -513.90 -3.34 -30.19 16 12 C 0.06 1.82 5.69 86.30 0.49 2.31 16 13 C -0.10 -2.66 5.38 30.60 0.16 -2.50 16 14 C -0.12 -2.37 4.78 30.59 0.15 -2.22 16 15 C 0.07 1.36 3.52 31.06 0.11 1.47 16 16 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 17 C -0.15 -1.80 6.54 31.85 0.21 -1.60 16 18 C -0.15 -1.64 7.16 32.05 0.23 -1.42 16 19 C 0.04 0.60 7.78 72.65 0.57 1.16 16 20 O -0.41 -9.29 10.64 -148.98 -1.58 -10.88 16 21 H 0.26 16.72 7.22 -92.71 -0.67 16.05 16 22 H -0.01 -0.51 8.01 -2.39 -0.02 -0.52 16 23 H -0.01 -0.74 8.01 -2.38 -0.02 -0.76 16 24 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 26 H 0.34 12.68 8.73 -89.70 -0.78 11.89 16 27 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.05 1.51 7.88 -2.39 -0.02 1.49 16 31 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.08 0.94 7.85 -2.39 -0.02 0.92 16 34 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -69.60 308.89 0.97 -68.63 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.32 Total: 15.09 kcal Atomic # 6 Polarization: -39.48 SS G_CDS: 3.23 Total: -36.25 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -3.05 Total: -90.13 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -1.58 Total: -10.88 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.05 Total: 53.53 kcal Total: -69.60 0.97 -68.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308502806.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.912 kcal (2) G-P(sol) polarization free energy of solvation -69.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds