Wall clock time and date at job start Mon Mar 30 2020 03:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00315 * 2 1 4 4 H 1.48507 * 109.47458 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47284 * 300.00183 * 3 2 1 6 6 H 1.48499 * 109.47244 * 59.99834 * 3 2 1 7 7 C 1.37880 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00435 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99766 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47092 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99787 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46930 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47540 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47540 * 179.97438 * 13 12 11 15 15 C 1.53175 * 109.53913 * 65.44548 * 14 13 12 16 16 C 1.53092 * 109.16179 * 176.85000 * 15 14 13 17 17 O 1.42910 * 109.41107 * 302.39040 * 16 15 14 18 18 C 1.42900 * 114.09727 * 61.16189 * 17 16 15 19 19 C 1.53090 * 109.41229 * 298.83586 * 18 17 16 20 20 H 0.96995 * 119.99587 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47275 * 60.00620 * 9 7 2 22 22 H 1.09001 * 109.47354 * 300.00545 * 9 7 2 23 23 H 1.00901 * 110.99854 * 303.95440 * 10 9 7 24 24 H 1.08995 * 109.47122 * 60.00319 * 11 10 9 25 25 H 1.08997 * 109.47329 * 299.99628 * 11 10 9 26 26 H 1.09009 * 109.47020 * 59.99847 * 12 11 10 27 27 H 1.09005 * 109.47341 * 300.00111 * 12 11 10 28 28 H 1.09005 * 109.46474 * 59.99952 * 13 12 11 29 29 H 1.09005 * 109.47030 * 300.00468 * 13 12 11 30 30 H 1.08997 * 109.61228 * 305.22843 * 14 13 12 31 31 H 1.09006 * 109.52647 * 296.75300 * 15 14 13 32 32 H 1.08998 * 109.52537 * 56.94192 * 15 14 13 33 33 H 1.08998 * 109.48147 * 182.40843 * 16 15 14 34 34 H 1.08997 * 109.48550 * 62.37144 * 16 15 14 35 35 H 1.09003 * 109.47953 * 178.86010 * 18 17 16 36 36 H 1.08995 * 109.49265 * 58.82602 * 18 17 16 37 37 H 1.09001 * 109.52724 * 297.70937 * 19 18 17 38 38 H 1.09000 * 109.52338 * 177.51272 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5052 -4.9071 -0.0011 12 6 2.5301 -6.0431 -0.0018 13 6 1.8007 -7.3881 -0.0018 14 6 2.8256 -8.5241 -0.0030 15 6 3.6152 -8.5032 1.3094 16 6 4.5827 -9.6894 1.3326 17 8 3.8473 -10.9052 1.1804 18 6 3.1270 -11.0012 -0.0501 19 6 2.1010 -9.8678 -0.1288 20 1 -0.4849 0.8400 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6246 -2.5570 0.8896 23 1 2.8405 -3.5487 -0.7819 24 1 0.8807 -4.9812 -0.8914 25 1 0.8801 -4.9818 0.8886 26 1 3.1551 -5.9691 0.8883 27 1 3.1550 -5.9682 -0.8918 28 1 1.1755 -7.4622 -0.8916 29 1 1.1761 -7.4627 0.8884 30 1 3.5098 -8.3987 -0.8422 31 1 4.1782 -7.5725 1.3811 32 1 2.9260 -8.5787 2.1504 33 1 5.1169 -9.7042 2.2826 34 1 5.2971 -9.5919 0.5152 35 1 2.6125 -11.9611 -0.0961 36 1 3.8222 -10.9210 -0.8857 37 1 1.3812 -9.9708 0.6832 38 1 1.5811 -9.9129 -1.0858 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308528548.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:00 Heat of formation + Delta-G solvation = -80.740865 kcal Electronic energy + Delta-G solvation = -15489.498881 eV Core-core repulsion = 12944.428488 eV Total energy + Delta-G solvation = -2545.070393 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.62075 -36.48220 -34.81577 -32.65856 -31.33656 -30.77496 -27.36014 -25.32425 -23.76450 -22.72831 -21.26810 -20.76146 -20.07442 -16.47891 -16.24166 -16.16890 -15.53576 -14.91635 -14.74719 -14.37504 -14.12454 -13.79502 -13.15903 -12.88723 -12.51891 -12.35211 -11.79600 -11.70292 -11.49949 -11.40211 -11.04256 -10.96128 -10.69588 -10.56943 -10.54104 -10.35801 -10.19045 -9.88771 -9.58318 -9.13450 -8.47807 -7.27031 -6.02715 -4.04652 3.31221 3.38256 3.43613 3.69461 4.42105 4.50611 4.57825 4.71271 4.84333 5.00116 5.17426 5.24815 5.26227 5.33183 5.37650 5.47925 5.48722 5.59524 5.65070 5.82378 5.88211 5.92752 5.99117 6.01876 6.14831 6.18469 6.31593 6.57940 6.61597 7.00192 7.27573 7.43697 7.79966 8.14193 8.41863 8.63856 9.05194 9.60316 11.08561 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.070511 B = 0.003602 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.003934 B = 7772.599363 C = 8026.925722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.192 3.808 10 N -0.692 5.692 11 C 0.058 3.942 12 C -0.116 4.116 13 C -0.111 4.111 14 C -0.089 4.089 15 C -0.153 4.153 16 C 0.060 3.940 17 O -0.387 6.387 18 C 0.061 3.939 19 C -0.152 4.152 20 H 0.261 0.739 21 H -0.015 1.015 22 H 0.027 0.973 23 H 0.327 0.673 24 H 0.015 0.985 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.894 -19.988 -0.647 20.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.322 5.322 11 C -0.072 4.072 12 C -0.154 4.154 13 C -0.150 4.150 14 C -0.107 4.107 15 C -0.191 4.191 16 C -0.017 4.017 17 O -0.306 6.306 18 C -0.016 4.016 19 C -0.190 4.190 20 H 0.070 0.930 21 H 0.003 0.997 22 H 0.045 0.955 23 H 0.143 0.857 24 H 0.033 0.967 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.812 -19.990 0.186 20.819 hybrid contribution -0.087 1.211 -1.154 1.675 sum 5.726 -18.779 -0.967 19.656 Atomic orbital electron populations 1.69978 1.06104 1.26665 1.51062 1.25011 0.94896 0.99428 0.95373 0.86418 0.80060 0.83286 0.77502 1.19635 1.21090 1.20977 1.21246 0.93560 0.90281 1.50126 0.91908 1.19561 0.90658 0.87507 0.95714 1.60680 1.21267 1.01479 1.48781 1.21889 0.95419 0.90347 0.99513 1.21618 0.98483 0.93133 1.02148 1.21591 0.97535 0.93788 1.02041 1.21207 0.97359 0.94398 0.97741 1.22306 0.99350 0.99061 0.98343 1.22615 0.93224 0.84123 1.01742 1.87913 1.65106 1.38612 1.38932 1.22568 0.93612 0.98867 0.86576 1.22264 0.98837 0.95063 1.02813 0.92973 0.99685 0.95485 0.85711 0.96695 0.92016 0.91221 0.92626 0.92123 0.91871 0.91204 0.90178 0.90988 0.88992 0.93336 0.89156 0.93380 0.91007 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.51 -14.89 9.32 -34.44 -0.32 -15.21 16 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.19 5.21 5.44 -4.97 -0.03 5.18 16 10 N -0.69 -15.31 6.49 -115.06 -0.75 -16.06 16 11 C 0.06 1.06 5.69 -3.82 -0.02 1.04 16 12 C -0.12 -1.62 5.24 -26.73 -0.14 -1.76 16 13 C -0.11 -1.29 4.69 -26.73 -0.13 -1.41 16 14 C -0.09 -0.88 2.27 -90.44 -0.21 -1.09 16 15 C -0.15 -1.52 5.10 -26.59 -0.14 -1.66 16 16 C 0.06 0.56 6.84 37.21 0.25 0.81 16 17 O -0.39 -4.23 10.77 -35.23 -0.38 -4.61 16 18 C 0.06 0.53 6.84 37.20 0.25 0.78 16 19 C -0.15 -1.36 5.42 -26.59 -0.14 -1.51 16 20 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 21 H -0.01 -0.42 8.14 -51.93 -0.42 -0.84 16 22 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.33 6.87 8.72 -39.29 -0.34 6.52 16 24 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.07 0.99 6.66 -51.92 -0.35 0.65 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.80 6.75 -51.93 -0.35 0.45 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 304.10 15.07 4.58 4.58 Total: -1.00 -30.92 304.10 -8.46 -39.38 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.93 Total: -0.29 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -0.71 Total: -13.35 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: -0.01 Total: -42.61 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.38 Total: -4.61 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.92 -8.46 -39.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308528548.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.358 kcal (2) G-P(sol) polarization free energy of solvation -30.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds