Wall clock time and date at job start Mon Mar 30 2020 03:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00118 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00179 * 3 2 1 6 6 H 1.48498 * 109.46997 * 149.99989 * 3 2 1 7 7 C 1.37885 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46891 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.47053 * 179.97438 * 11 10 9 13 13 C 1.46895 * 110.99789 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.47035 * 179.97438 * 13 12 11 15 15 H 1.09003 * 109.46791 * 305.00172 * 14 13 12 16 16 O 1.42901 * 109.46983 * 64.99805 * 14 13 12 17 17 C 1.52996 * 109.47522 * 184.99817 * 14 13 12 18 18 C 1.53774 * 113.61643 * 279.14226 * 17 14 13 19 19 C 1.53955 * 87.01980 * 220.04408 * 18 17 14 20 20 C 1.53774 * 113.61796 * 181.52680 * 17 14 13 21 21 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46980 * 60.00263 * 9 7 2 23 23 H 1.09004 * 109.47113 * 300.00244 * 9 7 2 24 24 H 1.09001 * 109.47372 * 60.00128 * 10 9 7 25 25 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 26 26 H 1.08992 * 109.47056 * 59.99654 * 11 10 9 27 27 H 1.09004 * 109.47006 * 299.99770 * 11 10 9 28 28 H 1.00899 * 110.99484 * 303.95475 * 12 11 10 29 29 H 1.08996 * 109.47424 * 299.99656 * 13 12 11 30 30 H 1.09002 * 109.47411 * 60.00282 * 13 12 11 31 31 H 0.96703 * 113.99992 * 60.00603 * 16 14 13 32 32 H 1.09005 * 112.84518 * 50.33466 * 17 14 13 33 33 H 1.09004 * 113.61288 * 334.56339 * 18 17 14 34 34 H 1.08998 * 113.62000 * 105.46617 * 18 17 14 35 35 H 1.09001 * 113.53768 * 270.80944 * 19 18 17 36 36 H 1.08998 * 113.74686 * 139.94179 * 19 18 17 37 37 H 1.08994 * 113.61717 * 254.53156 * 20 17 14 38 38 H 1.09000 * 113.61356 * 25.43505 * 20 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4799 -4.9871 -0.0012 12 7 2.4345 -6.1038 -0.0018 13 6 1.7341 -7.3950 -0.0018 14 6 2.7589 -8.5311 -0.0031 15 1 3.4393 -8.4057 -0.8454 16 8 3.5017 -8.5039 1.2174 17 6 2.0335 -9.8723 -0.1288 18 6 1.4559 -10.3872 1.2001 19 6 1.9178 -11.7898 0.7647 20 6 2.9758 -11.0872 -0.1024 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 -0.8903 23 1 0.6245 -2.5571 0.8897 24 1 2.8717 -3.6045 0.8895 25 1 2.8717 -3.6044 -0.8906 26 1 0.8536 -5.0445 -0.8913 27 1 0.8530 -5.0451 0.8886 28 1 3.0693 -6.0363 -0.7832 29 1 1.1096 -7.4697 0.8884 30 1 1.1088 -7.4693 -0.8916 31 1 2.9590 -8.6102 2.0106 32 1 1.3192 -9.8916 -0.9520 33 1 1.9781 -10.0088 2.0789 34 1 0.3731 -10.2864 1.2739 35 1 1.1709 -12.3341 0.1867 36 1 2.3412 -12.3836 1.5748 37 1 3.1182 -11.5507 -1.0785 38 1 3.9143 -10.9006 0.4196 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315687851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:56 Heat of formation + Delta-G solvation = -54.777645 kcal Electronic energy + Delta-G solvation = -15426.033855 eV Core-core repulsion = 12882.089311 eV Total energy + Delta-G solvation = -2543.944544 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.84714 -36.70735 -35.39093 -33.39647 -31.42206 -29.17835 -26.37896 -25.91347 -24.22673 -22.17107 -21.76384 -20.03425 -19.46326 -17.06376 -16.44027 -16.11625 -15.44536 -15.05207 -14.75362 -14.44068 -13.79637 -13.51033 -13.20941 -12.66514 -12.52695 -12.18622 -12.02342 -11.59063 -11.39185 -11.32116 -10.98666 -10.81669 -10.74990 -10.54394 -10.50766 -10.37436 -9.81071 -9.65655 -9.26577 -9.00764 -8.31605 -8.10003 -5.96847 -3.98692 3.34489 3.40381 3.44724 4.09529 4.30544 4.38325 4.48287 4.49523 4.59523 4.69279 5.04890 5.18875 5.26098 5.38966 5.43126 5.48066 5.53370 5.62463 5.66164 5.68824 5.81542 5.86996 5.96395 6.09177 6.24326 6.35156 6.75624 6.79839 7.17508 7.36345 7.59399 7.71563 7.73141 7.87127 8.03890 8.47507 9.08604 9.65137 11.14691 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.083119 B = 0.003505 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.785312 B = 7987.676467 C = 8139.930580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.683 5.683 13 C 0.028 3.972 14 C 0.119 3.881 15 H 0.096 0.904 16 O -0.547 6.547 17 C -0.145 4.145 18 C -0.141 4.141 19 C -0.141 4.141 20 C -0.132 4.132 21 H 0.260 0.740 22 H 0.013 0.987 23 H 0.016 0.984 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.022 0.978 27 H 0.065 0.935 28 H 0.337 0.663 29 H 0.072 0.928 30 H 0.032 0.968 31 H 0.369 0.631 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.676 -21.983 0.129 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.070 4.070 12 N -0.314 5.314 13 C -0.102 4.102 14 C 0.060 3.940 15 H 0.114 0.886 16 O -0.353 6.353 17 C -0.164 4.164 18 C -0.178 4.178 19 C -0.179 4.179 20 C -0.170 4.170 21 H 0.069 0.931 22 H 0.031 0.969 23 H 0.034 0.966 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.155 0.845 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.218 0.782 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.099 -21.770 0.413 21.993 hybrid contribution -0.582 0.871 -0.671 1.244 sum 2.517 -20.899 -0.257 21.051 Atomic orbital electron populations 1.69971 1.06076 1.26526 1.51131 1.25038 0.94857 0.99281 0.95406 0.86586 0.79892 0.83431 0.78057 1.20714 1.21247 1.19820 1.21275 0.93092 0.91066 1.50221 0.92640 1.19068 0.94023 0.91423 0.97056 1.21620 0.99156 0.92932 1.00774 1.22138 0.94115 0.90997 0.99700 1.60471 1.20050 1.00967 1.49915 1.22639 0.96075 0.90563 1.00913 1.21750 0.92883 0.91291 0.88125 0.88595 1.86606 1.37661 1.95771 1.15239 1.23282 0.98922 0.95239 0.98988 1.22957 1.00774 0.96661 0.97401 1.22801 0.98922 0.96271 0.99889 1.22897 0.98047 0.95859 1.00171 0.93063 0.96863 0.96609 0.92496 0.93681 0.95974 0.91638 0.84547 0.90977 0.94996 0.78249 0.88746 0.89780 0.91396 0.90453 0.91517 0.91815 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.29 55.43 0.74 -26.76 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.30 5.41 -26.73 -0.14 -2.44 16 11 C 0.06 1.06 5.69 -3.82 -0.02 1.04 16 12 N -0.68 -10.40 6.45 -113.78 -0.73 -11.14 16 13 C 0.03 0.34 5.30 -3.82 -0.02 0.32 16 14 C 0.12 1.25 3.21 -26.73 -0.09 1.16 16 15 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 16 O -0.55 -6.43 12.52 -35.23 -0.44 -6.87 16 17 C -0.15 -1.22 3.58 -89.82 -0.32 -1.54 16 18 C -0.14 -1.07 7.42 -25.83 -0.19 -1.26 16 19 C -0.14 -1.02 8.09 -25.83 -0.21 -1.23 16 20 C -0.13 -1.06 7.54 -25.92 -0.20 -1.26 16 21 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 22 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 25 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.34 4.90 8.73 -39.29 -0.34 4.55 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.37 3.46 6.82 45.56 0.31 3.77 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.61 5.92 -51.93 -0.31 0.30 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.79 7.72 -51.93 -0.40 0.39 16 LS Contribution 308.11 15.07 4.64 4.64 Total: -1.00 -31.23 308.11 -8.76 -39.99 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.20 Total: 1.75 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -1.74 Total: -18.67 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.00 Total: -37.90 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.44 Total: -6.87 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.23 -8.76 -39.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315687851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.787 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds