Wall clock time and date at job start Mon Mar 30 2020 03:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99937 * 2 1 4 4 H 1.48498 * 109.47502 * 240.00148 * 3 2 1 5 5 H 1.48495 * 109.46999 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47106 * 120.00426 * 3 2 1 7 7 C 1.37879 * 120.00682 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00604 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99525 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47267 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46937 * 180.02562 * 10 9 7 12 12 C 1.53009 * 109.46765 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.46705 * 180.02562 * 12 11 10 14 14 C 1.46901 * 110.99875 * 180.02562 * 13 12 11 15 15 C 1.53175 * 109.54266 * 274.55734 * 14 13 12 16 16 C 1.53094 * 109.16661 * 183.15200 * 15 14 13 17 17 O 1.42898 * 109.41211 * 57.60371 * 16 15 14 18 18 C 1.42897 * 114.10001 * 298.84343 * 17 16 15 19 19 C 1.53089 * 109.41656 * 61.16248 * 18 17 16 20 20 H 0.96996 * 120.00084 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47096 * 59.99996 * 9 7 2 22 22 H 1.08995 * 109.47226 * 300.00489 * 9 7 2 23 23 H 1.08996 * 109.46671 * 60.00153 * 10 9 7 24 24 H 1.08993 * 109.47055 * 300.00117 * 10 9 7 25 25 H 1.08996 * 109.47345 * 60.00529 * 11 10 9 26 26 H 1.09000 * 109.46964 * 299.99864 * 11 10 9 27 27 H 1.08996 * 109.46865 * 60.00102 * 12 11 10 28 28 H 1.08993 * 109.47033 * 299.99961 * 12 11 10 29 29 H 1.00895 * 111.00578 * 56.04851 * 13 12 11 30 30 H 1.09004 * 109.61472 * 34.77220 * 14 13 12 31 31 H 1.09004 * 109.52259 * 303.05466 * 15 14 13 32 32 H 1.09006 * 109.52330 * 63.24299 * 15 14 13 33 33 H 1.09006 * 109.47665 * 297.62062 * 16 15 14 34 34 H 1.08993 * 109.47955 * 177.58818 * 16 15 14 35 35 H 1.09002 * 109.48425 * 301.17758 * 18 17 16 36 36 H 1.09001 * 109.49443 * 181.15303 * 18 17 16 37 37 H 1.08997 * 109.52675 * 182.48845 * 19 18 17 38 38 H 1.08995 * 109.52428 * 62.29514 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4804 -4.9871 -0.0025 12 6 2.4748 -6.1500 -0.0031 13 7 1.7402 -7.4222 -0.0044 14 6 2.6647 -8.5638 -0.0044 15 6 3.0773 -8.8890 -1.4432 16 6 3.9772 -10.1275 -1.4404 17 8 3.2820 -11.2183 -0.8331 18 6 2.9129 -10.9895 0.5283 19 6 1.9701 -9.7857 0.6045 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8896 23 1 2.8727 -3.6047 0.8877 24 1 2.8714 -3.6039 -0.8922 25 1 0.8534 -5.0442 -0.8922 26 1 0.8542 -5.0454 0.8878 27 1 3.1014 -6.0927 0.8869 28 1 3.1013 -6.0918 -0.8930 29 1 1.1041 -7.4717 -0.7859 30 1 3.5500 -8.3177 0.5819 31 1 2.1877 -9.0866 -2.0414 32 1 3.6214 -8.0443 -1.8659 33 1 4.8853 -9.9156 -0.8758 34 1 4.2390 -10.3889 -2.4656 35 1 3.8069 -10.7890 1.1186 36 1 2.4081 -11.8720 0.9215 37 1 1.7225 -9.5824 1.6463 38 1 1.0582 -10.0014 0.0478 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385179692.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:03 Heat of formation + Delta-G solvation = -79.799224 kcal Electronic energy + Delta-G solvation = -15469.436697 eV Core-core repulsion = 12924.407136 eV Total energy + Delta-G solvation = -2545.029561 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.68820 -36.75452 -34.52076 -32.65524 -31.35863 -30.91375 -27.89286 -24.85260 -23.75895 -23.25880 -21.46388 -20.54236 -19.88255 -16.67845 -16.25543 -16.15286 -15.61044 -15.06393 -14.90076 -14.44856 -14.14296 -14.10275 -13.26891 -12.83668 -12.46192 -12.38843 -11.67252 -11.60598 -11.55611 -11.44266 -11.17572 -10.95507 -10.64696 -10.53119 -10.45525 -10.39521 -9.87215 -9.62471 -9.24437 -8.99928 -8.37620 -8.31536 -5.96975 -3.99403 3.34466 3.38701 3.41208 3.61615 4.07879 4.48122 4.51356 4.62404 4.74089 4.95783 4.97257 5.20029 5.29072 5.36041 5.38453 5.42352 5.47094 5.52193 5.64208 5.77678 5.88402 5.93865 5.98912 6.16817 6.26409 6.51211 6.82703 6.92931 6.96446 7.04154 7.23129 7.39488 7.71494 7.87631 8.04002 8.46687 9.07934 9.64348 11.14364 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.074942 B = 0.003511 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.534307 B = 7973.461922 C = 8140.343790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.059 3.941 13 N -0.685 5.685 14 C 0.085 3.915 15 C -0.187 4.187 16 C 0.065 3.935 17 O -0.385 6.385 18 C 0.060 3.940 19 C -0.143 4.143 20 H 0.261 0.739 21 H 0.014 0.986 22 H 0.016 0.984 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.026 0.974 29 H 0.341 0.659 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.165 -20.353 -0.842 21.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.069 4.069 13 N -0.314 5.314 14 C -0.025 4.025 15 C -0.227 4.227 16 C -0.012 4.012 17 O -0.304 6.304 18 C -0.017 4.017 19 C -0.182 4.182 20 H 0.070 0.930 21 H 0.033 0.967 22 H 0.034 0.966 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.044 0.956 29 H 0.159 0.841 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.873 -20.387 -0.244 21.218 hybrid contribution 0.812 1.357 -0.824 1.783 sum 6.685 -19.031 -1.067 20.199 Atomic orbital electron populations 1.69955 1.06052 1.26649 1.50912 1.25034 0.94849 0.99227 0.95405 0.86666 0.79588 0.83201 0.78584 1.20283 1.21286 1.20255 1.21257 0.92976 0.91245 1.50502 0.92832 1.19088 0.94022 0.91324 0.97157 1.21588 0.99088 0.93986 1.00037 1.21642 0.97885 0.93850 1.01999 1.22108 0.96279 0.88558 1.00003 1.60601 1.19365 1.01485 1.49995 1.21606 0.95352 0.91251 0.94323 1.22968 1.01482 0.99018 0.99193 1.22505 0.93674 0.86537 0.98503 1.87918 1.76548 1.39711 1.26245 1.22623 0.97578 0.98438 0.83065 1.22190 0.99400 0.94022 1.02560 0.92976 0.96746 0.96598 0.93461 0.93715 0.92756 0.91648 0.91350 0.95573 0.84100 0.90540 0.90815 0.90839 0.93193 0.88992 0.93248 0.88773 0.90154 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 11 C -0.12 -1.99 5.48 -26.73 -0.15 -2.14 16 12 C 0.06 0.83 5.49 -3.82 -0.02 0.81 16 13 N -0.69 -8.51 6.26 -106.53 -0.67 -9.17 16 14 C 0.09 0.89 2.55 -67.53 -0.17 0.72 16 15 C -0.19 -1.78 5.39 -26.59 -0.14 -1.93 16 16 C 0.07 0.58 6.84 37.21 0.25 0.83 16 17 O -0.39 -4.04 10.76 -35.23 -0.38 -4.42 16 18 C 0.06 0.52 6.84 37.20 0.25 0.77 16 19 C -0.14 -1.36 5.75 -26.59 -0.15 -1.51 16 20 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 21 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 28 H 0.03 0.36 7.54 -51.93 -0.39 -0.03 16 29 H 0.34 4.06 8.44 -39.29 -0.33 3.73 16 30 H 0.08 0.82 7.80 -51.93 -0.41 0.42 16 31 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 32 H 0.07 0.71 7.58 -51.93 -0.39 0.31 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 305.45 15.07 4.60 4.60 Total: -1.00 -30.74 305.45 -8.52 -39.26 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.97 Total: -2.17 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -0.81 Total: -18.31 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.07 Total: -35.88 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: -0.38 Total: -4.42 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.74 -8.52 -39.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385179692.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.541 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds