Wall clock time and date at job start Mon Mar 30 2020 03:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99937 * 2 1 4 4 H 1.48498 * 109.47502 * 240.00148 * 3 2 1 5 5 H 1.48495 * 109.46999 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47106 * 120.00426 * 3 2 1 7 7 C 1.37879 * 120.00682 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00604 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99525 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47267 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46937 * 180.02562 * 10 9 7 12 12 C 1.53009 * 109.46765 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.46705 * 180.02562 * 12 11 10 14 14 C 1.46901 * 110.99875 * 180.02562 * 13 12 11 15 15 C 1.53175 * 109.54266 * 274.55734 * 14 13 12 16 16 C 1.53094 * 109.16661 * 183.15200 * 15 14 13 17 17 O 1.42898 * 109.41211 * 57.60371 * 16 15 14 18 18 C 1.42897 * 114.10001 * 298.84343 * 17 16 15 19 19 C 1.53089 * 109.41656 * 61.16248 * 18 17 16 20 20 H 0.96996 * 120.00084 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47096 * 59.99996 * 9 7 2 22 22 H 1.08995 * 109.47226 * 300.00489 * 9 7 2 23 23 H 1.08996 * 109.46671 * 60.00153 * 10 9 7 24 24 H 1.08993 * 109.47055 * 300.00117 * 10 9 7 25 25 H 1.08996 * 109.47345 * 60.00529 * 11 10 9 26 26 H 1.09000 * 109.46964 * 299.99864 * 11 10 9 27 27 H 1.08996 * 109.46865 * 60.00102 * 12 11 10 28 28 H 1.08993 * 109.47033 * 299.99961 * 12 11 10 29 29 H 1.00895 * 111.00578 * 56.04851 * 13 12 11 30 30 H 1.09004 * 109.61472 * 34.77220 * 14 13 12 31 31 H 1.09004 * 109.52259 * 303.05466 * 15 14 13 32 32 H 1.09006 * 109.52330 * 63.24299 * 15 14 13 33 33 H 1.09006 * 109.47665 * 297.62062 * 16 15 14 34 34 H 1.08993 * 109.47955 * 177.58818 * 16 15 14 35 35 H 1.09002 * 109.48425 * 301.17758 * 18 17 16 36 36 H 1.09001 * 109.49443 * 181.15303 * 18 17 16 37 37 H 1.08997 * 109.52675 * 182.48845 * 19 18 17 38 38 H 1.08995 * 109.52428 * 62.29514 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4804 -4.9871 -0.0025 12 6 2.4748 -6.1500 -0.0031 13 7 1.7402 -7.4222 -0.0044 14 6 2.6647 -8.5638 -0.0044 15 6 3.0773 -8.8890 -1.4432 16 6 3.9772 -10.1275 -1.4404 17 8 3.2820 -11.2183 -0.8331 18 6 2.9129 -10.9895 0.5283 19 6 1.9701 -9.7857 0.6045 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8896 23 1 2.8727 -3.6047 0.8877 24 1 2.8714 -3.6039 -0.8922 25 1 0.8534 -5.0442 -0.8922 26 1 0.8542 -5.0454 0.8878 27 1 3.1014 -6.0927 0.8869 28 1 3.1013 -6.0918 -0.8930 29 1 1.1041 -7.4717 -0.7859 30 1 3.5500 -8.3177 0.5819 31 1 2.1877 -9.0866 -2.0414 32 1 3.6214 -8.0443 -1.8659 33 1 4.8853 -9.9156 -0.8758 34 1 4.2390 -10.3889 -2.4656 35 1 3.8069 -10.7890 1.1186 36 1 2.4081 -11.8720 0.9215 37 1 1.7225 -9.5824 1.6463 38 1 1.0582 -10.0014 0.0478 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385179692.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:03 Heat of formation + Delta-G solvation = -99.932231 kcal Electronic energy + Delta-G solvation = -15470.309729 eV Core-core repulsion = 12924.407136 eV Total energy + Delta-G solvation = -2545.902593 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.45303 -37.84796 -36.13651 -34.43998 -32.36520 -31.99005 -29.51324 -26.43683 -24.54552 -24.37945 -22.84334 -21.91587 -21.09392 -18.44466 -17.41660 -16.96075 -16.71441 -16.52724 -16.06275 -15.76564 -15.23212 -15.01413 -14.50174 -14.24405 -14.08118 -13.49033 -13.33689 -13.02202 -12.84465 -12.38927 -12.35075 -12.31677 -12.24002 -12.13515 -11.82682 -11.41656 -11.34677 -11.26792 -10.98146 -10.56322 -10.55572 -9.34189 -8.20320 -6.32211 1.39221 1.42745 1.50771 2.40586 2.93419 3.12243 3.14080 3.74329 3.87514 4.02614 4.09379 4.19712 4.24849 4.29112 4.46487 4.52993 4.58441 4.63348 4.74734 4.78485 4.84836 4.88916 4.92899 5.07416 5.15896 5.21036 5.24816 5.29600 5.35359 5.54123 5.76945 5.86053 6.08900 6.24964 6.25388 6.42141 6.85336 7.37218 8.91431 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.074942 B = 0.003511 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.534307 B = 7973.461922 C = 8140.343790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.022 3.978 10 C -0.097 4.097 11 C -0.106 4.106 12 C 0.072 3.928 13 N -0.691 5.691 14 C 0.084 3.916 15 C -0.182 4.182 16 C 0.064 3.936 17 O -0.403 6.403 18 C 0.060 3.940 19 C -0.139 4.139 20 H 0.264 0.736 21 H -0.011 1.011 22 H -0.011 1.011 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.343 0.657 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.108 0.892 37 H 0.080 0.920 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.731 -20.786 -0.892 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.079 0.921 9 C -0.015 4.015 10 C -0.135 4.135 11 C -0.144 4.144 12 C -0.057 4.057 13 N -0.321 5.321 14 C -0.026 4.026 15 C -0.221 4.221 16 C -0.014 4.014 17 O -0.322 6.322 18 C -0.017 4.017 19 C -0.177 4.177 20 H 0.073 0.927 21 H 0.007 0.993 22 H 0.007 0.993 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.052 0.948 29 H 0.162 0.838 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.077 0.923 36 H 0.126 0.874 37 H 0.099 0.901 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.450 -20.843 -0.294 22.136 hybrid contribution 0.279 1.464 -0.801 1.692 sum 7.728 -19.379 -1.096 20.892 Atomic orbital electron populations 1.70097 1.07891 1.27873 1.51651 1.26035 0.95806 1.03530 0.94689 0.85477 0.78262 0.77913 0.79254 1.19059 1.20787 1.19087 1.21729 0.93598 0.92541 1.50632 0.92131 1.19024 0.94527 0.93333 0.94584 1.21395 0.97972 0.93660 1.00463 1.21469 0.98081 0.93433 1.01415 1.21868 0.95274 0.88087 1.00487 1.60559 1.19817 1.01373 1.50349 1.21666 0.95052 0.90758 0.95130 1.22898 1.01462 0.99446 0.98305 1.22602 0.93616 0.85816 0.99324 1.87900 1.76796 1.40427 1.27113 1.22726 0.97881 0.98546 0.82571 1.22144 0.99281 0.93987 1.02298 0.92744 0.99255 0.99301 0.93058 0.93081 0.92926 0.92721 0.91149 0.94777 0.83827 0.90486 0.91294 0.90801 0.92269 0.87880 0.92257 0.87399 0.90136 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.13 13.29 21.45 0.28 -57.85 16 2 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 3 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.55 -31.91 9.11 25.60 0.23 -31.68 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.10 -4.02 5.15 30.59 0.16 -3.86 16 11 C -0.11 -3.61 5.48 30.60 0.17 -3.45 16 12 C 0.07 1.92 5.49 86.31 0.47 2.39 16 13 N -0.69 -16.28 6.26 -490.95 -3.07 -19.35 16 14 C 0.08 1.62 2.55 45.03 0.11 1.74 16 15 C -0.18 -3.16 5.39 30.68 0.17 -2.99 16 16 C 0.06 1.00 6.84 72.01 0.49 1.50 16 17 O -0.40 -7.72 10.76 -148.98 -1.60 -9.32 16 18 C 0.06 0.91 6.84 72.01 0.49 1.40 16 19 C -0.14 -2.42 5.75 30.68 0.18 -2.24 16 20 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 21 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 22 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 23 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 26 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.07 1.87 8.06 -2.39 -0.02 1.85 16 28 H 0.03 0.87 7.54 -2.39 -0.02 0.85 16 29 H 0.34 7.82 8.44 -89.70 -0.76 7.06 16 30 H 0.08 1.50 7.80 -2.38 -0.02 1.48 16 31 H 0.07 1.26 8.09 -2.38 -0.02 1.25 16 32 H 0.07 1.28 7.58 -2.38 -0.02 1.26 16 33 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -65.44 305.45 0.97 -64.48 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.24 Total: 10.79 kcal Atomic # 6 Polarization: -38.63 SS G_CDS: 3.09 Total: -35.54 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -2.79 Total: -77.20 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -1.60 Total: -9.32 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -65.44 0.97 -64.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385179692.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.455 kcal (2) G-P(sol) polarization free energy of solvation -65.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds