Wall clock time and date at job start Mon Mar 30 2020 03:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46997 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47501 * 180.02562 * 12 11 10 14 14 C 1.46895 * 111.00306 * 179.97438 * 13 12 11 15 15 H 1.08998 * 110.43187 * 36.08203 * 14 13 12 16 16 C 1.54891 * 110.48477 * 273.54553 * 14 13 12 17 17 C 1.54888 * 102.74547 * 203.37571 * 16 14 13 18 18 C 1.54266 * 104.19869 * 37.94483 * 17 16 14 19 19 C 1.53872 * 106.59409 * 336.38833 * 18 17 16 20 20 H 1.09004 * 110.03393 * 240.71319 * 19 18 17 21 21 O 1.42906 * 110.03381 * 119.28447 * 19 18 17 22 22 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 25 25 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 26 26 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 27 27 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 28 28 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 29 29 H 1.09000 * 109.46866 * 300.00212 * 12 11 10 30 30 H 1.08996 * 109.47261 * 59.99820 * 12 11 10 31 31 H 1.00907 * 110.99847 * 56.04182 * 13 12 11 32 32 H 1.08995 * 110.75994 * 321.69292 * 16 14 13 33 33 H 1.08996 * 110.75703 * 85.06729 * 16 14 13 34 34 H 1.09013 * 110.48648 * 156.62067 * 17 16 14 35 35 H 1.08994 * 110.49286 * 279.26042 * 17 16 14 36 36 H 1.09006 * 110.03099 * 95.66799 * 18 17 16 37 37 H 1.08992 * 110.03716 * 217.05289 * 18 17 16 38 38 H 0.96702 * 113.99717 * 62.83352 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 0.0001 12 6 2.4747 -6.1500 -0.0005 13 7 1.7403 -7.4222 -0.0005 14 6 2.6647 -8.5638 -0.0018 15 1 3.5462 -8.3403 0.5992 16 6 3.0745 -8.9279 -1.4504 17 6 3.4945 -10.4134 -1.3236 18 6 2.4857 -11.0074 -0.3190 19 6 1.9582 -9.8314 0.5215 20 1 2.1994 -9.9861 1.5731 21 8 0.5442 -9.7070 0.3562 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5568 -0.8902 24 1 0.6248 -2.5571 0.8897 25 1 2.8721 -3.6043 -0.8905 26 1 2.8721 -3.6042 0.8895 27 1 0.8541 -5.0446 0.8903 28 1 0.8535 -5.0451 -0.8897 29 1 3.1007 -6.0923 -0.8910 30 1 3.1020 -6.0922 0.8889 31 1 1.1035 -7.4721 -0.7817 32 1 2.2284 -8.8223 -2.1294 33 1 3.9141 -8.3159 -1.7798 34 1 3.4140 -10.9162 -2.2875 35 1 4.5101 -10.4910 -0.9355 36 1 1.6632 -11.4833 -0.8529 37 1 2.9828 -11.7335 0.3242 38 1 0.0430 -10.4735 0.6670 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323177830.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:01 Heat of formation + Delta-G solvation = -103.925007 kcal Electronic energy + Delta-G solvation = -15522.086172 eV Core-core repulsion = 12976.010439 eV Total energy + Delta-G solvation = -2546.075733 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.06968 -37.36607 -35.98480 -35.12326 -33.61605 -30.31776 -28.62719 -27.64625 -25.60627 -22.92689 -21.92795 -21.66544 -20.89229 -18.43463 -18.20007 -17.02693 -16.52864 -16.41658 -15.87253 -15.55664 -14.92680 -14.57817 -14.43178 -14.04509 -13.67117 -13.51815 -13.12959 -13.00916 -12.75842 -12.42647 -12.28849 -12.10824 -12.07840 -12.01055 -11.80896 -11.44221 -11.37089 -11.30003 -10.93490 -10.70233 -10.54996 -9.17438 -8.19510 -6.31608 1.39429 1.43403 1.51378 2.41262 3.10509 3.12806 3.51636 3.66466 3.79401 4.06497 4.13947 4.24494 4.40128 4.41082 4.52982 4.56313 4.66693 4.67106 4.82638 4.87522 4.91808 4.98971 5.07713 5.13598 5.20728 5.24766 5.29654 5.35635 5.40609 5.54724 5.77473 5.86530 6.17532 6.25673 6.50770 6.85768 7.07878 7.37681 8.92386 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.066542 B = 0.003710 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.684150 B = 7545.910933 C = 7800.299338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.022 3.978 10 C -0.096 4.096 11 C -0.105 4.105 12 C 0.070 3.930 13 N -0.678 5.678 14 C 0.082 3.918 15 H 0.092 0.908 16 C -0.154 4.154 17 C -0.116 4.116 18 C -0.152 4.152 19 C 0.108 3.892 20 H 0.060 0.940 21 O -0.570 6.570 22 H 0.264 0.736 23 H -0.011 1.011 24 H -0.012 1.012 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.343 0.657 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.039 -23.214 -0.958 24.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.079 0.921 9 C -0.015 4.015 10 C -0.134 4.134 11 C -0.143 4.143 12 C -0.059 4.059 13 N -0.308 5.308 14 C -0.029 4.029 15 H 0.110 0.890 16 C -0.193 4.193 17 C -0.154 4.154 18 C -0.190 4.190 19 C 0.048 3.952 20 H 0.078 0.922 21 O -0.376 6.376 22 H 0.073 0.927 23 H 0.007 0.993 24 H 0.006 0.994 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.162 0.838 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 6.969 -22.534 -0.507 23.592 hybrid contribution 0.133 0.580 -0.691 0.912 sum 7.102 -21.954 -1.198 23.105 Atomic orbital electron populations 1.70109 1.07923 1.27876 1.51655 1.26058 0.95824 1.03590 0.94672 0.85451 0.78233 0.77801 0.79263 1.19036 1.20754 1.19058 1.21723 0.93602 0.92493 1.50640 0.92088 1.19025 0.94528 0.93381 0.94544 1.21396 0.97954 0.93578 1.00470 1.21454 0.98074 0.93570 1.01189 1.21896 0.95221 0.88455 1.00281 1.60290 1.19057 1.00733 1.50722 1.22653 0.94304 0.89984 0.95928 0.88985 1.23206 1.01054 0.97946 0.97135 1.22219 0.99306 0.94203 0.99708 1.22911 0.99885 0.97732 0.98429 1.22480 0.81283 0.93623 0.97824 0.92217 1.86590 1.17755 1.46460 1.86815 0.92746 0.99309 0.99356 0.93059 0.92995 0.92931 0.93227 0.95073 0.91156 0.83814 0.92094 0.91582 0.90918 0.90502 0.90594 0.89760 0.76583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.97 13.29 21.45 0.28 -58.68 16 2 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 3 Si 0.97 45.36 29.54 68.60 2.03 47.38 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -32.44 9.11 25.60 0.23 -32.21 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.10 -4.15 5.15 30.60 0.16 -3.99 16 11 C -0.10 -3.85 5.47 30.60 0.17 -3.68 16 12 C 0.07 2.07 5.53 86.31 0.48 2.55 16 13 N -0.68 -18.43 5.61 -486.05 -2.73 -21.16 16 14 C 0.08 1.74 3.10 45.99 0.14 1.88 16 15 H 0.09 1.88 7.87 -2.39 -0.02 1.86 16 16 C -0.15 -2.86 6.41 31.89 0.20 -2.65 16 17 C -0.12 -1.59 6.83 31.67 0.22 -1.38 16 18 C -0.15 -1.95 6.61 31.32 0.21 -1.74 16 19 C 0.11 1.92 4.20 31.32 0.13 2.06 16 20 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 21 O -0.57 -11.66 12.32 -148.98 -1.84 -13.50 16 22 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 23 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 24 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 25 H 0.05 2.13 8.14 -2.39 -0.02 2.12 16 26 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.03 0.87 8.12 -2.39 -0.02 0.85 16 30 H 0.07 2.02 8.08 -2.39 -0.02 2.00 16 31 H 0.34 9.64 8.12 -89.69 -0.73 8.91 16 32 H 0.06 1.26 7.82 -2.39 -0.02 1.24 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 0.95 7.96 -2.38 -0.02 0.93 16 37 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.39 4.55 9.11 -74.06 -0.67 3.87 16 Total: -1.00 -68.62 307.63 -0.09 -68.71 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -0.38 Total: 14.78 kcal Atomic # 6 Polarization: -40.09 SS G_CDS: 2.55 Total: -37.55 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -2.44 Total: -79.84 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -1.84 Total: -13.50 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -68.62 -0.09 -68.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323177830.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.212 kcal (2) G-P(sol) polarization free energy of solvation -68.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds