Wall clock time and date at job start Mon Mar 30 2020 03:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00315 * 2 1 4 4 H 1.48507 * 109.47458 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47284 * 300.00183 * 3 2 1 6 6 H 1.48499 * 109.47244 * 59.99834 * 3 2 1 7 7 C 1.37880 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00435 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99766 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47092 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99787 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46930 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47540 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47540 * 179.97438 * 13 12 11 15 15 C 1.53175 * 109.53913 * 65.44548 * 14 13 12 16 16 C 1.53092 * 109.16179 * 176.85000 * 15 14 13 17 17 O 1.42910 * 109.41107 * 302.39040 * 16 15 14 18 18 C 1.42900 * 114.09727 * 61.16189 * 17 16 15 19 19 C 1.53090 * 109.41229 * 298.83586 * 18 17 16 20 20 H 0.96995 * 119.99587 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47275 * 60.00620 * 9 7 2 22 22 H 1.09001 * 109.47354 * 300.00545 * 9 7 2 23 23 H 1.00901 * 110.99854 * 303.95440 * 10 9 7 24 24 H 1.08995 * 109.47122 * 60.00319 * 11 10 9 25 25 H 1.08997 * 109.47329 * 299.99628 * 11 10 9 26 26 H 1.09009 * 109.47020 * 59.99847 * 12 11 10 27 27 H 1.09005 * 109.47341 * 300.00111 * 12 11 10 28 28 H 1.09005 * 109.46474 * 59.99952 * 13 12 11 29 29 H 1.09005 * 109.47030 * 300.00468 * 13 12 11 30 30 H 1.08997 * 109.61228 * 305.22843 * 14 13 12 31 31 H 1.09006 * 109.52647 * 296.75300 * 15 14 13 32 32 H 1.08998 * 109.52537 * 56.94192 * 15 14 13 33 33 H 1.08998 * 109.48147 * 182.40843 * 16 15 14 34 34 H 1.08997 * 109.48550 * 62.37144 * 16 15 14 35 35 H 1.09003 * 109.47953 * 178.86010 * 18 17 16 36 36 H 1.08995 * 109.49265 * 58.82602 * 18 17 16 37 37 H 1.09001 * 109.52724 * 297.70937 * 19 18 17 38 38 H 1.09000 * 109.52338 * 177.51272 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5052 -4.9071 -0.0011 12 6 2.5301 -6.0431 -0.0018 13 6 1.8007 -7.3881 -0.0018 14 6 2.8256 -8.5241 -0.0030 15 6 3.6152 -8.5032 1.3094 16 6 4.5827 -9.6894 1.3326 17 8 3.8473 -10.9052 1.1804 18 6 3.1270 -11.0012 -0.0501 19 6 2.1010 -9.8678 -0.1288 20 1 -0.4849 0.8400 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6246 -2.5570 0.8896 23 1 2.8405 -3.5487 -0.7819 24 1 0.8807 -4.9812 -0.8914 25 1 0.8801 -4.9818 0.8886 26 1 3.1551 -5.9691 0.8883 27 1 3.1550 -5.9682 -0.8918 28 1 1.1755 -7.4622 -0.8916 29 1 1.1761 -7.4627 0.8884 30 1 3.5098 -8.3987 -0.8422 31 1 4.1782 -7.5725 1.3811 32 1 2.9260 -8.5787 2.1504 33 1 5.1169 -9.7042 2.2826 34 1 5.2971 -9.5919 0.5152 35 1 2.6125 -11.9611 -0.0961 36 1 3.8222 -10.9210 -0.8857 37 1 1.3812 -9.9708 0.6832 38 1 1.5811 -9.9129 -1.0858 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308528548.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:59 Heat of formation + Delta-G solvation = -101.251990 kcal Electronic energy + Delta-G solvation = -15490.388310 eV Core-core repulsion = 12944.428488 eV Total energy + Delta-G solvation = -2545.959822 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.38750 -37.84699 -36.19630 -34.61392 -32.32699 -31.89252 -29.02675 -26.79406 -24.55894 -24.10261 -23.06896 -21.93570 -20.87625 -18.57574 -17.08124 -17.02109 -16.82177 -16.60327 -15.82428 -15.50717 -15.37814 -15.02019 -14.65115 -14.32783 -13.92091 -13.35079 -13.32649 -12.97933 -12.95207 -12.65983 -12.49019 -12.26691 -12.17854 -11.97458 -11.79217 -11.60291 -11.28648 -11.16166 -11.04654 -10.68763 -10.38286 -9.15198 -8.24684 -6.36581 1.40658 1.41725 1.55897 2.39141 3.01328 3.08468 3.46102 3.77911 3.89120 3.92889 4.11847 4.17054 4.31997 4.35853 4.52112 4.53275 4.62774 4.71222 4.77821 4.82594 4.88171 4.95996 4.99662 5.06359 5.06832 5.18380 5.21530 5.25980 5.31115 5.45681 5.52668 5.60750 5.99795 6.30420 6.42530 6.70917 6.87428 7.34803 8.87418 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.070511 B = 0.003602 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.003934 B = 7772.599363 C = 8026.925722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.977 3.023 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.205 3.795 10 N -0.691 5.691 11 C 0.057 3.943 12 C -0.103 4.103 13 C -0.105 4.105 14 C -0.085 4.085 15 C -0.152 4.152 16 C 0.058 3.942 17 O -0.407 6.407 18 C 0.057 3.943 19 C -0.149 4.149 20 H 0.266 0.734 21 H -0.040 1.040 22 H -0.003 1.003 23 H 0.335 0.665 24 H 0.014 0.986 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.236 -20.316 -1.117 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.078 3.922 10 N -0.322 5.322 11 C -0.072 4.072 12 C -0.141 4.141 13 C -0.143 4.143 14 C -0.104 4.104 15 C -0.190 4.190 16 C -0.018 4.018 17 O -0.326 6.326 18 C -0.020 4.020 19 C -0.187 4.187 20 H 0.075 0.925 21 H -0.023 1.023 22 H 0.016 0.984 23 H 0.152 0.848 24 H 0.032 0.968 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.122 0.878 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.165 -20.347 -0.287 21.573 hybrid contribution -0.545 1.260 -1.006 1.702 sum 6.620 -19.087 -1.293 20.243 Atomic orbital electron populations 1.70105 1.07910 1.28041 1.51507 1.26022 0.95847 1.03615 0.94472 0.85219 0.78920 0.77944 0.77807 1.18506 1.20167 1.20334 1.21595 0.93883 0.91388 1.50668 0.91595 1.19229 0.90745 0.89215 0.93058 1.60567 1.20561 1.01794 1.49234 1.22001 0.96435 0.89833 0.98950 1.21502 0.97424 0.92590 1.02536 1.21523 0.97762 0.92946 1.02076 1.21170 0.97008 0.94248 0.97949 1.22285 0.99336 0.99380 0.97989 1.22686 0.93091 0.83363 1.02661 1.87889 1.65500 1.39199 1.40052 1.22716 0.93682 0.99379 0.86182 1.22236 0.98746 0.94484 1.03200 0.92549 1.02264 0.98443 0.84785 0.96818 0.92997 0.91332 0.91689 0.91677 0.92321 0.90580 0.90341 0.91972 0.88203 0.92364 0.87837 0.92376 0.91772 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.46 13.29 21.45 0.28 -57.17 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.98 44.66 29.54 68.60 2.03 46.69 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.54 -31.37 9.32 25.60 0.24 -31.13 16 8 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 9 C 0.21 11.43 5.44 85.56 0.47 11.89 16 10 N -0.69 -30.76 6.49 -517.93 -3.36 -34.12 16 11 C 0.06 2.08 5.69 86.30 0.49 2.57 16 12 C -0.10 -2.75 5.24 30.59 0.16 -2.59 16 13 C -0.10 -2.28 4.69 30.59 0.14 -2.14 16 14 C -0.09 -1.55 2.27 -10.68 -0.02 -1.57 16 15 C -0.15 -2.83 5.10 30.68 0.16 -2.68 16 16 C 0.06 1.00 6.84 72.01 0.49 1.49 16 17 O -0.41 -8.26 10.77 -148.98 -1.60 -9.87 16 18 C 0.06 0.88 6.84 72.01 0.49 1.37 16 19 C -0.15 -2.39 5.42 30.68 0.17 -2.22 16 20 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 21 H -0.04 -2.40 8.14 -2.39 -0.02 -2.42 16 22 H 0.00 -0.16 8.14 -2.39 -0.02 -0.17 16 23 H 0.34 13.96 8.72 -89.69 -0.78 13.18 16 24 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.07 1.87 6.66 -2.38 -0.02 1.86 16 27 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.47 6.75 -2.38 -0.02 1.46 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -65.83 304.10 0.81 -65.01 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.22 Total: 14.09 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 3.24 Total: -24.63 kcal Atomic # 7 Polarization: -88.22 SS G_CDS: -3.08 Total: -91.29 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -1.60 Total: -9.87 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -65.83 0.81 -65.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308528548.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.238 kcal (2) G-P(sol) polarization free energy of solvation -65.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds