Wall clock time and date at job start Mon Mar 30 2020 03:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00118 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00179 * 3 2 1 6 6 H 1.48498 * 109.46997 * 149.99989 * 3 2 1 7 7 C 1.37885 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46891 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.47053 * 179.97438 * 11 10 9 13 13 C 1.46895 * 110.99789 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.47035 * 179.97438 * 13 12 11 15 15 H 1.09003 * 109.46791 * 305.00172 * 14 13 12 16 16 O 1.42901 * 109.46983 * 64.99805 * 14 13 12 17 17 C 1.52996 * 109.47522 * 184.99817 * 14 13 12 18 18 C 1.53774 * 113.61643 * 279.14226 * 17 14 13 19 19 C 1.53955 * 87.01980 * 220.04408 * 18 17 14 20 20 C 1.53774 * 113.61796 * 181.52680 * 17 14 13 21 21 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46980 * 60.00263 * 9 7 2 23 23 H 1.09004 * 109.47113 * 300.00244 * 9 7 2 24 24 H 1.09001 * 109.47372 * 60.00128 * 10 9 7 25 25 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 26 26 H 1.08992 * 109.47056 * 59.99654 * 11 10 9 27 27 H 1.09004 * 109.47006 * 299.99770 * 11 10 9 28 28 H 1.00899 * 110.99484 * 303.95475 * 12 11 10 29 29 H 1.08996 * 109.47424 * 299.99656 * 13 12 11 30 30 H 1.09002 * 109.47411 * 60.00282 * 13 12 11 31 31 H 0.96703 * 113.99992 * 60.00603 * 16 14 13 32 32 H 1.09005 * 112.84518 * 50.33466 * 17 14 13 33 33 H 1.09004 * 113.61288 * 334.56339 * 18 17 14 34 34 H 1.08998 * 113.62000 * 105.46617 * 18 17 14 35 35 H 1.09001 * 113.53768 * 270.80944 * 19 18 17 36 36 H 1.08998 * 113.74686 * 139.94179 * 19 18 17 37 37 H 1.08994 * 113.61717 * 254.53156 * 20 17 14 38 38 H 1.09000 * 113.61356 * 25.43505 * 20 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4799 -4.9871 -0.0012 12 7 2.4345 -6.1038 -0.0018 13 6 1.7341 -7.3950 -0.0018 14 6 2.7589 -8.5311 -0.0031 15 1 3.4393 -8.4057 -0.8454 16 8 3.5017 -8.5039 1.2174 17 6 2.0335 -9.8723 -0.1288 18 6 1.4559 -10.3872 1.2001 19 6 1.9178 -11.7898 0.7647 20 6 2.9758 -11.0872 -0.1024 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 -0.8903 23 1 0.6245 -2.5571 0.8897 24 1 2.8717 -3.6045 0.8895 25 1 2.8717 -3.6044 -0.8906 26 1 0.8536 -5.0445 -0.8913 27 1 0.8530 -5.0451 0.8886 28 1 3.0693 -6.0363 -0.7832 29 1 1.1096 -7.4697 0.8884 30 1 1.1088 -7.4693 -0.8916 31 1 2.9590 -8.6102 2.0106 32 1 1.3192 -9.8916 -0.9520 33 1 1.9781 -10.0088 2.0789 34 1 0.3731 -10.2864 1.2739 35 1 1.1709 -12.3341 0.1867 36 1 2.3412 -12.3836 1.5748 37 1 3.1182 -11.5507 -1.0785 38 1 3.9143 -10.9006 0.4196 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315687851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:55 Heat of formation + Delta-G solvation = -76.414818 kcal Electronic energy + Delta-G solvation = -15426.972113 eV Core-core repulsion = 12882.089311 eV Total energy + Delta-G solvation = -2544.882802 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.57532 -37.85719 -36.53264 -35.29707 -33.19272 -30.40635 -27.97629 -26.58417 -25.48839 -23.76451 -22.71930 -21.78085 -20.11119 -18.50195 -17.90055 -17.21155 -16.55507 -16.39369 -16.05186 -15.78754 -15.19577 -14.68989 -14.32637 -14.11371 -13.64345 -13.39370 -13.24533 -13.08366 -12.80737 -12.59984 -12.47874 -12.26098 -12.07033 -11.74186 -11.54487 -11.44059 -11.35911 -11.18934 -11.03298 -10.56225 -10.48223 -9.33100 -8.21103 -6.32263 1.39675 1.41355 1.52886 2.40686 3.09849 3.11892 3.59862 3.64404 3.79501 3.90040 3.97842 4.15202 4.24789 4.32443 4.41412 4.49228 4.67637 4.71299 4.82731 4.90475 4.92107 4.96765 5.02099 5.09165 5.10580 5.15123 5.23001 5.40202 5.50953 5.63188 5.73546 5.84654 6.04837 6.26477 6.45326 6.84479 6.90131 7.37005 8.90927 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.083119 B = 0.003505 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.785312 B = 7987.676467 C = 8139.930580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.093 4.093 11 C 0.073 3.927 12 N -0.688 5.688 13 C 0.030 3.970 14 C 0.125 3.875 15 H 0.093 0.907 16 O -0.563 6.563 17 C -0.142 4.142 18 C -0.142 4.142 19 C -0.137 4.137 20 C -0.132 4.132 21 H 0.264 0.736 22 H -0.009 1.009 23 H -0.009 1.009 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.022 0.978 27 H 0.060 0.940 28 H 0.342 0.658 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.378 0.622 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.397 -22.566 -0.002 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.131 4.131 11 C -0.057 4.057 12 N -0.319 5.319 13 C -0.100 4.100 14 C 0.066 3.934 15 H 0.111 0.889 16 O -0.371 6.371 17 C -0.161 4.161 18 C -0.179 4.179 19 C -0.174 4.174 20 C -0.170 4.170 21 H 0.073 0.927 22 H 0.010 0.990 23 H 0.010 0.990 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.079 0.921 28 H 0.160 0.840 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.228 0.772 32 H 0.119 0.881 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.826 -22.377 0.283 22.703 hybrid contribution -0.824 1.015 -0.624 1.449 sum 3.002 -21.362 -0.341 21.575 Atomic orbital electron populations 1.70099 1.07811 1.27817 1.51705 1.26010 0.95821 1.03451 0.94661 0.85419 0.78641 0.78266 0.78564 1.19640 1.20584 1.18808 1.21711 0.93545 0.92465 1.50564 0.92312 1.18970 0.94398 0.93095 0.94749 1.21378 0.98025 0.93060 1.00628 1.21833 0.93950 0.90344 0.99526 1.60404 1.19748 1.01415 1.50351 1.22715 0.96522 0.89407 1.01337 1.21701 0.92393 0.91670 0.87657 0.88950 1.86580 1.38594 1.95860 1.16042 1.23252 0.99057 0.94025 0.99779 1.22991 1.00987 0.96895 0.97025 1.22800 0.98681 0.96096 0.99873 1.22873 0.97726 0.95808 1.00586 0.92717 0.99030 0.99032 0.93104 0.93176 0.95931 0.92123 0.84010 0.90842 0.94174 0.77204 0.88080 0.89562 0.91075 0.89655 0.91098 0.91232 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 3 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.54 -32.03 9.11 25.60 0.23 -31.80 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.09 -4.01 5.41 30.59 0.17 -3.84 16 11 C 0.07 2.57 5.69 86.30 0.49 3.06 16 12 N -0.69 -20.18 6.45 -513.88 -3.31 -23.49 16 13 C 0.03 0.67 5.30 86.31 0.46 1.13 16 14 C 0.13 2.44 3.21 30.59 0.10 2.54 16 15 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 16 O -0.56 -12.55 12.52 -148.98 -1.86 -14.41 16 17 C -0.14 -2.14 3.58 -10.27 -0.04 -2.18 16 18 C -0.14 -1.90 7.42 31.18 0.23 -1.67 16 19 C -0.14 -1.70 8.09 31.18 0.25 -1.45 16 20 C -0.13 -1.91 7.54 31.12 0.23 -1.67 16 21 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 22 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 23 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 24 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 26 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 28 H 0.34 9.50 8.73 -89.69 -0.78 8.72 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.38 6.62 6.82 -74.06 -0.50 6.12 16 32 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.09 1.11 5.92 -2.38 -0.01 1.10 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 36 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 1.31 7.72 -2.39 -0.02 1.29 16 Total: -1.00 -66.00 308.11 -0.40 -66.39 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -0.27 Total: 15.94 kcal Atomic # 6 Polarization: -36.71 SS G_CDS: 2.74 Total: -33.98 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -3.03 Total: -81.07 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -1.86 Total: -14.41 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -66.00 -0.40 -66.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315687851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.021 kcal (2) G-P(sol) polarization free energy of solvation -65.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds