Wall clock time and date at job start Mon Mar 30 2020 03:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46898 * 109.47049 * 2 1 4 4 C 1.47480 * 111.00405 * 265.97434 * 3 2 1 5 5 C 1.53515 * 87.93275 * 221.29694 * 4 3 2 6 6 N 1.46905 * 114.17241 * 139.66772 * 5 4 3 7 7 C 1.46897 * 110.99773 * 111.15700 * 6 5 4 8 8 C 1.50703 * 109.46634 * 180.02562 * 7 6 5 9 9 O 1.21289 * 120.00503 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99739 * 180.02562 * 8 7 6 11 11 C 1.37104 * 120.00237 * 180.02562 * 10 8 7 12 12 H 1.08000 * 119.99816 * 359.97438 * 11 10 8 13 13 C 1.38951 * 119.99864 * 179.97438 * 11 10 8 14 14 N 1.31409 * 120.00481 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99426 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47148 * 90.00391 * 15 13 11 17 17 H 1.48498 * 109.47314 * 209.99760 * 15 13 11 18 18 H 1.48494 * 109.47556 * 330.00239 * 15 13 11 19 19 C 1.47486 * 110.99952 * 170.00069 * 3 2 1 20 20 H 1.09005 * 109.47224 * 59.99614 * 1 2 3 21 21 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47065 * 299.99843 * 1 2 3 23 23 H 1.09001 * 109.47065 * 240.00156 * 2 1 3 24 24 H 1.09005 * 109.47224 * 120.00386 * 2 1 3 25 25 H 1.09005 * 113.47310 * 336.06042 * 4 3 2 26 26 H 1.08990 * 113.48150 * 106.52863 * 4 3 2 27 27 H 1.08994 * 114.17159 * 272.37520 * 5 4 3 28 28 H 1.00896 * 110.99579 * 235.11674 * 6 5 4 29 29 H 1.08994 * 109.47274 * 300.00304 * 7 6 5 30 30 H 1.08995 * 109.46769 * 60.00606 * 7 6 5 31 31 H 0.97005 * 120.00283 * 0.02562 * 10 8 7 32 32 H 0.96998 * 119.99868 * 179.97438 * 14 13 11 33 33 H 1.09005 * 113.47586 * 253.47470 * 19 3 2 34 34 H 1.08996 * 113.47223 * 23.93957 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.2870 1.8511 -1.3734 5 6 3.5605 2.5211 -0.8386 6 7 4.7238 2.3976 -1.7272 7 6 5.0858 3.6989 -2.3046 8 6 6.2799 3.5326 -3.2087 9 8 6.7799 2.4377 -3.3578 10 7 6.7923 4.6006 -3.8516 11 6 7.8784 4.4492 -4.6746 12 1 8.3236 3.4743 -4.8073 13 6 8.4062 5.5503 -5.3378 14 7 7.8649 6.7367 -5.1758 15 14 9.8864 5.3441 -6.4584 16 1 9.4250 5.0466 -7.8383 17 1 10.6827 6.5975 -6.4624 18 1 10.7282 4.2244 -5.9658 19 6 3.4743 1.4313 0.2391 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 2.4846 1.0415 -2.0760 26 1 1.5462 2.5598 -1.7434 27 1 3.4085 3.5330 -0.4633 28 1 5.5072 1.9866 -1.2421 29 1 4.2457 4.0872 -2.8804 30 1 5.3305 4.3963 -1.5035 31 1 6.3927 5.4764 -3.7321 32 1 8.2337 7.5053 -5.6385 33 1 3.7395 1.7842 1.2357 34 1 3.9886 0.5097 -0.0332 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382233750.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:34 Heat of formation + Delta-G solvation = -25.220055 kcal Electronic energy + Delta-G solvation = -15335.523979 eV Core-core repulsion = 12689.320805 eV Total energy + Delta-G solvation = -2646.203174 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.17964 -40.01644 -36.26985 -35.57602 -33.31139 -32.89625 -28.86672 -27.11876 -26.79526 -25.28965 -22.42874 -21.25234 -20.70038 -19.89614 -17.88784 -16.98690 -16.93399 -16.64035 -16.39399 -15.88956 -15.71804 -15.17423 -14.25483 -14.24118 -14.00041 -13.59181 -13.46169 -13.33604 -13.09633 -12.82472 -12.53290 -12.41942 -12.11994 -11.91314 -11.75157 -11.50989 -11.42238 -10.35460 -10.02110 -9.95598 -9.38892 -8.46894 -5.95877 1.38313 1.42193 1.54983 2.04597 2.29002 2.78426 3.15236 3.20474 3.42207 3.58590 3.98521 4.05879 4.20876 4.28675 4.38525 4.48049 4.52766 4.57995 4.64631 4.69168 4.84236 4.90087 4.94916 5.05319 5.28114 5.40780 5.42302 5.89640 6.07020 6.10292 6.34975 6.59616 7.12109 7.55703 8.10797 8.70517 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.081305 B = 0.004152 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.300432 B = 6741.666436 C = 6842.077917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.012 3.988 3 N -0.478 5.478 4 C 0.009 3.991 5 C 0.053 3.947 6 N -0.668 5.668 7 C 0.065 3.935 8 C 0.437 3.563 9 O -0.624 6.624 10 N -0.572 5.572 11 C -0.336 4.336 12 H 0.079 0.921 13 C -0.013 4.013 14 N -0.920 5.920 15 Si 0.993 3.007 16 H -0.271 1.271 17 H -0.270 1.270 18 H -0.272 1.272 19 C 0.000 4.000 20 H 0.048 0.952 21 H 0.070 0.930 22 H 0.059 0.941 23 H 0.042 0.958 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.348 0.652 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.397 0.603 32 H 0.278 0.722 33 H 0.096 0.904 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.400 -6.332 9.976 16.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.117 4.117 3 N -0.201 5.201 4 C -0.121 4.121 5 C -0.057 4.057 6 N -0.301 5.301 7 C -0.067 4.067 8 C 0.225 3.775 9 O -0.511 6.511 10 N -0.210 5.210 11 C -0.465 4.465 12 H 0.097 0.903 13 C -0.212 4.212 14 N -0.561 5.561 15 Si 0.817 3.183 16 H -0.197 1.197 17 H -0.195 1.195 18 H -0.197 1.197 19 C -0.129 4.129 20 H 0.067 0.933 21 H 0.089 0.911 22 H 0.078 0.922 23 H 0.061 0.939 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.168 0.832 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.231 0.769 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.882 -6.734 9.710 16.757 hybrid contribution 1.447 0.350 -0.426 1.548 sum -10.435 -6.384 9.284 15.357 Atomic orbital electron populations 1.21628 0.93730 1.02103 1.02066 1.22716 0.97766 0.89721 1.01491 1.68877 1.13757 1.20469 1.17038 1.24047 0.96616 0.99918 0.91482 1.23233 0.90945 0.99095 0.92414 1.60186 1.09504 1.22598 1.37841 1.21599 0.95724 0.91994 0.97380 1.20881 0.87471 0.84330 0.84853 1.90486 1.64915 1.27149 1.68550 1.41936 1.28389 1.09665 1.40964 1.19680 1.07766 0.95992 1.23069 0.90315 1.26047 1.01752 0.94120 0.99317 1.69670 1.42699 0.99735 1.43994 0.84922 0.77382 0.77919 0.78082 1.19671 1.19493 1.19713 1.24085 0.90222 0.98538 1.00104 0.93313 0.91069 0.92168 0.93926 0.90281 0.91409 0.89660 0.88608 0.83202 0.87926 0.91171 0.76926 0.91258 0.88539 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 10.24 71.98 0.74 -1.47 16 2 C 0.01 0.22 5.54 86.30 0.48 0.70 16 3 N -0.48 -10.30 6.33 -927.82 -5.88 -16.17 16 4 C 0.01 0.21 7.52 83.58 0.63 0.84 16 5 C 0.05 1.29 4.48 45.37 0.20 1.49 16 6 N -0.67 -20.93 6.21 -494.66 -3.07 -24.01 16 7 C 0.07 2.23 6.01 85.56 0.51 2.75 16 8 C 0.44 20.86 7.82 87.66 0.69 21.54 16 9 O -0.62 -34.74 15.78 -3.06 -0.05 -34.79 16 10 N -0.57 -29.49 5.29 -306.98 -1.62 -31.11 16 11 C -0.34 -19.16 9.68 84.04 0.81 -18.34 16 12 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 13 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 14 N -0.92 -49.73 13.05 21.66 0.28 -49.45 16 15 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 16 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 17 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 C 0.00 0.00 7.28 83.58 0.61 0.61 16 20 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 21 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.04 0.84 7.30 -2.39 -0.02 0.82 16 24 H 0.08 1.32 8.08 -2.38 -0.02 1.30 16 25 H 0.07 1.75 7.42 -2.38 -0.02 1.74 16 26 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.10 2.15 7.88 -2.39 -0.02 2.13 16 28 H 0.35 11.29 8.27 -89.70 -0.74 10.55 16 29 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 30 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.40 19.36 7.90 -92.70 -0.73 18.63 16 32 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 33 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.07 1.60 7.91 -2.39 -0.02 1.59 16 Total: -1.00 -64.85 288.82 -3.55 -68.39 By element: Atomic # 1 Polarization: 34.61 SS G_CDS: -0.37 Total: 34.24 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 5.14 Total: 7.91 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -10.29 Total: -120.73 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -0.05 Total: -34.79 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -64.85 -3.55 -68.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382233750.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.172 kcal (2) G-P(sol) polarization free energy of solvation -64.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds