Wall clock time and date at job start Mon Mar 30 2020 03:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46997 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47501 * 180.02562 * 12 11 10 14 14 C 1.46895 * 111.00306 * 179.97438 * 13 12 11 15 15 H 1.08998 * 110.43187 * 36.08203 * 14 13 12 16 16 C 1.54891 * 110.48477 * 273.54553 * 14 13 12 17 17 C 1.54888 * 102.74547 * 203.37571 * 16 14 13 18 18 C 1.54266 * 104.19869 * 37.94483 * 17 16 14 19 19 C 1.53872 * 106.59409 * 336.38833 * 18 17 16 20 20 H 1.09004 * 110.03393 * 240.71319 * 19 18 17 21 21 O 1.42906 * 110.03381 * 119.28447 * 19 18 17 22 22 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 25 25 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 26 26 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 27 27 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 28 28 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 29 29 H 1.09000 * 109.46866 * 300.00212 * 12 11 10 30 30 H 1.08996 * 109.47261 * 59.99820 * 12 11 10 31 31 H 1.00907 * 110.99847 * 56.04182 * 13 12 11 32 32 H 1.08995 * 110.75994 * 321.69292 * 16 14 13 33 33 H 1.08996 * 110.75703 * 85.06729 * 16 14 13 34 34 H 1.09013 * 110.48648 * 156.62067 * 17 16 14 35 35 H 1.08994 * 110.49286 * 279.26042 * 17 16 14 36 36 H 1.09006 * 110.03099 * 95.66799 * 18 17 16 37 37 H 1.08992 * 110.03716 * 217.05289 * 18 17 16 38 38 H 0.96702 * 113.99717 * 62.83352 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 0.0001 12 6 2.4747 -6.1500 -0.0005 13 7 1.7403 -7.4222 -0.0005 14 6 2.6647 -8.5638 -0.0018 15 1 3.5462 -8.3403 0.5992 16 6 3.0745 -8.9279 -1.4504 17 6 3.4945 -10.4134 -1.3236 18 6 2.4857 -11.0074 -0.3190 19 6 1.9582 -9.8314 0.5215 20 1 2.1994 -9.9861 1.5731 21 8 0.5442 -9.7070 0.3562 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5568 -0.8902 24 1 0.6248 -2.5571 0.8897 25 1 2.8721 -3.6043 -0.8905 26 1 2.8721 -3.6042 0.8895 27 1 0.8541 -5.0446 0.8903 28 1 0.8535 -5.0451 -0.8897 29 1 3.1007 -6.0923 -0.8910 30 1 3.1020 -6.0922 0.8889 31 1 1.1035 -7.4721 -0.7817 32 1 2.2284 -8.8223 -2.1294 33 1 3.9141 -8.3159 -1.7798 34 1 3.4140 -10.9162 -2.2875 35 1 4.5101 -10.4910 -0.9355 36 1 1.6632 -11.4833 -0.8529 37 1 2.9828 -11.7335 0.3242 38 1 0.0430 -10.4735 0.6670 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323177830.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:02 Heat of formation + Delta-G solvation = -81.404867 kcal Electronic energy + Delta-G solvation = -15521.109626 eV Core-core repulsion = 12976.010439 eV Total energy + Delta-G solvation = -2545.099187 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.26750 -36.06810 -34.85457 -33.53537 -31.84751 -28.74206 -27.89211 -26.29427 -23.90034 -21.36783 -21.00526 -20.40951 -19.73293 -17.41953 -16.29250 -15.95329 -15.26541 -15.00589 -14.55434 -14.36185 -13.92822 -13.42079 -12.95545 -12.63367 -12.42140 -12.09024 -11.66671 -11.54580 -11.42073 -11.26591 -11.02306 -10.91360 -10.73198 -10.45513 -10.43408 -10.34737 -9.98386 -9.55645 -9.19084 -8.94962 -8.27828 -8.12108 -5.92928 -3.95150 3.37271 3.41269 3.43937 4.01652 4.23798 4.37535 4.50884 4.59246 4.81768 5.08132 5.15745 5.23186 5.37911 5.42145 5.47575 5.57557 5.62242 5.67118 5.72380 5.77649 5.97493 6.01879 6.03937 6.25520 6.36200 6.60315 6.91521 7.05243 7.14929 7.31575 7.59819 7.69094 7.76547 7.93589 8.08774 8.51373 9.12308 9.68288 11.18448 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.066542 B = 0.003710 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.684150 B = 7545.910933 C = 7800.299338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.115 4.115 12 C 0.058 3.942 13 N -0.669 5.669 14 C 0.091 3.909 15 H 0.089 0.911 16 C -0.156 4.156 17 C -0.119 4.119 18 C -0.160 4.160 19 C 0.109 3.891 20 H 0.056 0.944 21 O -0.546 6.546 22 H 0.260 0.740 23 H 0.014 0.986 24 H 0.016 0.984 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.024 0.976 30 H 0.066 0.934 31 H 0.346 0.654 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.393 -22.407 -0.915 23.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.071 4.071 13 N -0.299 5.299 14 C -0.020 4.020 15 H 0.107 0.893 16 C -0.196 4.196 17 C -0.157 4.157 18 C -0.198 4.198 19 C 0.049 3.951 20 H 0.074 0.926 21 O -0.350 6.350 22 H 0.070 0.930 23 H 0.033 0.967 24 H 0.034 0.966 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.166 0.834 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 5.316 -21.692 -0.469 22.339 hybrid contribution 0.705 0.358 -0.714 1.065 sum 6.021 -21.334 -1.183 22.198 Atomic orbital electron populations 1.69963 1.06037 1.26592 1.51000 1.25038 0.94849 0.99201 0.95470 0.86667 0.79574 0.83236 0.78558 1.20304 1.21316 1.20278 1.21266 0.92970 0.91269 1.50361 0.92848 1.19091 0.94046 0.91315 0.97170 1.21590 0.99060 0.94058 0.99970 1.21623 0.97881 0.93766 1.02006 1.22126 0.96247 0.88971 0.99756 1.60321 1.18408 1.00488 1.50680 1.22480 0.94411 0.90337 0.94806 0.89286 1.23270 1.01554 0.96375 0.98362 1.22205 0.98682 0.95776 0.99069 1.22979 0.99860 0.98361 0.98613 1.22440 0.81677 0.93729 0.97222 0.92642 1.86643 1.16992 1.44880 1.86470 0.93014 0.96726 0.96598 0.93752 0.93517 0.91662 0.92806 0.95812 0.91553 0.83438 0.91010 0.91436 0.91674 0.91548 0.90894 0.91528 0.78542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.29 55.43 0.74 -27.05 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -15.30 9.11 -34.44 -0.31 -15.61 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.34 5.15 -26.73 -0.14 -2.48 16 11 C -0.11 -2.09 5.47 -26.73 -0.15 -2.24 16 12 C 0.06 0.87 5.53 -3.82 -0.02 0.85 16 13 N -0.67 -9.32 5.61 -104.98 -0.59 -9.91 16 14 C 0.09 1.03 3.10 -66.06 -0.20 0.82 16 15 H 0.09 0.98 7.87 -51.93 -0.41 0.57 16 16 C -0.16 -1.56 6.41 -24.74 -0.16 -1.72 16 17 C -0.12 -0.96 6.83 -25.07 -0.17 -1.13 16 18 C -0.16 -1.23 6.61 -25.61 -0.17 -1.40 16 19 C 0.11 1.07 4.20 -25.62 -0.11 0.96 16 20 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 21 O -0.55 -5.90 12.32 -35.23 -0.43 -6.34 16 22 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 30 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 31 H 0.35 4.91 8.12 -39.29 -0.32 4.59 16 32 H 0.07 0.77 7.82 -51.93 -0.41 0.36 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.54 7.96 -51.93 -0.41 0.13 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.37 2.41 9.11 45.56 0.42 2.83 16 LS Contribution 307.63 15.07 4.64 4.64 Total: -1.00 -32.02 307.63 -8.50 -40.52 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.17 Total: 0.94 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -1.67 Total: -19.98 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.15 Total: -36.96 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.43 Total: -6.34 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.02 -8.50 -40.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323177830.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.885 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds